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MProfiler: A Profile-Based Method for DNA Motif Discovery [chapter]

Doaa Altarawy, Mohamed A. Ismail, Sahar M. Ghanem
2009 Lecture Notes in Computer Science  
In this paper, we propose a method, MProfiler, to increase the accuracy of MotifVoter without increasing the run time by introducing an idea called center profiling.  ...  Based on recent studies, the performance of current motif finders is not satisfactory. A number of ensemble methods have been proposed to enhance the accuracy of the results.  ...  MProfiler Methods Definitions Problem Statement: Ensemble DNA Motif finding problem can be formalized as follows: given a set of DNA sequences, and the output of different motif finding methods, each  ... 
doi:10.1007/978-3-642-04031-3_2 fatcat:we4wn7vzsbeiha7o5wfszghzpm

MCAT: Motif Combining and Association Tool

Yanshen Yang, Jeffrey A. Robertson, Zhen Guo, Jake Martinez, Christy Coghlan, Lenwood S. Heath
2019 Journal of Computational Biology  
Results: I present a novel and fast tool MCAT (Motif Combining and Association Tool) for de novo motif discovery by combining six state-of-the-art motif discovery tools (MEME, BioProspector, DECOD, XXmotif  ...  I present a novel and fast tool MCAT (Motif Combining and Association Tool) for motif discovery by combining six state-of-the-art motif discovery tools (MEME, BioProspector, DECOD, XXmotif, Weeder, and  ...  Profile-based Profile-based motif finding tools such as BEST [8] , MotifVoter [51] , and MProfiler [2] generally score each motif and report the top motifs based on their scores.  ... 
doi:10.1089/cmb.2018.0113 pmid:30418034 fatcat:xwr4ptepyvdhvmih7pme2xdci4