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MMseqs2 desktop and local web server app for fast, interactive sequence searches [article]

Milot Mirdita, Martin Steinegger, Johannes Soding
2018 bioRxiv   pre-print
The MMseqs2 desktop and web server app facilitates interactive sequence searches through custom protein sequence and profile databases on personal workstations.  ...  Source code, prebuilt desktop app packages for Windows, macOS and Linux, Docker images for the web server application, and a demo web server are available at https://search.mmseqs.com.  ...  FUNDING This work was supported by the European Research Council in the framework of its Horizon 2020 Framework Programme for Research and Innovation (grant "Virus-X", project no. 685778).  ... 
doi:10.1101/419895 fatcat:sqos3urkoffbtkhkow3acw4qtq

RCSB PDB next-generation data delivery and search services

Christine Zardecki, Jose M. Duarte, Chunxiao Bi, Charmi Bhikadiya, Sebastian Bittrich, Li Chen, Dmytro Guzenko, Robert Lowe, Joan Segura, Yana Valasatava, John Westbrook, Stephen Burley
2020 Acta Crystallographica Section A: Foundations and Advances  
Examples of the searches integrated by the aggregator are mmseqs2 sequence search (1), BioZernike structure shape search (2), and sequence motif search.  ...  The data model is based on the PDBx/mmCIF dictionary (http://mmcif.wwpdb.org/) with extensions that facilitate usage and delivery for the RCSB PDB website and web services.  ...  MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics, doi: 10.1093/bioinformatics/bty1057 (2019). Dmytro Guzenko, Stephen K. Burley, Jose M. Duarte.  ... 
doi:10.1107/s0108767320099298 fatcat:yvixhxqrt5aofi45w4iuldmyty