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MIRPIPE: quantification of microRNAs in niche model organisms

Carsten Kuenne, Jens Preussner, Mario Herzog, Thomas Braun, Mario Looso
2014 Computer applications in the biosciences : CABIOS  
Niche model organisms lacking genomic sequences cannot be analyzed by such tools.  ...  MicroRNAs (miRNAs) represent an important class of small non-coding RNAs regulating gene expression in eukaryotes.  ...  Sequence differences between taxa hamper quantification, especially if no genomic or miRNA data for the studied organism are available as in the case of niche model organisms.  ... 
doi:10.1093/bioinformatics/btu573 pmid:25165094 pmcid:PMC4816158 fatcat:ixrdbhy4pjhmzilhjk2xgt2m3e

PmiRExAt: plant miRNA expression atlas database and web applications

Anoop Kishor Singh Gurjar, Abhijeet Singh Panwar, Rajinder Gupta, Shrikant S. Mantri
2016 Database: The Journal of Biological Databases and Curation  
Custom expression analysis feature enables expression analysis of novel miRNA in total 117 datasets.  ...  Novel insights gained through data mining in publically available rich resource of sRNA data will help in designing biotechnology-based approaches for crop improvement to enhance plant yield and nutritional  ...  Funding This work was financially supported by the core grant of National Agri-Food Biotechnology Institute (NABI), Mohali, India an autonomous institute of Department of Biotechnology, Government of India  ... 
doi:10.1093/database/baw060 pmid:27081157 pmcid:PMC4830907 fatcat:eeoccbanibhgrmqek6unal7u34