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MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis

Folker Meyer, Saurabh Bagchi, Somali Chaterji, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L. Trimble, Andreas Wilke
2017 Briefings in Bioinformatics  
implementation of the community's data analysis tasks.  ...  On the technical platform side, the MG-RAST team intends to support the Common Workflow Language as a standard to specify bioinformatics workflows, both to facilitate development and efficient high-performance  ...  Funding The work reported in this article was supported in part by a grant from the National Institutes of Health (NIH) grant 1R01AI123037-01.  ... 
doi:10.1093/bib/bbx105 pmid:29028869 fatcat:i72b4oguhnhkhisepyj27n6gia

HAMAP rules as SPARQL - A portable annotation pipeline for genomes and proteomes [article]

Jerven Bolleman, Edouard de Castro, Delphine Baratin, Sebastien Gehant, Beatrice A Cuche, Andrea Auchincloss, Elisabeth COUDERT, Chantal Hulo, Patrick Masson, Ivo Pedruzzi, Catherine Rivoire, Ioannis Xenarios (+2 others)
2019 bioRxiv   pre-print
Availability: HAMAP SPARQL rules and documentation are freely available for download from the HAMAP FTP site ftp://ftp.expasy.org/databases/hamap/hamap_sparql.tar.gz under a CC-BY-ND 4.0 license.  ...  One cost-effective way to increase the data quality in public databases is to encourage the adoption of annotation standards and technological solutions that enable the sharing of biological knowledge  ...  The development of the HAMAP SPARQL rules was also supported by the ELIXIR Implementation study on "A microbial metabolism resource for Systems Biology". Funding for open access charge: SERI.  ... 
doi:10.1101/615294 fatcat:hivb7ymy3zeslmcgmrmnt4opti

Education for Sustainable Development [chapter]

2017 Encyclopedia of Educational Philosophy and Theory  
Acknowledgements x Acknowledgements Part of this article has benefited from the financial support of the European Council under the ERC Advanced Grant no.249835 "TERNANOMED".  ...  Acknowledgement The authors gratefully acknowledge the efforts of all partners of this initiative.  ...  "The Metagenomics RAST Server-A Public Resource for the Automatic Phylogenetic and Functional Analysis of Metagenomes". BMC Bioinformatics 9 (2008): 386. 27. Mokili, J. L., F. Rohwer, and B. E.  ... 
doi:10.1007/978-981-287-588-4_100294 fatcat:q4eqqvtxvfhypegpq2iwkvdw54

Abstracts of the Asian Congress of Nutrition 2019

2019 Annals of Nutrition and Metabolism  
Advances in "omics" technologies are contributing to a better knowledge of the interplay among environmental facets and genetic polymorphisms (genomics), epigenetic signatures (epigenomics) or gene expression  ...  patterns (transcriptomics) as well as metabolite concentrations changes in urine and blood (metabolomics) and the microorganisms composition on the gut (metagenomics) that are affecting in the onset and  ...  Attitudes in International and Chinese Students of Southeast University in China  ... 
doi:10.1159/000501751 pmid:31365918 fatcat:u2sqdvtec5dubfameafvnifahe

Abstracts from the 5th International Research Conference on Huanglongbing

Organization IOCV
2017 Journal of citrus pathology  
Using practical experiences from researchers and citrus growers in Florida, current thermotherapy methods and technologies are detailed and initial lessons learned from application of thermotherapy to  ...  even from low-titer shoots.  ...  Data sets containing >4 billion (Giga) bp of sequence were generated from each sample.  ... 
doi:10.5070/c441034714 fatcat:ytjrcafo7zh25ap2ij2uy7zbeu

Abstracts of Presentations Development of the Hydro-Solar Thermotherapy (HSTT) for treatment of HLB infected citrus

G Aiken, T Gottwald, J Kainz, G Poole, J Truett
unpublished
The anatomy was elucidated using a high resolution Bruker Skyscan 1172 micro tomography system, micro-CT (www.Skyscan.be) Department of Zoology, University of Granada, Spain.  ...  Water temperatures in excess of 60C can be generated, and under bark temperatures reached the low to mid 40's.  ...  Using practical experiences from researchers and citrus growers in Florida, current thermotherapy methods and technologies are detailed and initial lessons learned from application of thermotherapy to  ... 
fatcat:5bhevhbhznazfggqdhh6ikgmyi