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MAMMOTh: a new database for curated MAthematical Models of bioMOlecular sysTems
[article]
2016
bioRxiv
pre-print
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In accordance with this bottom-up approach, we have developed MAMMOTh (MAthematical Models of bioMOlecular sysTems) database that allows integrating manually curated mathematical models of biomolecular ...
Thus, to simulate the internal nature and dynamics of the whole biological system we should use the iterative way for a model reconstruction, which is a consistent composition and combination of its elementary ...
RESULTS
MAMMOTh database The MAMMOTh database is designed for storage and accumulation of elementary subsystem models of biomolecular systems. ...
doi:10.1101/053652
fatcat:33jw3gcyiff4dfuaoiolcru72u
MAMMOTh: A new database for curated mathematical models of biomolecular systems
2018
Journal of Bioinformatics and Computational Biology
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In accordance with this bottom-up approach, we have developed MAMMOTh (MAthematical Models of bioMOlecular sysTems) database that allows integrating manually curated mathematical models of biomolecular ...
Thus, to simulate the internal nature and dynamics of the whole biological system we should use the iterative way for a model reconstruction, which is a consistent composition and combination of its elementary ...
REST API: http://mammoth.biomodelsgroup.ru/api
LIST OF ABBREVIATIONS
DDE -Delay Differential Equation. BMS -Biomolecular Systems. MAMMOTh -MAthematical Models of bioMOlecular sysTems. ...
doi:10.1142/s0219720017400108
pmid:29172865
fatcat:yt5zbiwkmferdb3ctxt3tmdtya
Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research
2018
Journal of Biomechanical Engineering
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Computational modeling has greatly augmented our understanding of the role of mechanics on biological function, and now it is a widely utilized strategy for biomechanics research. ...
The reach of computational biomechanics spans practically all organs and tissue types, from brain [1] to cardiovascular system [2], and from respiratory function [3] to musculoskeletal response [4]. ...
All co-authors were given the opportunity to review and edit the draft of the full manuscript and agree with its contents. ...
doi:10.1115/1.4038768
pmid:29247253
pmcid:PMC5821103
fatcat:5tukcnxp7rhvpct4pffqhi3uky
MGSGenerator 1.5: инструментарий для реконструкции математических моделей метаболических сетей
2020
Systems Biology and Bioinformatics (SBB-2020) : The Twelfth International Young Scientists School
unpublished
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Timonov, A. Ratushnyi, T. Khlebodarova, Likhoshvai V. MAMMOTh: A new database for curated mathematical models of biomolecular systems. ...
Основной источник готовых моделей -база данных MAMMOTh [2], в которой содержаться ферментативные реакции E. coli, адаптированные к экспериментальным данным; 3) если подходящей по структуре моделей не было ...
Основной источник готовых моделей -база данных MAMMOTh [2] , в которой содержаться ферментативные реакции E. coli, адаптированные к экспериментальным данным; 3) если подходящей по структуре моделей не ...
doi:10.18699/sbb-2020-62
fatcat:hlogbdfqzzfn5phatfufs2jd44
ARCHAEOMETRY: AN OVERVIEW
2020
Zenodo
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For over 70 years the introduction of natural sciences to archaeology and cultural heritage has been ever growing with multiple contributions to deciphering the past. ...
Archaeometry is Science at the Service of Human History and Art. ...
» in the context of the project "Strengthening Human Resources Research Potential via Doctorate Research" (MIS-5000432), implemented by the State Scholarships Foundation (ΙΚΥ). ...
doi:10.5281/zenodo.3625220
fatcat:zdxlap4yjvalro34gfsptjz3ii
The makers of the Protoaurignacian and implications for Neandertal extinction
2015
Science
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., Higuero, A., Ríos, L., García Martínez, D., 2014b. ree-dimensional analysis of sexual dimorphism in human thoracic vertebrae: Implications for the respiratory system and spine morphology. Am. J. ...
Acknowledgements: We would like to thank the curators and technicians of different institutions: Musée national d'histoire naturèlle de Paris (France), Natural History Museum of London (UK) and e Royal ...
Some of these models [3] even proposed new classification systems, comprised of various phases or lithic techno-complexes, as a replacement for Bordian systematics. ...
doi:10.1126/science.aaa2773
pmid:25908660
fatcat:6m44miosqzbxljew7jbfm5cm5q
University of Nebraska — Lincoln
[chapter]
2002
Outreach Scholarship
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of new electronic databases in their field. ...
Civil engineers are working with the Nebraska Department of Roads to develop a microsimulation model for Nebraska's state highway system. ...
In FY 2000, a policy was established for all new construction that required 2 percent of construction costs be set aside from the annual operating budget to create a maintenance reserve to address future ...
doi:10.1007/978-1-4615-0885-4_23
fatcat:ahgnf6tdirdunjr3n7g7c63vmm
My Stable Isotope Journey in Biogeochemistry, Geoecology, and Astrobiology
2019
Geochemical Perspectives
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We measured the isotopic composition of all of them, a database of over 1,000 specimens. ...
Of particular interest, now that the TC/EA (thermo-chemolysis elemental analyser) was operating routinely, was a new collaboration with Gary Graves, Curator of Birds, at the Natural History Museum of the ...
It generates NADPH and pentoses (5-carbon sugars) as well as ribose 5-phosphate, the last one a precursor for the synthesis of nucleotides. ...
doi:10.7185/geochempersp.8.2
fatcat:qq4ooc37fjeszfhl4pv7i6phhi
A critical analysis of the international standards for research and conservation of pleistocene sites: the future of the global heritage of human evolution
[article]
2020
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On the basis of a critical revision of the application of the criteria that justify the Outstanding Universal Value over time, this work discusses and identifies the need for a specific chapter in 2the ...
, intangible, documentary or molecular when defining the very nature of a site related to our early past as humans. ...
An essential step in this process is the development of a database for each site. ...
doi:10.15496/publikation-43303
fatcat:npgkp5jzgrdsxnguzgurso3jku
Universität Ulm 2014
2016
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of a mythical creature made from mammoth ivory). ...
The researchers in Ulm are hoping that their new classification system, which was published in the renowned journal »Brain«, can play a role in developing improved approaches for new therapies. ...
doi:10.18725/oparu-3834
fatcat:zpafa72tojdfjpwjnevcoxhapa
Investigating the Antiquity of Inter-Regional Contact between Southern Yukon and the Northern Northwest Coast through an Ancient DNA Analysis of Cryogenic Wooden Biofacts Recovered from Alpine Archaeological Sites in the Northwestern Subarctic
[article]
2015
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DNA could not be amplified from the target specimen, leading to an investigation of the viability of paleogenetics for wooden artifacts using biofacts from alpine ice patches in Southern Yukon. ...
Ancient DNA was used in an attempt to assess the specimen's origin based on a phylogeographic analysis of modern Salix distributed on either side of the Saint Elias Range. ...
of extinction for a variety of New World fauna and found that the process seems to have been species-specific, related to longer lasting trends, and more complex than previous models have allowed. ...
doi:10.11575/prism/26636
fatcat:c43lm7m3bvavtoorjlsc4tvi3m