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MAMMOTh: a new database for curated MAthematical Models of bioMOlecular sysTems [article]

Fedor Kazantsev, Ilya Akberdin, Sergey Lashin, Natalia Ree, Vladimir Timonov, Alexander Ratushny, Tamara Khlebodarova, Vitaly Likhoshvai
2016 bioRxiv   pre-print
In accordance with this bottom-up approach, we have developed MAMMOTh (MAthematical Models of bioMOlecular sysTems) database that allows integrating manually curated mathematical models of biomolecular  ...  Thus, to simulate the internal nature and dynamics of the whole biological system we should use the iterative way for a model reconstruction, which is a consistent composition and combination of its elementary  ...  RESULTS MAMMOTh database The MAMMOTh database is designed for storage and accumulation of elementary subsystem models of biomolecular systems.  ... 
doi:10.1101/053652 fatcat:33jw3gcyiff4dfuaoiolcru72u

MAMMOTh: A new database for curated mathematical models of biomolecular systems

Fedor Kazantsev, Ilya Akberdin, Sergey Lashin, Natalia Ree, Vladimir Timonov, Alexander Ratushny, Tamara Khlebodarova, Vitaly Likhoshvai
2018 Journal of Bioinformatics and Computational Biology  
In accordance with this bottom-up approach, we have developed MAMMOTh (MAthematical Models of bioMOlecular sysTems) database that allows integrating manually curated mathematical models of biomolecular  ...  Thus, to simulate the internal nature and dynamics of the whole biological system we should use the iterative way for a model reconstruction, which is a consistent composition and combination of its elementary  ...  REST API: http://mammoth.biomodelsgroup.ru/api LIST OF ABBREVIATIONS DDE -Delay Differential Equation. BMS -Biomolecular Systems. MAMMOTh -MAthematical Models of bioMOlecular sysTems.  ... 
doi:10.1142/s0219720017400108 pmid:29172865 fatcat:yt5zbiwkmferdb3ctxt3tmdtya

Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research

Ahmet Erdemir, Peter J. Hunter, Gerhard A. Holzapfel, Leslie M. Loew, John Middleton, Christopher R. Jacobs, Perumal Nithiarasu, Rainlad Löhner, Guowei Wei, Beth A. Winkelstein, Victor H. Barocas, Farshid Guilak (+9 others)
2018 Journal of Biomechanical Engineering  
Computational modeling has greatly augmented our understanding of the role of mechanics on biological function, and now it is a widely utilized strategy for biomechanics research.  ...  The reach of computational biomechanics spans practically all organs and tissue types, from brain [1] to cardiovascular system [2], and from respiratory function [3] to musculoskeletal response [4].  ...  All co-authors were given the opportunity to review and edit the draft of the full manuscript and agree with its contents.  ... 
doi:10.1115/1.4038768 pmid:29247253 pmcid:PMC5821103 fatcat:5tukcnxp7rhvpct4pffqhi3uky

MGSGenerator 1.5: инструментарий для реконструкции математических моделей метаболических сетей

2020 Systems Biology and Bioinformatics (SBB-2020) : The Twelfth International Young Scientists School   unpublished
Timonov, A. Ratushnyi, T. Khlebodarova, Likhoshvai V. MAMMOTh: A new database for curated mathematical models of biomolecular systems.  ...  Основной источник готовых моделей -база данных MAMMOTh [2], в которой содержаться ферментативные реакции E. coli, адаптированные к экспериментальным данным; 3) если подходящей по структуре моделей не было  ...  Основной источник готовых моделей -база данных MAMMOTh [2] , в которой содержаться ферментативные реакции E. coli, адаптированные к экспериментальным данным; 3) если подходящей по структуре моделей не  ... 
doi:10.18699/sbb-2020-62 fatcat:hlogbdfqzzfn5phatfufs2jd44

ARCHAEOMETRY: AN OVERVIEW

I. Liritzis, N. Laskaris, A. Vafiadou, I. Karapanagiotis, P. Volonakis, C. Papageorgopoulou, M. Bratitsi
2020 Zenodo  
For over 70 years the introduction of natural sciences to archaeology and cultural heritage has been ever growing with multiple contributions to deciphering the past.  ...  Archaeometry is Science at the Service of Human History and Art.  ...  » in the context of the project "Strengthening Human Resources Research Potential via Doctorate Research" (MIS-5000432), implemented by the State Scholarships Foundation (ΙΚΥ).  ... 
doi:10.5281/zenodo.3625220 fatcat:zdxlap4yjvalro34gfsptjz3ii

The makers of the Protoaurignacian and implications for Neandertal extinction

S. Benazzi, V. Slon, S. Talamo, F. Negrino, M. Peresani, S. E. Bailey, S. Sawyer, D. Panetta, G. Vicino, E. Starnini, M. A. Mannino, P. A. Salvadori (+3 others)
2015 Science  
., Higuero, A., Ríos, L., García Martínez, D., 2014b. ree-dimensional analysis of sexual dimorphism in human thoracic vertebrae: Implications for the respiratory system and spine morphology. Am. J.  ...  Acknowledgements: We would like to thank the curators and technicians of different institutions: Musée national d'histoire naturèlle de Paris (France), Natural History Museum of London (UK) and e Royal  ...  Some of these models [3] even proposed new classification systems, comprised of various phases or lithic techno-complexes, as a replacement for Bordian systematics.  ... 
doi:10.1126/science.aaa2773 pmid:25908660 fatcat:6m44miosqzbxljew7jbfm5cm5q

University of Nebraska — Lincoln [chapter]

Eric Hartman, Diane Podolske, James Moeser
2002 Outreach Scholarship  
of new electronic databases in their field.  ...  Civil engineers are working with the Nebraska Department of Roads to develop a microsimulation model for Nebraska's state highway system.  ...  In FY 2000, a policy was established for all new construction that required 2 percent of construction costs be set aside from the annual operating budget to create a maintenance reserve to address future  ... 
doi:10.1007/978-1-4615-0885-4_23 fatcat:ahgnf6tdirdunjr3n7g7c63vmm

My Stable Isotope Journey in Biogeochemistry, Geoecology, and Astrobiology

Marilyn Fogel
2019 Geochemical Perspectives  
We measured the isotopic composition of all of them, a database of over 1,000 specimens.  ...  Of particular interest, now that the TC/EA (thermo-chemolysis elemental analyser) was operating routinely, was a new collaboration with Gary Graves, Curator of Birds, at the Natural History Museum of the  ...  It generates NADPH and pentoses (5-carbon sugars) as well as ribose 5-phosphate, the last one a precursor for the synthesis of nucleotides.  ... 
doi:10.7185/geochempersp.8.2 fatcat:qq4ooc37fjeszfhl4pv7i6phhi

A critical analysis of the international standards for research and conservation of pleistocene sites: the future of the global heritage of human evolution [article]

Nuria Sanz, Universitaet Tuebingen, Universitaet Tuebingen, Conard, Nicholas (Prof.)
2020
On the basis of a critical revision of the application of the criteria that justify the Outstanding Universal Value over time, this work discusses and identifies the need for a specific chapter in 2the  ...  , intangible, documentary or molecular when defining the very nature of a site related to our early past as humans.  ...  An essential step in this process is the development of a database for each site.  ... 
doi:10.15496/publikation-43303 fatcat:npgkp5jzgrdsxnguzgurso3jku

Universität Ulm 2014

(:Unkn)Unknown, Universität Ulm, Karl Joachim Ebeling
2016
of a mythical creature made from mammoth ivory).  ...  The researchers in Ulm are hoping that their new classification system, which was published in the renowned journal »Brain«, can play a role in developing improved approaches for new therapies.  ... 
doi:10.18725/oparu-3834 fatcat:zpafa72tojdfjpwjnevcoxhapa

Investigating the Antiquity of Inter-Regional Contact between Southern Yukon and the Northern Northwest Coast through an Ancient DNA Analysis of Cryogenic Wooden Biofacts Recovered from Alpine Archaeological Sites in the Northwestern Subarctic [article]

Tyler James Murchie, University Of Calgary, University Of Calgary, Peter C. Dawson
2015
DNA could not be amplified from the target specimen, leading to an investigation of the viability of paleogenetics for wooden artifacts using biofacts from alpine ice patches in Southern Yukon.  ...  Ancient DNA was used in an attempt to assess the specimen's origin based on a phylogeographic analysis of modern Salix distributed on either side of the Saint Elias Range.  ...  of extinction for a variety of New World fauna and found that the process seems to have been species-specific, related to longer lasting trends, and more complex than previous models have allowed.  ... 
doi:10.11575/prism/26636 fatcat:c43lm7m3bvavtoorjlsc4tvi3m