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Logol: Expressive Pattern Matching in Sequences. Application to Ribosomal Frameshift Modeling [chapter]

Catherine Belleannée, Olivier Sallou, Jacques Nicolas
2014 Lecture Notes in Computer Science  
This article introduces Logol, a new application designed to achieve pattern matching in possibly large sequences with customized biological patterns.  ...  Its expressive power is presented through an application using the main components of the language : the identification of -1 programmed ribosomal frameshifting (PRF) events in messenger RNA sequences.  ...  Among them, the model designer let the user draw the model graphically, and the web application converts it into a Logol grammar. Sequence Analysis Pattern matching is performed in two stages.  ... 
doi:10.1007/978-3-319-09192-1_4 fatcat:himy54zurfemxjwds3pb5px47u