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Integrative Gene Expression and Metabolic Analysis Tool IgemRNA

Kristina Grausa, Ivars Mozga, Karlis Pleiko, Agris Pentjuss
2022 Biomolecules  
Several algorithms for transcriptome analysis using genome-scale metabolic modeling have been proposed.  ...  , which (1) has a user-friendly graphical interface, (2) tackles compatibility issues by combining previous data input and pre-processing algorithms in MATLAB, and (3) introduces novel algorithms for the  ...  …) YDL224C 56 YDL223C 13 YDL222C 3 YDL221W 135 One global threshold: 1. exact value input Lower threshold: 130 Lower threshold: 130 Local for YDL227C: 600 Local for YDL227C: 600 Local for YDL225W: 350  ... 
doi:10.3390/biom12040586 pmid:35454176 pmcid:PMC9029533 fatcat:4x2uylfrirbqhiyzsyjllpkyoa

Sensitivity Analysis in Watershed Model Using SUFI-2 Algorithm

Khairi Khalid, Mohd Fozi Ali, Nor Faiza Abd Rahman, Muhamad Radzali Mispan, Siti Humaira Haron, Zulhafizal Othman, Mohd Fairuz Bachok
2016 Procedia Engineering  
For Langat River Basin, five SWAT input parameters show the most sensitive for both of the local and global sensitivity procedures, including of CN2.mgt,, SLOPE.hru, SOL_AWC.sol and SOL_K.sol  ...  Sensitivity analysis is an integral part of model development and involves analytical examination of input parameters to aid in model validation and provide guidance for future research.  ...  The analysis was including the global sensitivity analysis and local sensitivity analysis.  ... 
doi:10.1016/j.proeng.2016.11.086 fatcat:ax4djnv2drf6peq2zvntblj2a4

Global sensitivity analysis of unreinforced masonry structure using high dimensional model representation

D. Mukherjee, B.N. Rao, A. Meher Prasad
2011 Engineering structures  
The ability of two major variations of HDMR, namely RS (Random Sampling)-HDMR and Cut-HDMR, for conducting global SA is explored, first by solving analytical problem and later by analyzing the mesoscale  ...  Sensitivity Analysis (SA) has very important implications in terms of model assessment. It is an important part of reliability studies as well.  ...  When SA is performed by varying each input parameter keeping other input parameters constant, it is called local SA [3].  ... 
doi:10.1016/j.engstruct.2011.01.008 fatcat:okduuqqmm5bg7gvguaxaqthvoi

A local/global approach for predicting welding distortions in automotive chassis design

Cristina Renzi, Davide Panari, Francesco Leali
2018 Zenodo  
To overcome this problem, in this paper, the local-global approach has been adopted. A top class car automotive aluminum chassis has been chosen as a case study.  ...  As a novel contribution, a sensitivity analysis has been added, in order to include tolerances in future FEA models.  ...  Two local models have been built, as to carry out a TEP analysis for each local model.  ... 
doi:10.5281/zenodo.1491533 fatcat:jiagjawiprfe7k3zzhzncymyvm

Uncertainty analysis of correlated parameters in automated reaction mechanism generation

Connie W. Gao, Mengjie Liu, William H. Green
2020 International Journal of Chemical Kinetics  
We also thank Ray Speth for his help working with Cantera.  ...  Acknowledgements We thank Professor Youssef Marzouk for providing advice on this work, as well as his students Andrew Davis and Matthew Parno, who helped with the MIT Uncertainty Quantification (MUQ) library  ...  Unlike in the local analysis, where all uncertainties for all input parameters were considered, the global analysis only varied the 10 chosen parameters.  ... 
doi:10.1002/kin.21348 fatcat:gnnsheybojal5cmtqr6365s6xy

Local and Global Energy Efficiency Analysis for Energy Production Based on Multi-Plant Generalized Production Technology

Mojtaba Ghiyasi, Babak Daneshvar Rouyendegh, Yavuz Selim Ozdemir
2021 IEEE Access  
In this paper, proposed models are utilized for the local and global efficiency analysis of 46 power plants of 19 provinces in Iran.  ...  The local and global analysis is performed in the province and country level respectively.  ... 
doi:10.1109/access.2021.3072493 fatcat:rzvruxjds5bs3mjidya363sghu

Effective connectivity analysis of global and local mental imagery by dynamic causal modeling

Jian Li, Danni Sui, Yi-Yuan Tang
2008 BMC Neuroscience  
Subjects were shown one target image and then requested to generate the corresponding mental image (global or local). ERPs were recorded for each subject.  ...  Based on a previous study, we chose the occipito-temporal, parietal and frontal regions as the nodes for effective connectivity analysis [1, 2] .  ...  Subjects were shown one target image and then requested to generate the corresponding mental image (global or local). ERPs were recorded for each subject.  ... 
doi:10.1186/1471-2202-9-s1-p34 fatcat:hyszbne53ze2bpymp2456avnoq

Sensitivity analysis approaches applied to systems biology models

Z. Zi
2011 IET Systems Biology  
Local and global sensitivity analysis approaches are the two types of sensitivity analysis that are commonly applied in systems biology.  ...  On the other hand, global sensitivity analysis approaches have been applied to understand how the model outputs are affected by large variations of the model input parameters.  ...  Local sensitivity analysis There are two types of sensitivity analysis approaches: local and global sensitivity analysis.  ... 
doi:10.1049/iet-syb.2011.0015 pmid:22129029 fatcat:vrxido3agrdchjnnjant22h2da

A Systematic Approach to Explorative Scenario Analysis in Emergy Assessment with Emphasis on Resilience

Andreas Kamp, Hanne Østergård
2016 BioPhysical Economics and Resource Quality  
inputs (%Local) as relevant resilience indicators in EmA.  ...  We develop a systematic approach to explorative scenario analysis and attempt to quantify aspects of resilience specifically for emergy assessment (EmA) of production systems.  ...  R global O ð Þ ¼ X Em i à %R global;i =Em O ð2Þ %Local O ð Þ ¼ X Em i à %Local i =Em O ð3Þ for the local supply fraction (%Local) of output O with %Local i being the local supply fraction of input i.  ... 
doi:10.1007/s41247-016-0008-6 fatcat:en3yjeq6qnh7dbtywpbbfdnj4m

Local–global strategy for the prediction of residual stresses in FSW processes

N. Dialami, M. Cervera, M. Chiumenti, C. Agelet de Saracibar
2016 The International Journal of Advanced Manufacturing Technology  
The output of this local analysis is the heat generated either by plastic dissipation or by friction and it is used as the power input for the welding analysis at structural (global) level.  ...  A coupling strategy between the analysis of the process zone nearby the pin-tool (local level analysis) and the simulation carried out for the entire structure to be welded (global level analysis) is implemented  ...  This is performed (only once) by the local level analysis and it is the main input for the global level analysis.  ... 
doi:10.1007/s00170-016-9016-3 fatcat:zzbvuvkdb5abfh6sw6jau67h4y

From local to global importance measures of uncertainty propagation in composite structures

Carlos Conceição António, Luísa N. Hoffbauer
2008 Composite structures  
The uncertainty propagation and the importance measure of input parameters are analysed using three different approaches: a first-order local method, a Global Sensitivity Analysis (GSA) supported by a  ...  variance-based method and an extension of local variance to estimate the global variance over the domain of inputs.  ...  method, a Global Sensitivity Analysis supported by a variance-based method and an extension of local variance to estimate the global variance over all domain of inputs.  ... 
doi:10.1016/j.compstruct.2007.10.012 fatcat:o76qfkdaynfh3kizpiv4gcutsi

Functional connectivity of organic neuromorphic devices by global voltage oscillations devices by global voltage oscillations

Dimitrios A. Koutsouras, Themis Prodromakis, George G. Malliaras, Paul W. M. Blom, Paschalis Gkoupidenis
2019 Advanced Intelligent Systems  
The output of these devices is shown to be synchronized by a global oscillatory input despite the fact that individual inputs are stochastic and independent.  ...  This functional connectivity reconfigures as needed for the architecture of the neural network, thereby transcending the limitations of its hardwired structure.  ...  for creating the artwork.  ... 
doi:10.1002/aisy.201900013 fatcat:o2o2ewdizvbw5bgagwaibskmsq

Contents [chapter]

2020 Delay-Adaptive Linear Control  
38 3.3 Global Stabilization under Uncertain Delay 41 3.4 Local Stabilization under Uncertain Delay and Actuator State 43 3.5 Global Trajectory Tracking under Uncertain Delay and Parameters 49  ...  8.1 Model Depiction 169 8.2 Local Stabilization under Uncertain Delays and PDE States 170 8.3 Stability Analysis 178 8.4 Simulation 187 9 Output Feedback of Systems with Uncertain Delays, Parameters  ... 
doi:10.1515/9780691203317-toc fatcat:csvfxwpvsvgzxjcbmbk4ks7gs4

Detecting Rotational Symmetry via Global/Local Image Analysis

Yousuke Inagaki, Kanji Tanaka
2013 IAPR International Workshop on Machine Vision Applications  
We propose a unified framework for rotational symmetry detection that combines the advantages of global and local image analysis.  ...  Our idea is to employ efficient local image analysis as a cue, to intelligently choose most likely symmetry candidates, out of the potential candidates detected by the global method.  ...  Detecting skewed rotational symmetries via global/local image analysis.  ... 
dblp:conf/mva/InagakiT13 fatcat:ge7er3lncjez5bmvgnzdhebxgm

Analysis of Active Feedback and its Influence on UWB Low Noise Amplifier

P. Keerthana, V.Vaithianathan V.Vaithianathan, J.Raja J.Raja, R.Srinivasan R.Srinivasan
2014 International Journal of Computer Applications  
Section 3 discusses about the basic LNA taken for analysis. Section 4 discusses about noise cancellation principle in global feedback, local full feedback and local partial feedback.  ...  Fig 5 : 5 Analysis of local full feedback with CG/CD/R network Fig 6: Analysis of local full feedback with CS network Fig 7: Analysis of local partial feedback with CG/CD/R network Fig 8: Analysis of local  ... 
doi:10.5120/15733-4645 fatcat:5vdjwwjlorclhld2b3yizwcndy
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