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Life sciences domain analysis model

Robert R Freimuth, Elaine T Freund, Lisa Schick, Mukesh K Sharma, Grace A Stafford, Baris E Suzek, Joyce Hernandez, Jason Hipp, Jenny M Kelley, Konrad Rokicki, Sue Pan, Andrew Buckler (+5 others)
2012 JAMIA Journal of the American Medical Informatics Association  
To help address this, the authors developed the Life Sciences Domain Analysis Model (LS DAM), an information model that provides a framework for communication among domain experts and technical teams developing  ...  Materials and methods The content of the LS DAM was driven by analysis of life sciences and translational research scenarios and the concepts in the model are derived from existing information models,  ...  Sciences Domain Analysis Model.  ... 
doi:10.1136/amiajnl-2011-000763 pmid:22744959 pmcid:PMC3486731 fatcat:esoqtildrfgp5kqjkq5ayyguei

Data Mining in Life Sciences: A Case Study on SAPs In-Memory Computing Engine [chapter]

Joos-Hendrik Boese, Gennadi Rabinovitch, Matthias Steinbrecher, Miganoush Magarian, Massimiliano Marcon, Cafer Tosun, Vishal Sikka
2013 Lecture Notes in Business Information Processing  
We also implemented a flexible data analysis toolbox that can be used by life sciences researchers to easily design and evaluate their analysis models.  ...  sciences.  ...  It provides graphical editors for calculation models, thus allowing to easily define and manipulate analysis pipelines for enterprise applications as well as for life science research.  ... 
doi:10.1007/978-3-642-39872-8_2 fatcat:vrriepmg7rewhaiffpbffvvaeu

DDBJ Data Analysis Challenge: a machine learning competition to predict Arabidopsis chromatin feature annotations from DNA sequences

Eli Kaminuma, Yukino Baba, Masahiro Mochizuki, Hirotaka Matsumoto, Haruka Ozaki, Toshitsugu Okayama, Takuya Kato, Shinya Oki, Takatomo Fujisawa, Yasukazu Nakamura, Masanori Arita, Osamu Ogasawara (+2 others)
2020 Genes & Genetic Systems  
In this report, we describe how we investigated the potential of crowdsourced modelling for a life science task by conducting a machine learning competition, the DNA Data Bank of Japan (DDBJ) Data Analysis  ...  science.  ...  Data analysis was partially performed using the Research Organization of Information and Systems (ROIS) NIG Supercomputer System.  ... 
doi:10.1266/ggs.19-00034 pmid:32213716 fatcat:ae6ecvdeo5bzrnddbrwpjs3b6u

Search for Computational Workflow Synergies in Reproducible Research Data Analyses in Particle Physics and Life Sciences

Tibor Simko, Kyle Cranmer, Michael R. Crusoe, Lukas Heinrich, Anton Khodak, Dinos Kousidis, Diego Rodriguez
2018 2018 IEEE 14th International Conference on e-Science (e-Science)  
ACKNOWLEDGMENT The CWL integration with the REANA platform was partially supported by the United States' National Science Foundation grant PHY-1247316 "Data and Software Preservation for Open Science"  ...  We integrated support for running Common Workflow Language (CWL) workflows that originated in the domain of life sciences.  ...  COMMON WORKFLOW LANGUAGE The Common Workflow Language (CWL) [2] standard for describing analysis workflows originated in the domain of bioinformatics and life sciences and became used in other data-intensive  ... 
doi:10.1109/escience.2018.00123 dblp:conf/eScience/SimkoCCHKKR18 fatcat:5lwbmlcm75dbdfysth4b6kxh4e

Research On The Predict Method Of Random Vibration Cumulative Fatigue Damage Life Based On The Finite Element Analysis

Wang Chengcheng, Li Chuanri, Xu Fei, Guo Ying
2012 Zenodo  
of product life process, promote the application of finite element simulation analysis in engineering practice.  ...  With the research on analysis methods, make an organic combination of simulation analysis and testing, Not only ensure the accuracy of simulation analysis and life predict, but also make a dynamic supervision  ...  Frequency Domain Method Result Analysis Fatigue life frequency domain method, is in the frequency domain response with power spectral density (PSD) spectrum parameters describing the stress response information  ... 
doi:10.5281/zenodo.1061644 fatcat:ynvixjgnevejzgcj3uzyhnye4u

Multiscale Modelling and Simulation, 14th International Workshop

Derek Groen, Bartosz Bosak, Valeria Krzhizhanovskaya, Alfons Hoekstra, Petros Koumoutsakos
2017 Procedia Computer Science  
Multiscale Modelling and Simulation (MMS) is a cornerstone in today's research in computational science.  ...  Abstract Multiscale Modelling and Simulation (MMS) is a cornerstone in today's research in computational science.  ...  engineering to the life science and the socio-economic domain.  ... 
doi:10.1016/j.procs.2017.05.275 fatcat:nyf6usb53feubeglamvnkcpmpu

Investigating Importance Weighting of Satisfaction Scores from a Formative Model with Partial Least Squares Analysis

Chia-Huei Wu, Lung Hung Chen, Ying-Mei Tsai
2008 Social Indicators Research  
Three measures of domain satisfaction, domain importance, and global satisfaction were collected in each dataset. Partial least squares analysis was used in model estimation.  ...  In the life satisfaction dataset, 237 undergraduates at Central Taiwan University of Science and Technology voluntarily provided their responses.  ...  Formative Model with Partial Least Squares Analysis 361  ... 
doi:10.1007/s11205-008-9264-1 fatcat:ilidjzhmr5ckfhskk3avc7ch54

Workflows for Information Integration in the Life Sciences [chapter]

Paolo Missier, Norman Paton, Peter Li
2011 Lecture Notes in Computer Science  
• • In other words: -is the SeCo query model interesting from the point of view of system biology(or other bioinf domain) research?  ...  - Open Provenance Model (XML or RDF) -well-curated ➔ easier to discover -designed to work together ➔ easier to compose Well-behaved service collections exist in specific domains Example 2: caGrid  ...  • can the SeCo model take advantage of existing provenance models? (Shameless self) references  ... 
doi:10.1007/978-3-642-19668-3_20 fatcat:rslr3flzffgczejhp3cu33jy3i

Journal Club Presentation: An Evaluation Study Based on the CIIP Model

Mehdi Mirzaei-Alavijeh, Lida Memar Eftekhary, Meghdad Pirsaheb, Masoumeh Vaezi, Mohammad Fatahi, Hossein Ashtarian, Abdollah Saadatfar, Farzad Jalilian
2021 International Journal of Health and Life Sciences  
model.  ...  Data analysis was performed in SPSS version 16 using bivariate correlation, one-way ANOVA, and t-test. Results: Positive, significant correlations were observed between the CIPP domains.  ...  Sciences.  ... 
doi:10.5812/ijhls.110962 fatcat:vbqwlrlgtjeitdjtn52b5q27ui

Teoretyczne i metodologiczne zasady formułowania modelu jakości życia dla różnych grup populacji
Theoretical and Methodological Principles of Life Quality Model Forming of Different Population Groups

Yulia Pavlova
2017 Prace Naukowe Akademii im Jana Długosza w Częstochowie Kultura Fizyczna  
Domains, sub-domains, indicators, and variables were defined as the main components of the model.  ...  The aim of the researchto describe modern approaches to determining the quality of life and on their basis to propose a comprehensive theoretical model for the explanation of life quality phenomenon and  ...  Conclusions and recommendations for further research Based on a holistic scientific analysis, the model, based on the principles of consistency, hierarchy, equality, determinism, unity of internal factors  ... 
doi:10.16926/kf.2017.16.42 fatcat:ex7y6j7flbbf3fm4zw7gizmjgu

Analyzing the Dimensions of the Quality of Life in Hepatitis B Patientsusing Confirmatory Factor Analysis

Ghassem Abedi, Farideh Rostami, Aliasghar Nadi
2015 Global Journal of Health Science  
For analyzing the data from descriptive statistics and Kolmogrov-Smirnov test, one sample t-test, two stage Confirmatoryfactor analysis, Spss and Lisrel software has been used.  ...  improve life quality.  ...  After conducting two-steps confirmatory factor analysis, we deal with examining the adequacy of fitting model.  ... 
doi:10.5539/gjhs.v7n7p22 pmid:26153200 pmcid:PMC4803937 fatcat:gm2eylwzv5hnrgnnp74jqojqba

The Great Scientific Domains and Society: A Metascience Perspective from the Domain of Computing

Paul S. Rosenbloom
2009 The International Journal of Science and Society  
He received a B.S. degree from Stanford University in mathematical sciences in 1976 (with distinction) and M.S. and Ph.D. degrees in computer science from Carnegie Mellon University (CMU) in 1978 and 1983  ...  Rosenbloom is a Professor of Computer Science at the University of Southern California (USC).  ...  In the life sciences we see the creation, evolution, life and death of both organisms and their constituents.  ... 
doi:10.18848/1836-6236/cgp/v01i01/51493 fatcat:6sby3g2pvzgj3aqul7d3rlcf5y

Transcriptional Evidence For The Involvement Of Myd88 In Flagellin Recognition: Genomic Identification Of Rock Bream Myd88 And Comparative Analysis

N. Umasuthan, S. D. N. K. Bathige, W. S. Thulasitha, I. Whang, J. Lee
2014 Zenodo  
A bipartite domain structure with two domains namely death domain (24-103) coded by 1st exon, and TIR domain (151-288) coded by last 3 exons were identified through in silico analysis.  ...  Moreover, homology modeling of these two domains revealed a similar quaternary folding nature between human and rock bream homologs.  ...  The homology modeling analysis revealed a similar folding pattern between MyD88 domains of human and rock bream homologs (Fig. 2 ).  ... 
doi:10.5281/zenodo.1092982 fatcat:crzjri47avhq5jahzaujalfzca

On Visual Analytics and Evaluation in Cell Physiology: A Case Study [chapter]

Fleur Jeanquartier, Andreas Holzinger
2013 Lecture Notes in Computer Science  
The case study highlights the need for conducting evaluation and improvements in VA in the domain of biomedical science.  ...  Moreover, we demonstrate the applicability of this model and show several shortcomings in the analysis tools functionality and usability.  ...  Life scientists especially in the domain of biomedical science may struggle with the fact, that the process starts with a first data analysis.  ... 
doi:10.1007/978-3-642-40511-2_36 fatcat:voyexuzq75e3hpfmgxhchzadne

Social media's enduring effect on adolescent life satisfaction

Amy Orben, Tobias Dienlin, Andrew K. Przybylski
2019 Proceedings of the National Academy of Sciences of the United States of America  
We found that social media use is not, in and of itself, a strong predictor of life satisfaction across the adolescent population.  ...  In place of a single model, we tested a wide range of theoretically grounded analysis options [data is available on the UK data service (6); code is available on the Open Science Framework (7) ].  ...  Results of a random-intercept cross-lagged panel model specification curve analysis relating social media use and life satisfaction. (Left) Betweenperson correlations.  ... 
doi:10.1073/pnas.1902058116 pmid:31061122 pmcid:PMC6534991 fatcat:5ke7mtsecjhnde35wla4qk4mjq
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