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Trends in life science grid: from computing grid to knowledge grid

Akihiko Konagaya
2006 BMC Bioinformatics  
Grid computing has great potential to become a standard cyberinfrastructure for life sciences which often require high-performance computing and large data handling which exceeds the computing capacity  ...  Computing grid technologies have been matured enough to solve high-throughput real-world life scientific problems.  ...  Acknowledgements The authors express special thanks for the member of the Open Bioinformatics Grid project and anonymous reviewers for their valuable discussion and useful comments for this manuscript.  ... 
doi:10.1186/1471-2105-7-s5-s10 pmid:17254294 pmcid:PMC1764466 fatcat:tlemqfzeljfdbaxa6gw5mid7f4

Grid Computing In Physics And Life Sciences

Heinz Stockinger
2008 Zenodo  
In addition, these sciences are sometimes characterised by scientific collaborations requiring resource sharing which is typically provided by Grid approaches.  ...  Certain sciences such as physics, chemistry or biology, have a strong computational aspect and use computing infrastructures to advance their scientific goals.  ...  This work was funded in part by the EU project EMBRACE Grid which is funded by the European Commission within its FP6 Programme, under the thematic area "Life sciences, genomics and biotechnology for health  ... 
doi:10.5281/zenodo.1086095 fatcat:aqlr32kkb5c5pnlcdo6wrguxnu

Life Science Grid Middleware in a More Dynamic Environment [chapter]

Milena Radenkovic, Bartosz Wietrzyk
2005 Lecture Notes in Computer Science  
In particular we focus on using WSRF to support data integration, workflow enactment and notification management in the leading EPSRC e-Science pilot project.  ...  This paper proposes a model for integrating a higher level Semantic Grid Middleware with Web Service Resource Framework (WSRF) that extends the prototype presented in [1] informed by issues that were identified  ...  All the entities within myGrid have their own unique IDs -Life Science ID (LSID) issued by the central authority.  ... 
doi:10.1007/11575863_46 fatcat:bpn7ulqt45fablgyppvwsrgd5a

Technical support for Life Sciences communities on a production grid infrastructure [article]

Franck Michel, Johan Montagnat, Tristan Glatard
2012 arXiv   pre-print
Support, monitoring, grid infrastructure, life sciences 1.  ...  Within the Life Science Grid Community1 (LSGC), dozens of independent users applications generate all kinds of computing tasks.  ... 
arXiv:1203.2366v1 fatcat:5nbt74wqabalxoottwm3vtmtxy

Grid Information Technology as a New Technological Tool for e-Science, Healthcare and Life Science

Juan Manuel Maqueira Marín, Sebastián Bruque Cámara
2007 Journal of Technology Management & Innovation  
We also argue that the technology may provide an ideal solution for the new challenges facing e-Health and Life Science.  ...  Scientists are taking increasing interest in an emerging technology – Grid Information Technology – that may offer a solution to their current needs.  ...  Keywords: Grid, Grid Information Technology, e-Science, e-Health, Healthcare, Life Science. 1 Juan M.  ... 
doaj:247bf5f3194d44a58edf30cf006ddc14 fatcat:lz3thphc7rbmfjercv4vml7gae

Future opportunities and trends for e-infrastructures and life sciences: going beyond the grid to enable life science data analysis

Afonso M. S. Duarte, Fotis E. Psomopoulos, Christophe Blanchet, Alexandre M. J. J. Bonvin, Manuel Corpas, Alain Franc, Rafael C. Jimenez, Jesus M. de Lucas, Tommi Nyrönen, Gergely Sipos, Stephanie B. Suhr
2015 Frontiers in Genetics  
Here we aim to provide the state of the art of Grid/Cloud computing in EU research as viewed from within the field of life sciences, focusing on key infrastructures and projects within the life sciences  ...  Overall, we aim to provide significant insights into the road ahead by establishing ever-strengthening connections between EGI as a whole and the life sciences community.  ...  FP has been supported by the National Grid Infrastructure NGI_GRNET, HellasGRID, as part of the EGI.  ... 
doi:10.3389/fgene.2015.00197 pmid:26157454 pmcid:PMC4477178 fatcat:njlrkhpe2bf6hhd3fu4wbqjvcq


2006 Grid Computing in Life Sciences  
The life science domain places specific requirements on the Grid infrastructure needed to answer such questions.  ...  The analysis and exploration of a broad array of life science data sets are needed to answer such questions.  ...  formulated to facilitate life science data sharing.  ... 
doi:10.1142/9789812772503_0005 fatcat:7rtexvj4lvh5ddp2ypflh72izy

User-oriented Security Supporting Inter-disciplinary Life Science Research across the Grid

Richard Sinnott, Oluwafemi Ajayi, Jipu Jiang, Anthony Stell, John Watt
2007 New generation computing  
We demonstrate the viability of this approach through a selection of case studies across the complete life science spectrum.  ...  The Grid paradigm provides a compelling model whereby seamless access to these resources can be achieved.  ...  §1 Introduction The life science domain is booming -the explosion of research areas, exponential growth of the associated data sets and the proliferation of new discoveries across and between disciplines  ... 
doi:10.1007/s00354-007-0022-8 fatcat:yx6mbuieqvhylo64rtz3dlkgti


2006 Grid Computing in Life Sciences  
Recently there has been a great demand for extending high throughput life science research to bio-manufacturing. However, there is a gap from life science research to bio-manufacturing.  ...  In this way, database access in a large data grids, high performance computing in a computational grid, and remote device control in a manufacturing grid, can be coupled to a supply chain management system  ...  Collaborative life science R&D not only requires the sharing of bio-data resources but also the integration of bio-operations using various bio-tools.  ... 
doi:10.1142/9789812772503_0019 fatcat:hnblwn7tdrdzrms4q4kse6eqha


2006 Grid Computing in Life Sciences  
., named Grid MP.  ...  computing environment built using Grid MP.  ...  Akihiko Konagaya and Fumikazu Konishi of RIKEN Genomic Sciences Center and Hiroyuki Kobayashi of Sumisho Electronics Co., Ltd. for valuable discussion and contributions to the development of the distributed  ... 
doi:10.1142/9789812772503_0017 fatcat:2uem4gwe5fbu7mbg4mnswbvnxa

Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences

Sung Lee, Taowei David Wang, Nada Hashmi, Michael P. Cummings
2007 Future generations computer systems  
However, there are several barriers to the widespread use of Grid computing in life sciences.  ...  Life science research is becoming evermore computationally intensive.  ...  Grid computing resources available for life science research, and difficulty of using Grid computing.  ... 
doi:10.1016/j.future.2006.07.011 fatcat:hpqaj35qdnekzjy4b4wykphtte

Guest Editorial: Special Section on Grid, Web Services, Software Agents, and Ontology Applications for Life Sciences

Luciano Milanesi, Giuliano Armano, Vincent Breton, Paolo Romano
2007 IEEE Transactions on Nanobioscience  
He is the coordinator of the European BIOINFOGRID Bioinformatics Grid Applications for Life Science and the LITBIO Laboratory of Bioinformatics Technologies.  ...  for health in January 2003 and January 2004, he is involved in several FP6 European projects dealing with grids for life sciences and healthcare (Embrace, EGEE-II, BioinfoGRID, Share).  ... 
doi:10.1109/tnb.2007.897434 fatcat:kihmne4uazcivazs5vgh36c6py

Pinar Del Río geography and connected photovoltaic systems to the grid

Antonio Vázquez Pérez, Liudmila Fuente Pomares, María Rodríguez Gámez
2020 International journal of life sciences & earth sciences  
In these work analyzed the evaluation of the territorial space of the Pinar del Río county was presented that can be used for the development from the connected photovoltaic systems to the grid.  ...  Figure 2 shows the map with the viable areas for the development of photovoltaic systems connected to the grid. Figure 2.  ...  Improving the quality of life in society requires increasing economic development through technological innovation, creating new knowledge that humanizes work, that accelerates the processes of production  ... 
doi:10.31295/ijle.v3n1.139 fatcat:rrcom7bkp5gqzphw3pej4tqmfy

Properties of Aged GFRP Reinforcement Grids Related to Fatigue Life and Alkaline Environment

Francesco Micelli, Marco Corradi, Maria Aiello, Antonio Borri
2017 Applied Sciences  
After this severe conditioning the tests indicate a good tensile strength retention of the GFRP in absence of fatigue loads, while a significant loss in fatigue life was experienced when both alkaline  ...  The objective of this research is to explore the effects of selected aqueous environments and fatigue loading on the mechanical and physical properties of composite grids, made of E-CR (Electrical/Chemical  ...  Figure 4 . 4 GFRP grids after exposure in alkaline bath. (a) Comparison between aged and unaged grid; (b) Aged specimens. Figure 4 . 4 GFRP grids after exposure in alkaline bath.  ... 
doi:10.3390/app7090897 fatcat:tqp32wjlj5by7htnqzul7wdwle

Improving the Network Life Time in Smart Grid Sensor Nodes by Considering Nodes Usage

Yasaman Samadi, Midia Reshadi
2020 SN Computer Science  
Smart grid is one of the most highlighted aspects of internet of things.  ...  This cause to reduce the energy consumption and helps to increase network's life time.  ...  Designing a smart grid with edge nodes and mobile devices are challenging issues.  ... 
doi:10.1007/s42979-020-00348-z fatcat:yriuetzflnabnjswpul3urwsje
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