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Building a Vision for Reproducibility in the Cyberinfrastructure Ecosystem: Leveraging Community Efforts

2020 Supercomputing Frontiers and Innovations  
We leverage an analysis of such workflows to (a) contextualize the 2019 National Academies of Science, Engineering, and Medicine report's recommendations in the HPC setting and (b) envision a path forward  ...  Molecular Dynamics simulations) with in situ analytics.  ...  for improving rigor and transparency in scientific research".  ... 
doi:10.14529/jsfi200106 fatcat:65ngkgmfqjacbb2llj3exmpkei

EDAssistant: Supporting Exploratory Data Analysis in Computational Notebooks with In-Situ Code Search and Recommendation [article]

Xingjun Li, Yizhi Zhang, Justin Leung, Chengnian Sun, Jian Zhao
2021 arXiv   pre-print
This paper presents EDAssistant, a JupyterLab extension that supports EDA with in-situ search of example notebooks and recommendation of useful APIs, powered by novel interactive visualization of search  ...  ., Jupyter Notebook), data scientists rationalize their exploratory data analysis (EDA) based on their prior experience and external knowledge such as online examples.  ...  within the Jupyter Notebook environment, which offers in-situ code search and recommendation as well as novel visual exploration of search results 8 .  ... 
arXiv:2112.07858v1 fatcat:g6stecgg2ngdhpzrdl5fnt236u

Knowledge Services for Experience Factories

Eric Ras, Jörg Rech, Sebastian Weber
2009 Wissensmanagement  
Knowledge services are especiallyv aluable for maturing activities, such as formalization and generalization.W e describe how to leverage Web 2.0 concepts as features of an experience management system  ...  ., the reuse of experience) in software organizations. It supports the collection, processing, management, analysis, and dissemination of experiences made on the job.  ...  The folksonomy feature visualizes the relevance of recommended keywords via a tag cloud in order to assist the user in selecting adequate keywords.  ... 
dblp:conf/wm/RasRW09 fatcat:4agrnmdkg5gdzh63t3w5kemq5i

Lux: Always-on Visualization Recommendations for Exploratory Dataframe Workflows [article]

Doris Jung-Lin Lee, Dixin Tang, Kunal Agarwal, Thyne Boonmark, Caitlyn Chen, Jake Kang, Ujjaini Mukhopadhyay, Jerry Song, Micah Yong, Marti A. Hearst, Aditya G. Parameswaran
2021 arXiv   pre-print
When users print a dataframe in their notebooks, Lux recommends visualizations to provide a quick overview of the patterns and trends and suggests promising analysis directions.  ...  Yet, visually exploring data in dataframes remains tedious, requiring substantial programming effort for visualization and mental effort to determine what analysis to perform next.  ...  However, ration and visual discovery in-situ.  ... 
arXiv:2105.00121v2 fatcat:gphjm3jqdzevbc4f6yvfyjod7i

Exploring the Role of Machine Learning in Scientific Workflows: Opportunities and Challenges [article]

Azita Nouri, Philip E. Davis, Pradeep Subedi, Manish Parashar
2021 arXiv   pre-print
We explore the challenges of in-situ workflows and provide suggestions for improving the performance of their execution using ML techniques.  ...  Moreover, we discuss the possibility of using ML techniques for in-situ operations.  ...  Furthermore, we complement the discussion with key insights into the ML techniques that can be leveraged for in-situ operations, limitations, and suggestions for improving the performance of in-situ execution  ... 
arXiv:2110.13999v1 fatcat:va7e4uacafh5noqqywbk7svxzy

In-situ Workflow Auto-tuning via Combining Performance Models of Component Applications [article]

Tong Shu, Yanfei Guo, Justin Wozniak, Xiaoning Ding, Ian Foster, Tahsin Kurc
2020 arXiv   pre-print
In-situ parallel workflows couple multiple component applications, such as simulation and analysis, via streaming data transfer. in order to avoid data exchange via shared file systems.  ...  We propose here a new auto-tuning method, Component-based Ensemble Active Learning (CEAL), that combines machine learning techniques with knowledge of in-situ workflow structure to enable automated workflow  ...  Acknowledgements This article reports on activities of the Codesign center for Online Data Analysis and Reduction (CODAR) [12] , which is supported by the Exascale Computing Project (17-SC-20-SC), a collaborative  ... 
arXiv:2008.06991v1 fatcat:xdinadcpczdz7luml5bvoigzou

Rethinking User Interfaces for Feature Location

Fabian Beck, Bogdan Dit, Jaleo Velasco-Madden, Daniel Weiskopf, Denys Poshyvanyk
2015 2015 IEEE 23rd International Conference on Program Comprehension  
In situ visualizations augment results and source code with additional information relevant for further exploration.  ...  We introduce In Situ Impact Insight (I3), a novel user interface to support feature location.  ...  The authors from W&M are supported in part by the NSF CCF-1218129 and NSF-1253837 grants.  ... 
doi:10.1109/icpc.2015.24 dblp:conf/iwpc/BeckDVWP15 fatcat:3nzvyj37ujhntk7al24sxvhq54

Snowy: Recommending Utterances for Conversational Visual Analysis [article]

Arjun Srinivasan, Vidya Setlur
2021 arXiv   pre-print
Based on the feedback and observations from the study, we discuss potential implications and considerations for incorporating recommendations in future NLIs for visual analysis.  ...  We present SNOWY, a prototype system that generates and recommends utterances for visual analysis based on a combination of data interestingness metrics and language pragmatics.  ...  ACKNOWLEDGMENTS We thank Clark Wildenradt for his input and suggestions for improving Snowy's interface.  ... 
arXiv:2110.04323v1 fatcat:xa62iefsergc7b2nmobohnrwzi

Facilitating Information Management in Integrated Development Environments through Visual Interface Enhancements

Haipeng Cai
2015 2015 IEEE International Conference on Software Quality, Reliability and Security - Companion  
In the past decades, integrated development environments (IDEs) have been largely advanced to facilitate software engineering tasks and improve developer productivity.  ...  It remarks the primary blockades behind and initially explores some high-level design considerations for overcoming such challenges in the next-generation IDEs.  ...  The author would also like to thank the anonymous reviewers for their valuable comments and suggestions that helped improve this paper over its original version.  ... 
doi:10.1109/qrs-c.2015.46 dblp:conf/qrs/Cai15 fatcat:vfsz72bdrrdg3n5exvsodjda4i

Toward a Bias-Aware Future for Mixed-Initiative Visual Analytics [article]

Adam Coscia
2020 arXiv   pre-print
cognitive biases in situ.  ...  Mixed-initiative visual analytics systems incorporate well-established design principles that improve users' abilities to solve problems.  ...  leveraging the power of visualization for creating insights from information.  ... 
arXiv:2011.09988v1 fatcat:ttuendzirzcgnk5zquazdpjcxu

Helping Users Tackle Algorithmic Threats on Social Media: A Multimedia Research Agenda [article]

Christian von der Weth, Ashraf Abdul, Shaojing Fan, Mohan Kankanhalli
2020 arXiv   pre-print
This paper calls for solutions that combat the algorithmic threats on social media by utilizing machine learning and multimedia content analysis techniques but in a transparent manner and for the benefit  ...  Users often face an unintended loss of privacy, are bombarded with mis-/disinformation, or are trapped in filter bubbles due to over-personalized content.  ...  Any opinions, findings and conclusions or recommendations expressed in this material are those of the author(s) and do not reflect the views of National Research Foundation, Singapore.  ... 
arXiv:2009.07632v1 fatcat:baiy2wzudnbwjd6shmnusudc4u

Making Data and Workflows Findable for Machines

Tobias Weigel, Ulrich Schwardmann, Jens Klump, Sofiane Bendoukha, Robert Quick
2019 Data Intelligence  
a way that leverages machine support for better efficiency.  ...  In this article, we describe how machine capabilities can be extended to make workflows more findable, in particular by leveraging the Digital Object Architecture, common object operations and machine  ...  in-situ visualization in a High-Performance Computing (HPC) workflow to detect errors already during a computing run and restarting the process quickly with modified parameters.  ... 
doi:10.1162/dint_a_00026 fatcat:isu3hizjnjhjtmi5kek5fkmqyi

Technology Leveraging for Infrastructure Asset Management: Challenges and Opportunities

A. Emin Aktan, Ivan Bartoli, S. Gokhan Karaman
2019 Frontiers in Built Environment  
and disutility risk for each distinct limit-states of performance as discussed in the following.  ...  Such systems should be managed just like financial assets, leveraging measurement-based, objective and reliable metrics for documenting their value, performance and condition, and based on their lifecycle  ...  Azari for their support and guidance of their past and ongoing research projects involving technology leveraging for infrastructure asset management.  ... 
doi:10.3389/fbuil.2019.00061 fatcat:m56xx4xuwnfo3isxgikb7film4

TrUMAn: Trope Understanding in Movies and Animations [article]

Hung-Ting Su, Po-Wei Shen, Bing-Chen Tsai, Wen-Feng Cheng, Ke-Jyun Wang, Winston H. Hsu
2021 arXiv   pre-print
Understanding and comprehending video content is crucial for many real-world applications such as search and recommendation systems.  ...  We also provide detailed analysis to pave the way for future research. TrUMAn is publicly available at:  ...  Also, as shown in the third column, the full TrUSt further boosts 0.9 ∼ 1.5 accuracy by leveraging the story embedding. Qualitative Analysis.  ... 
arXiv:2108.04542v3 fatcat:xd43q4pss5dyrgc43m6iaao6jm

Clinical Perspective of 3D Total Body Photography for Early Detection and Screening of Melanoma

Jenna E. Rayner, Antonia M. Laino, Kaitlin L. Nufer, Laura Adams, Anthony P Raphael, Scott W Menzies, H. Peter Soyer
2018 Frontiers in Medicine  
The optimal system for melanoma screening should improve diagnostic accuracy, be time and cost efficient, and accessible to patients across all demographic and socioeconomic groups. 3D total body photography  ...  In this perspective, we discuss clinical examples utilizing 3D total body photography, associated advantages and limitations, and future directions of the technology.  ...  We would also like to acknowledge the generous support of the Princess Alexandra Hospital Private Practice Trust Fund in purchasing the VECTRA 3D total body imaging system.  ... 
doi:10.3389/fmed.2018.00152 pmid:29911103 pmcid:PMC5992425 fatcat:sxoipkrnmvcd5bsmyyeknazkse
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