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Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family

Sudhansu Dash, Jacqueline D. Campbell, Ethalinda K.S. Cannon, Alan M. Cleary, Wei Huang, Scott R. Kalberer, Vijay Karingula, Alex G. Rice, Jugpreet Singh, Pooja E. Umale, Nathan T. Weeks, Andrew P. Wilkey (+2 others)
2015 Nucleic Acids Research  
Legume Information System (LIS), at http:// legumeinfo.org, is a genomic data portal (GDP) for the legume family.  ...  To integrate data sets, LIS provides genome and map viewers, holds synteny mappings among all sequenced legume species and provides a set of gene families to allow traversal among orthologous and paralogous  ...  ACKNOWLEDGEMENTS We would like to thank the many developers of GMOD components used at LIS, particularly including Stephen Ficklin, Lacey Sanderson and Dorrie Main for Tripal, and developers of the Legume  ... 
doi:10.1093/nar/gkv1159 pmid:26546515 pmcid:PMC4702835 fatcat:2cxwekkuu5dxfn6sylkfb75z7i

The genome of cowpea ( Vigna unguiculata [L.] Walp.)

Stefano Lonardi, María Muñoz‐Amatriaín, Qihua Liang, Shengqiang Shu, Steve I. Wanamaker, Sassoum Lo, Jaakko Tanskanen, Alan H. Schulman, Tingting Zhu, Ming‐Cheng Luo, Hind Alhakami, Rachid Ounit (+11 others)
2019 The Plant Journal  
The genome sequence facilitated the identification of a putative syntelog for multiple organ gigantism in legumes.  ...  A revised numbering system has been adopted for cowpea chromosomes based on synteny with common bean (Phaseolus vulgaris).  ...  ACKNOWLEDGEMENTS The authors thank Panruo Wu, Laxmi Buyhan, Zizhong Chen and Tamar Shinar (University of California Riverside, CA, USA) for allowing access to their HPC server; Suresh Iyer, Amy Mraz, Jon  ... 
doi:10.1111/tpj.14349 pmid:31017340 pmcid:PMC6852540 fatcat:gx7qzkg25zanzbpb6rk26y2dku

The genome of cowpea (Vigna unguiculata [L.] Walp.) [article]

Stefano Lonardi, María Muñoz-Amatriaín, Qihua Liang, Shengqiang Shu, Steve I Wanamaker, Sassoum Lo, Jaakko Tanskanen, Alan H Schulman, Tingting Zhu, Ming-Cheng Luo, Hind Alhakami, Rachid Ounit (+11 others)
2019 bioRxiv   pre-print
The genome sequence also facilitated the identification of a putative syntelog for multiple organ gigantism in legumes.  ...  A new numbering system has been adopted for cowpea chromosomes based on synteny with common bean (Phaseolus vulgaris).  ...  Gene family changes in cowpea To identify genes that have significantly increased or decreased in copy number in cowpea, we analyzed a set of 18,543 families from the Legume Information System (https:/  ... 
doi:10.1101/518969 fatcat:r6vu3ydx2rhf3c5mtbbg6ego7m

A chromosome-scale Lotus japonicus Gifu genome assembly indicates that symbiotic islands are not general features of legume genomes [article]

Nadia Kamal, Terry Mun, Dugald Reid, Jie-shun Lin, Turgut Yigit Akyol, Niels Sandal, Torben Asp, Hideki Hirakawa, Jens Stougaard, Klaus F X Mayer, Shusei Sato, Stig U. Andersen
2020 bioRxiv   pre-print
Lotus japonicus is a herbaceous perennial legume that has been used extensively as a genetically tractable model system for deciphering the molecular genetics of symbiotic nitrogen fixation.  ...  The new L. japonicus Gifu reference genome and associated expression data represent valuable resources for legume functional and comparative genomics.  ...  ., et al. 2016, Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. Nucleic Acids Res., 44, D1181-8. 53.  ... 
doi:10.1101/2020.04.17.042473 fatcat:ocunyb5ozjfgfnurkgfb5gqydq

Introducing Beneficial Alleles from Plant Genetic Resources into the Wheat Germplasm

Shivali Sharma, Albert Schulthess, Filippo Bassi, Ekaterina Badaeva, Kerstin Neumann, Andreas Graner, Hakan Özkan, Peter Werner, Helmut Knüpffer, Benjamin Kilian
2021 Biology  
This review provides an overview of the plant genetic resources (PGR) available for wheat.  ...  In addition, we present the status of the use of some of these resources in wheat breeding programs.  ...  Conflicts of Interest: The authors declare no conflict of interest.  ... 
doi:10.3390/biology10100982 pmid:34681081 pmcid:PMC8533267 fatcat:xxv5r3u3bfdsdb2sgpaojnenae