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Learning domain ontologies for Web service descriptions

Marta Sabou, Chris Wroe, Carole Goble, Gilad Mishne
2005 Proceedings of the 14th international conference on World Wide Web - WWW '05  
We describe an automatic extraction method that learns domain ontologies for web service descriptions from textual documentations attached to web services.  ...  We conducted our experiments in the field of bioinformatics by learning an ontology from the documentation of the web services used in my Grid, a project that supports biology experiments on the Grid.  ...  ACKNOWLEDGMENTS We thank the members of the GATE group for their support in the development of the prototype. We also thank W. van Atteveldt, F. van Harmelen and H.  ... 
doi:10.1145/1060745.1060776 dblp:conf/www/SabouWGM05 fatcat:d65ihoi7yjcaza4sfdl3dyqa6u

Learning Domain Ontologies for Semantic Web Service Descriptions

Marta Sabou, Chris Wroe, Carole Goble, Heiner Stuckenschmidt
2005 Social Science Research Network  
In this paper we report on the first stage of research that aims to develop (semi-)automatic ontology learning tools in the context of Web services that can support domain experts in the ontology building  ...  To this end, we developed a framework for (semi-)automatic ontology learning from textual sources attached to Web services.  ...  This work was carried out in the context of WonderWeb, an EU Information Society Technologies (IST) funded project (EU IST 2001-33052).  ... 
doi:10.2139/ssrn.3199264 fatcat:6eamwvic3rce3dvfxh24s3sja4

Learning domain ontologies for semantic Web service descriptions

Marta Sabou, Chris Wroe, Carole Goble, Heiner Stuckenschmidt
2005 Journal of Web Semantics  
In this paper we report on the first stage of research that aims to develop (semi-)automatic ontology learning tools in the context of Web services that can support domain experts in the ontology building  ...  To this end, we developed a framework for (semi-)automatic ontology learning from textual sources attached to Web services.  ...  This work was carried out in the context of WonderWeb, an EU Information Society Technologies (IST) funded project (EU IST 2001-33052).  ... 
doi:10.1016/j.websem.2005.09.008 fatcat:vieeqt3wirg3feoe23vu5ndfda

Mining Semantic Descriptions of Bioinformatics Web Resources from the Literature [chapter]

Hammad Afzal, Robert Stevens, Goran Nenadic
2009 Lecture Notes in Computer Science  
A number of projects (myGrid, BioMOBY, etc.) have recently been initiated in order to organise emerging bioinformatics Web Services and provide their semantic descriptions.  ...  We illustrate the potential of natural language processing not only for mining descriptions of known services, but also for discovering new services that have been described in the literature.  ...  Acknowledgements We are grateful to Franck Tanoh for the evaluation of the extracted service descriptions.  ... 
doi:10.1007/978-3-642-02121-3_40 fatcat:dtpm6iflsrcgbdn74lt2rnu6py

An Ontology for Description of Drug Discovery Investigations

Da Qi, Ross D. King, Andrew L. Hopkins, G. Richard J. Bickerton, Larisa N. Soldatova
2010 Journal of Integrative Bioinformatics  
SummaryThe paper presents an ontology for the description of Drug Discovery Investigation (DDI). This has been developed through the use of a Robot Scientist "Eve", and in consultation with industry.  ...  This enables DDI to be integrated with such related ontologies as the Vaccine Ontology, the Advancing Clinico-Genomic Trials on Cancer Master Ontology, etc.  ...  We thank Dr Andrew Sparkes at Aberystwyth University, Wales for his contribution to the database development.  ... 
doi:10.1515/jib-2010-126 fatcat:6nndaqeqrjfr3mwksccv4wqmcy

An ontology for description of drug discovery investigations

Da Qi, Ross D King, Andrew L Hopkins, G Richard J Bickerton, Larisa N Soldatova
2010 Journal of Integrative Bioinformatics  
The paper presents an ontology for the description of Drug Discovery Investigation (DDI).This has been developed through the use of a Robot Scientist "Eve", and in consultation with industry.  ...  This enables DDI to be integrated with such related ontologies as the Vaccine Ontology, the Advancing Clinico-Genomic Trials on Cancer Master Ontology, etc.  ...  We thank Dr Andrew Sparkes at Aberystwyth University, Wales for his contribution to the database development.  ... 
doi:10.2390/biecoll-jib-2010-126 pmid:20375446 fatcat:mdkaqhaymzeibogp7do5cpht6i

Toward a Unified Description of Battery Data

Simon Clark, Francesca L. Bleken, Simon Stier, Eibar Flores, Casper Welzel Andersen, Marek Marcinek, Anna Szczesna‐Chrzan, Miran Gaberscek, M. Rosa Palacin, Martin Uhrin, Jesper Friis
2021 Advanced Energy Materials  
This review summarizes the current state of ontology development, the needs for an ontology in the battery field, and current activities to meet this need.  ...  An ontology is a data model that represents domain knowledge as a map of concepts and the relations between them.  ...  ontologies in bioinformatics.  ... 
doi:10.1002/aenm.202102702 fatcat:goazyklfyze25jog44m6zu5oxa

Modeling a description logic vocabulary for cancer research

Frank W. Hartel, Sherri de Coronado, Robert Dionne, Gilberto Fragoso, Jennifer Golbeck
2005 Journal of Biomedical Informatics  
addressing certain real world challenges arising in modeling the Thesaurus; and finally, we describe the conversion of NCI Thesaurus from Ontylog into Web Ontology Language Lite.  ...  We describe: the features of Ontylog, a description logic used to build NCI Thesaurus; our methodology for enhancing the terminology through collaboration between ontologists and domain experts, and for  ...  offering valuable comments, Jason Weis who implemented role groups, Eric Mays for many years of collaboration on the Ontylog Classifier and Jim Hendler and Bijan Parsia for their help in developing the  ... 
doi:10.1016/j.jbi.2004.09.001 pmid:15797001 fatcat:5gnldlea2zdbfo3hnimjbxbmg4

A New Semantic Resource Description Framework for Medical Diagnosis based on Gene Ontology

2020 VOLUME-8 ISSUE-10, AUGUST 2019, REGULAR ISSUE  
In this study the approach of implementing autonomic gene computing in medical informatics, in this framework a new semantic resource description network for medical diagnostics based on Gene Ontology,  ...  The web interface for drugs prescription accepts the diseases and symptoms from the domain updated in the database and successfully displays prescribed drugs for each disease  ...  Detailed Description about the Drugs The web interface for Genes Identification system accepts the diseases and symptoms from the domain updated in database and successfully displays are listed in fig.  ... 
doi:10.35940/ijitee.c8324.019320 fatcat:3yqa4n44frc2njk2imx23r3miq

Inflammation ontology design pattern: an exercise in building a core biomedical ontology with descriptions and situations

Aldo Gangemi, Carola Catenacci, Massimo Battaglia
2004 Studies in Health Technology and Informatics  
We use UML class diagrams, description logics, and the DOLCE foundational ontology, augmented with the Description and Situation theory, in order to provide the representational and ontological primitives  ...  An ontology design pattern is proposed as a modelling template for inflammations.  ...  In fact, although reusable components are primarily needed for heavy reasoning services, they are ideally suited for the refinement of ontologies that have been generated through machine learning procedures  ... 
pmid:15853264 fatcat:rgpbutyjkfdt5get4d2smu7gqy

Probabilistic Description Logics under the distribution semantics

Fabrizio Riguzzi, Elena Bellodi, Evelina Lamma, Riccardo Zese, Wolfgang Faber, Domenico Lembo
2015 Semantic Web Journal  
In this paper we present a technique for the integration of probabilistic information in Description Logics (DLs) that is based on the distribution semantics for probabilistic logic programs.  ...  Representing uncertain information is crucial for modeling real world domains.  ...  information on the user requirements and the service descriptions; recommending items to users; extracting and annotating information from the web; automatically performing tasks for users such as making  ... 
doi:10.3233/sw-140154 fatcat:yj3knkmbanapnnm45wwpcmi4uy

Automatically Identifying Bounds on Semantic Annotations for Bioinformatics Web Service Input Parameters [chapter]

Ravinder Singh, Sean Bechhofer, Khalid Belhajjame, Suzanne M. Embury
2010 Lecture Notes in Computer Science  
Semantic annotation of web services is achieved by associating parts of service interface descriptions to concepts defined in a semantic model, such as an ontology.  ...  We have investigated this problem in the bioinformatics domain, where certain characteristics shared by many web services make them a difficult breed to annotate with semantics.  ...  Since many services in the bioinformatics domain are developed on an as-needed basis, such web services typically have poor quality descriptions [3] .  ... 
doi:10.1007/978-3-642-16985-4_21 fatcat:vf3qtxmoj5eynpxfiipz4rr724

Technical Perspectives on Knowledge Management in Bioinformatics Workflow Systems

Walaa N., M.Sabih Aksoy
2015 International Journal of Advanced Computer Science and Applications  
This article focuses on the knowledge management of in silico experimentation in bioinformatics workflow systems.  ...  Thus the management of knowledge is therefore an important issue for life scientists.  ...  In [21] , the author presented Sesame a semantic bioinformatics workflow design system with new ontology for bioinformatics tools/services.  ... 
doi:10.14569/ijacsa.2015.060126 fatcat:wskynuwvzvfijb4cymmpu4to4e

Current usage of Component based Principles for Developing Web Applications with Frameworks: A Literature Review

Matija Krznar, Ivan Svogor
2016 Interdisciplinary Description of Complex Systems  
Most of all we are interested in which way components are used, which web development frameworks are being used, for which domains is component based web development most popular and successful, etc.  ...  In the early phase of Web 2.0 appearance, it was also popular for web application development.  ...  pages. 3D Graphics Web applications (e-Commerce, e-learning, 3D collaboration, …) [A9] Enhance reusability and productivity for shot timeline projects in the field of bioinformatics to integrate  ... 
doi:10.7906/indecs.14.2.14 fatcat:osloo7jhbjffzi5pnhl75kj3cm

A Semantic Service Environment: A Case Study in Bioinformatics [chapter]

Stephen Potter, Stuart Aitken
2005 Lecture Notes in Computer Science  
This paper presents its authors' experiences of the application and use of these emerging technologies in a displicine in which web services already play a key role: bioinformatics.  ...  In recent years, web services have become increasingly important components of the scientific methodology of certain domains.  ...  Consequently, bioinformatics presents an opportunity to apply emerging semantic web services technologies and standards to an existing set of services, and, in so doing, to learn more about the engineering  ... 
doi:10.1007/11431053_47 fatcat:h3imu3aowrd57lg7qslwgwcg2q
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