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LabPipe: an extensible bioinformatics toolkit to manage experimental data and metadata

Bo Zhao, Luke Bryant, Rebecca Cordell, Michael Wilde, Dahlia Salman, Dorota Ruszkiewicz, Wadah Ibrahim, Amisha Singapuri, Tim Coats, Erol Gaillard, Caroline Beardsmore, Toru Suzuki (+7 others)
2020 BMC Bioinformatics  
The toolkit allows re-usable configurations to be defined for experiment metadata and local data collection, and handles metadata entry and linkage of data.  ...  Conclusions LabPipe provided a consistent, controlled approach for handling metadata and experimental data collection, collation and linkage in the exemplar study and was flexible enough to deal effectively  ...  We would also like to thank the anonymous reviewers who provided some excellent comments and suggestions which we have integrated into this manuscript.  ... 
doi:10.1186/s12859-020-03908-5 pmid:33267792 fatcat:kjk56orxwnh2tg2gnsjlqif55a