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Kepler/pPOD: Scientific Workflow and Provenance Support for Assembling the Tree of Life
[chapter]
2008
Lecture Notes in Computer Science
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The complexity of scientific workflows for analyzing biological data creates a number of challenges for current workflow and provenance systems. ...
We present an extended version of the Kepler scientific workflow system to address these challenges, tailored for the systematics community. ...
Conclusion and Future Work Kepler/pPOD supports the automation of phylogenetics workflows and the recording and visualization of data provenance for individual workflow runs. ...
doi:10.1007/978-3-540-89965-5_9
fatcat:vyhyyedu3fbypehpnnae5dhevi
Introducing W.A.T.E.R.S.: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences
2010
BMC Bioinformatics
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A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2012; you can also visit the original URL.
The file type is application/pdf.
One advantage of WATERS over other comprehensive tools is that the use of the Kepler workflow system facilitates result interpretation and reproducibility via a data provenance sub-system. ...
Furthermore, new "actors" can be added to the workflow as desired and we see WATERS as an initial seed for a sizeable and growing repository of interoperable, easyto-combine tools for asking increasingly ...
Acknowledgements We are grateful to Srijak Bhatnagar and Jenna Morgan for assistance with preliminary testing of WATERS. ...
doi:10.1186/1471-2105-11-317
pmid:20540779
pmcid:PMC2898799
fatcat:gklvji3cnzg5xjdic2eglyvalu