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Using the PubAnnotation ecosystem to perform agile text mining on Genomics & Informatics: a tutorial review

Hee-Jo Nam, Ryota Yamada, Hyun-Seok Park
2020 Genomics & Informatics  
During the Biomedical Linked Annotation Hackathon 6 (BLAH6), we experimented with converting, annotating, and updating 301 PMC full-text articles of Genomics & Informatics using PubAnnotation, a system  ...  The prototype version of the full-text corpus of Genomics & Informatics has recently been archived in a GitHub repository.  ...  Introduction Genomics & Informatics is the official journal of the Korea Genome Organization.  ... 
doi:10.5808/gi.2020.18.2.e13 pmid:32634867 fatcat:dzo2bpwfpnhk3jkyr6shemxs74

Acquisition of Service Practical Knowledge Based on Ontologized Medical Workflow

Taisuke Ogawa, Tomoyoshi Yamazaki, Mitsuru Ikeda, Muneou Suzuki, Kenji Araki, Koiti Hasida
2011 Transactions of the Japanese society for artificial intelligence  
In this paper, the author propose a method to model the sense of value of each medical staff as his/her understanding about medical service workflow, and to obtain the practical knowledge using the models  ...  But each medical staff has his/her own sense of value that comes from his/her expertness. Therefore the practical knowledge sometimes conflicts.  ...  .: GLIF3: a representation for- mat for sharable computer-interpretable clinical practice guidelines, Journal of Biomedical Informatics, Vol.37, Issue 3, p.147-161, 2004.  ... 
doi:10.1527/tjsai.26.461 fatcat:33pvuoyiknavdclsxoolvnw23i

Recommendations of the International Medical Informatics Association (IMIA) on Education in Biomedical and Health Informatics

J. Mantas, E. Ammenwerth, G. Demiris, A. Hasman, R. Haux, W. Hersh, E. Hovenga, K. C. Lun, H. Marin, F. Martin-Sanchez, G. Wright
2010 Methods of Information in Medicine  
and health informatics (BMHI), particularly international activities in educating BMHI specialists and the sharing of courseware.  ...  Informatics Education.  ...  Acknowledgements These revised recommendations are the result of the task force team established by the IMIA Working Group on Health and Medical Informatics Education in 2006 [81] .  ... 
doi:10.3414/me5119 pmid:20054502 fatcat:ecynhanetvehzir55g62c5wy34

Biomedical informatics and translational medicine

Indra N Sarkar
2010 Journal of Translational Medicine  
the sub-disciplines of biomedical informatics (e.g., bioinformatics, imaging informatics, clinical informatics, and public health informatics).  ...  Based on contributions and advancements in each of these topic areas, the article proposes that biomedical informatics practitioners ("biomedical informaticians") can be essential members of translational  ...  Acknowledgements The author thanks members of the Center for Clinical and Translational Science at the University of Vermont, especially Drs. Richard A. Galbraith and Elizabeth S.  ... 
doi:10.1186/1479-5876-8-22 pmid:20187952 pmcid:PMC2837642 fatcat:fhz6xuovcvcfdcj5kynpvtia6q

THC volume 4 issue 1 Cover and Front matter

1988 International Journal of Technology Assessment in Health Care  
47 Bryan Jennett The Role and Function of Professional Journals in the Transfer of Information 51 George D.  ...  89 Monica Johnsson Update on Assessment Activities: United States Perspective 95 Itzhak Jacoby Transfer of Information: A Note on the Role of Professional Societies 107 Niels Tygstrup Epilogue  ... 
doi:10.1017/s0266462300003172 fatcat:gqzxaes4lffmdhydx4eun36zky

Letter to the Editor

Walter Daelemans, Antal van den Bosch
2007 Computational Linguistics  
Journal of Biomedical Informatics, 37(1):43-53. Tanabe, L. and J. Wilbur. 2002. Tagging gene and protein names in biomedical text. Bioinformatics, 18:1124-1132.  ...  Information needs of clinical teams: Analysis of questions received by the clinical informatics consult service. Bulletin of the Medical Library Association, 89(2):177-184.  ... 
doi:10.1162/coli.2007.33.1.1 fatcat:norwcklq3jbhbioa4lotsbjhny

IMIA's Working Groups and Special Interest Groups

Evelyn J.S. Hovenga
2006 IMIA Yearbook of Medical Informatics  
The journal received Medline listing in September 2003, and since then is receiving an increasing volume of submissions from international sources.  ...  There is no possibility of critically analyzing papers in biomedical journals without understanding principles of statistics.  ...  of free/libre and open source solutions within health, healthcare and health informatics.  ... 
doi:10.1055/s-0038-1638497 fatcat:6ljzyjss4jcjhhsorh2hqxs2r4

Sensor, Signal and Image Informatics

T. Aach, H. Witte, T.M. Lehmann
2006 IMIA Yearbook of Medical Informatics  
saving in CT, C-arm X-ray imaging systems for volume imaging, and the replacement of dose-intensive CTbased diagnostic with harmonic ultrasound imaging.  ...  To cover the broad spectrum of publications in the field of biomedical image processing, six papers are focused.  ...  Processing a set or map of onedimensional (1D) electrical signals captured continuously over time is called biomedical signal informatics, while the processing of two-dimensional (2D) spatial data, volumes  ... 
doi:10.1055/s-0038-1638479 fatcat:xkya2vy7tna2pghydqjz72w3ay

Human Factors and Organizational Issues Section Synopsis IMIA Yearbook 2021

Yalini Senathirajah, Michelle Hribar, Section Editors of the IMIA Yearbook Section on Human Factors and Organizational Issues
2021 IMIA Yearbook of Medical Informatics  
issues in biomedical informatics.  ...  Objective: To select the best papers that made original and high impact contributions in the area of human factors and organizational issues in biomedical informatics in 2020.  ...  reviewers for their contribution to the selection process of the Human Factor and Organizational Issues section for the IMIA Yearbook 2021.  ... 
doi:10.1055/s-0041-1726524 pmid:34479383 fatcat:yxr73z5xn5dfxi6rch4vfomane

Public Health Informatics [chapter]

Martin LaVenture, David A. Ross, William A. Yasnoff
2013 Biomedical Informatics  
Students will acquire a basic understanding of informatics in public health practice, and be able to apply the skills of using some informatics tools in public health practices.  ...  Public health informatics is the systematic application of information and computer science and technology to public health practice, research and learning.  ...  What is biomedical informatics? Journal of Biomedical Informatics 43 (2010) 104-110 • Alla Kesselman, PHD, et. al.  ... 
doi:10.1007/978-1-4471-4474-8_16 fatcat:lmbuixyrdfg47ccwnqlbyl2m7y

Donald A.B. Lindberg, pioneer in biomedical and health informatics: His involvement in creating professional organizations

Jan H. van Bemmel, Marion J. Ball, Edward H. Shortliffe
2022 Information Services and Use  
Among the many contributions of Donald A.B. Lindberg was his work on behalf of a variety or professional organizations in the field of biomedical and health informatics.  ...  Examples include his role in the development of organizations themselves (e.g., the International Medical Informatics Association, the American College of Medical Informatics, and the American Medical  ...  Lindberg: His involvement in creating professional organizations Many of them hang in various areas of the National Library of Medicine.  ... 
doi:10.3233/isu-210141 pmid:35600129 pmcid:PMC9116204 fatcat:ubztqtm57jehraa5d3j6v2ati4

Medical Informatics in China: Healthcare IT Trends, Academic and Research Developments

S. Luo, K. Zhang, B. Li
2010 IMIA Yearbook of Medical Informatics  
Results: Biomedical and Health Informatics has grown considerably during the past decade in China, and is an important component of proposed government planning that includes development of healthcare  ...  Conclusions: China's challenges and opportunities in biomedical informatics and healthcare IT are considerable, with the former requiring greater promotion of academic research and educational opportunities  ...  Besides clinical informatics, bioinformatics, imaging informatics and public health informatics are all included in biomedical informatics more generally.  ... 
doi:10.1055/s-0038-1638700 fatcat:656eg6bc6fhqrmkyiv7ivzycoa

Informatics and standards for nanomedicine technology

Dennis G. Thomas, Fred Klaessig, Stacey L. Harper, Martin Fritts, Mark D. Hoover, Sharon Gaheen, Todd H. Stokes, Rebecca Reznik-Zellen, Elaine T. Freund, Juli D. Klemm, David S. Paik, Nathan A. Baker
2011 Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology  
These data are large in volume, diverse in content, and are beset with gaps and ambiguities in the description and characterization of nanomaterials.  ...  There are several issues to be addressed concerning the management and effective use of information (or data), generated from nanotechnology studies in biomedical research and medicine.  ...  Center for Biomedical Ontology for their support of nanomedicine informatics through the NCBO Bioportal, Resource Index, and caOBR.  ... 
doi:10.1002/wnan.152 pmid:21721140 pmcid:PMC3189420 fatcat:x4nlyhsdxrgxtcq7ihabv3pwsy

EFMI Working and Project Groups - Overview and Current Activities

Alexander Hörbst, Alfred Winter, Lacramioara Stoicu-Tivadar
2015 IMIA Yearbook of Medical Informatics  
International Journal of Medical Informatics 2014; 83, 1: 57-69. • Uribe G, Lopez D, Blobel B. Towards Automated Biomedical Ontology Harmonization. Stud Health Technol Inform 2014; 200: 62-68.  ...  The Journal of Innovation in Health Informatics remains the journal of choice for the working group; SdeL is the Editor with other key members of the working group involved with  ...  common translational infostructure for the currently distinct environments of biomedical research and health care • Support studies focusing on informatics underlying translational research and medicine  ... 
doi:10.1055/s-0038-1638977 fatcat:752htfm6lfeodmkz44nznmb7zy


Oommen John, Louise Schaper, CP Wong, Pandula Siribaddana, In Young Choi, Alvin Marcelo, Vajira H. W. Dissanayake
2020 IMIA Yearbook of Medical Informatics  
The abstracts were published in the Sri Lanka Journal of Biomedical Informatics (https://  ...  The Society continued its main roles of supporting the University of Colombo to conduct its MSc in Biomedical Informatics and MD in Health Informatics courses.  ... 
doi:10.1055/s-0040-1701977 fatcat:xfrnxsheercilijfwnujwscnfm
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