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TRTools: a toolkit for genome-wide analysis of tandem repeats [article]

Nima Mousavi, Jonathan Margoliash, Neha Pusarla, Shubham Saini, Richard Yanicky, Melissa Gymrek
2020 bioRxiv   pre-print
A rich set of tools have recently been developed for performing genome-wide genotyping of tandem repeats (TRs). However, standardized tools for downstream analysis of these results are lacking. To facilitate TR analysis applications, we present TRTools, a Python library and a suite of command-line tools for filtering, merging, and quality control of TR genotype files. TRTools utilizes an internal harmonization module making it compatible with outputs from a wide range of TR genotypers.
doi:10.1101/2020.03.17.996033 fatcat:qbuyi3o5cfdujdarqeoaj2wdvu

Efficient and Safe Exploration in Deterministic Markov Decision Processes with Unknown Transition Models [article]

Erdem Bıyık, Jonathan Margoliash, Shahrouz Ryan Alimo, Dorsa Sadigh
2019 arXiv   pre-print
We propose a safe exploration algorithm for deterministic Markov Decision Processes with unknown transition models. Our algorithm guarantees safety by leveraging Lipschitz-continuity to ensure that no unsafe states are visited during exploration. Unlike many other existing techniques, the provided safety guarantee is deterministic. Our algorithm is optimized to reduce the number of actions needed for exploring the safe space. We demonstrate the performance of our algorithm in comparison with baseline methods in simulation on navigation tasks.
arXiv:1904.01068v1 fatcat:kdbirznosngcpdioji3odsideq

NEUROSCIENCE: Mirror Neurons May Help Songbirds Stay in Tune

G. Miller
2008 Science  
"These were damned difficult experiments," says Daniel Margoliash, a birdsong researcher at the University of Chicago in Illinois.  ...  In the new study, neuroscientists Jonathan Prather, Richard Mooney, and colleagues at Duke University mounted an ultralightweight device on the heads of swamp sparrows that enabled them to record the activity  ... 
doi:10.1126/science.319.5861.269a pmid:18202262 fatcat:ldlbcoloezhfnimnralhnznmii

Page 1952 of The Journal of Neuroscience Vol. 25, Issue 8 [page]

2005 The Journal of Neuroscience  
, 1983; Margoliash and Fortune, 1992; Lewicki, 1996; Theunissen and Doupe, 1998; Mooney, 2000; Coleman and Mooney, 2004).  ...  Neuroscience, February 23, 2005 + 25(8):1952-1964 Behavioral/Systems/Cognitive The HVC Microcircuit: The Synaptic Basis for Interactions between Song Motor and Vocal Plasticity Pathways Richard Mooney and Jonathan  ... 

Page 1563 of The Journal of Neuroscience Vol. 23, Issue 4 [page]

2003 The Journal of Neuroscience  
Levitt Jonathan B. Levitt Pat Levitzki Alexander Lev-Ram Varda Lewin Gary R. Li Xiao-Jiang Liberman M. Charles Lichtman Jeff W. Lidow Michael S. Lieberman Jeffrey A. Liem Ronald K.H. Light Alan R.  ...  Marder Eve Maren Stephen Maret Wolfgang Margiotta Joseph Margoliash Daniel Margolis Frank L. Margolis Richard Mariani Jean Marinelli Michela Marino Michael J. Mark Gregory Markey Sanford P.  ... 

Page 682 of American Society for Microbiology. ASM News Vol. 58, Issue 12 [page]

1992 American Society for Microbiology. ASM News  
Albert Barker, University of Califor- nia, Berkeley Jonathan R. Beckwith, Harvard Medi- cal School Howard C. Berg, Harvard University Paul E. Berg, Stanford University Med- ical Center J.  ...  Lodish, Massachusetts Insti- tute of Technology David Luck, Rockefeller University Boris Magasanik, Massachusetts Insti- tute of Technology Emanuel Margoliash, University of Illi- nois at Chicago Maclyn  ... 

A Tale of Two Crocoducks: Creationist Misuses of Molecular Evolution

James R. Hofmann
2014 Science & Education  
(Margoliash 1963, p. 677 ). Margoliash also included the relevant data to confirm these evolutionary predictions.  ...  Much more influential in this regard would be Jonathan Sarfati, a wellknown author and spokesman for Creation Ministries International.  ... 
doi:10.1007/s11191-014-9696-8 fatcat:5kmhcj6tdbdwrm7ma4pcqznfri

Subject Index to Volume 30

2006 Cognitive Science  
Michael Masson Teenie Matlock Mohan Matthen Jonathan Maxwell Josh McDermott Scott McDonald Matthew McGlone John Minda Toben Mintz Stephen Mitroft Padraic Monaghan Raymond Mooney Margaret Munger Gregory  ...  Lasnik Dan Levin Daniel Levine Roger Levy* Stephan Lewandowsky Richard Lewis Ping Li Alexandre Linhares Max Louwerse Brian MacWhinney Joe Magliano Paul Maglio Asifa Majid Barbara Malt David Mandel Daniel Margoliash  ... 
doi:10.1207/s15516709cog3006_9 fatcat:nxjowkoz5rdonav4ppsspqjrfi

Page 2363 of Psychological Abstracts Vol. 91, Issue 6 [page]

2004 Psychological Abstracts  
., 16411 Marcusson, Jan, 15120 Marezewski, Philippe, 16293 Marder, Karen, 15075 Marek, Pam, 17623 Margis, Regina, 16453 Margoliash, Daniel, 15450, 15491 Margulis, Stephen T., 16240, 16241 Mariko, Mamadou  ...  16094 Matsuhashi, Masao, 15520, 16796 Matsui, Toshifumi, 16608 Matsukawa, Atsuko, 15358 Matsumoto, Naoyuki, 15525 Matsumoto, Riki, 16796 Matsuo, Shin-Ichiro, 15543 Matsuura, Yoshifusa, 15205 Mattanah, Jonathan  ... 

Page 1853 of Psychological Abstracts Vol. 79, Issue 4 [page]

1992 Psychological Abstracts  
., 12046 Margoliash, Daniel, 11698 Margolis, Howard, 14526 Margolis, Jonathan, 13075 Margolis, Marvin, 13873 Mariorenzi, Roberto, 13474 = joribanks, Kevin, 12332, 14726 , Mordechai, 14215,14299 Markar  ... 

Linear and nonlinear auditory response properties of interneurons in a high-order avian vocal motor nucleus during wakefulness

Jonathan N. Raksin, Christopher M. Glaze, Sarah Smith, Marc F. Schmidt
2012 Journal of Neurophysiology  
2000; Fortune and Margoliash 1992) .  ...  1986; Mooney 2000; Sutter and Margoliash 1994) .  ... 
doi:10.1152/jn.01003.2009 pmid:22205651 pmcid:PMC3331603 fatcat:7ljqplbzofdxncqgtw6gnlgm7i

Page 3395 of Psychological Abstracts Vol. 86, Issue 8 [page]

1999 Psychological Abstracts  
., 25367 Mareschal, Isabelle, 23394 Margison, Frank, 25394 Margoliash, Daniel, 23314 Marian, Viorica, 23152 Maricq, Hildegard R., 22868 Marin, Carlos Carrero, 26016 Maris, Eric, 22933 Marjanovic, Olivera  ...  Miyazato, Hiroshi, 23334 Mizrachi, Beverly, 23845 Mogen, Kim, 25748 Mogil, Jeffrey S., 23524 Mohamed, Somaia, 24604 Mohay, Heather, 25772 Mohl, B., 23336 Mohler, Gregor, 23626 Mohr, David C., 24832 Mohr, Jonathan  ... 

Page 901 of Psychological Abstracts Vol. 86, Issue 3 [page]

1999 Psychological Abstracts  
Dave, Amish S.; Yu, Albert C. & Margoliash, Daniel.  ...  Coulson, Seana; King, Jonathan W. & Kutas, Marta. (U Arizona, Dept of Psychology, Tucson, AZ) ERPs and domain speci- ficity: Beating a straw horse.  ... 

Auditory signal processing in communication: Perception and performance of vocal sounds

Jonathan F. Prather
2013 Hearing Research  
, 1986; Meliza and Margoliash, 2012) .  ...  ., 2008; Sakata and Brainard, 2008; Schmidt, 2003; Troyer and Doupe, 2000; Yu and Margoliash, 1996) , and cells in each pathway receive auditory input (Katz and Gurney, 1981; Margoliash, 1986; Mooney,  ... 
doi:10.1016/j.heares.2013.06.007 pmid:23827717 pmcid:PMC3818290 fatcat:3yxgmhghgbfrzcasqyhh3ydowq

One Click, Two Clicks: The Past Shapes the Future in Auditory Cortex

Jonathan Fritz, Shihab Shamma, Mounya Elhilali
2005 Neuron  
They confirmed earlier results from exin the anesthetized bird (Margoliash and Fortune, 1992), tracellular recording and showed that, for interclick inand in auditory cortex in the anesthetized cat (Brosch  ...  However, they Jonathan Fritz, Shihab Shamma, also observed a population of cells in the auditory corand Mounya Elhilali tex of the rabbit that showed recovery functions that Center for Acoustic and Auditory  ... 
doi:10.1016/j.neuron.2005.07.009 pmid:16055055 fatcat:2t6ddiss6jfupepdpqioj7odui
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