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JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information

M. Scheer, F. Klawonn, R. Munch, A. Grote, K. Hiller, C. Choi, I. Koch, M. Schobert, E. Hartig, U. Klages, D. Jahn
2006 Nucleic Acids Research  
A novel program suite was implemented for the functional interpretation of high-throughput gene expression data based on the identification of Gene Ontology (GO) nodes.  ...  The focus of the analysis lies on the interpretation of microarray data from prokaryotes.  ...  This work was funded by the German Federal Ministry of Education and Research for the Bioinformatics Competence Center 'Intergenomics' (Grant No. 031U210D) and the Sonderforschungsbereich 573 (From Gene  ... 
doi:10.1093/nar/gkl329 pmid:16845060 pmcid:PMC1538798 fatcat:blf5xwlydnetllrkemacbiug2u

Open source libraries and frameworks for biological data visualisation: A guide for developers

Rui Wang, Yasset Perez-Riverol, Henning Hermjakob, Juan Antonio Vizcaíno
2015 Proteomics  
In this review, we introduce a collection of open source or free to use libraries and frameworks for creating data visualisation, covering the generation of a wide variety of charts and graphs.  ...  Data visualisation is increasingly used as the key to unlock this data, going from hypothesis generation to model evaluation and tool implementation.  ...  JProGO is a tool for functional interpretation of prokaryotic microarray data that uses JFreeChart to draw the expression profile of the genes belonging to a specific GO node.  ... 
doi:10.1002/pmic.201400377 pmid:25475079 pmcid:PMC4409855 fatcat:xtwiinjapbb2tjjhxazfgkn67e