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S1d1-5 Water and Weak Interactions(S1-d1: "Structure and Function of Weak Interactions in Protein Molecules",Symposia,Abstract,Meeting Program of EABS & BSJ 2006)

Qing Ji, Bo Zhang, Hui Zhang, Yan-bin Huang, Xiu-xin Zhang, Chun-xia Yang
2006 Seibutsu Butsuri  
From the dynamical ana]ysis of a motor protcin (kincsin) we found that motor protein could change thc atnplitudc of thc lntrarnoleeulaT interaction in a largc range corresponding to different water pepuiatiolls  ...  This mechanism let us iniagine that we can switch the regioseTectivity of HO if we can controt an orientation of the heme in HO so thAt the other meso pesitien is placed ut the nearest position fbom the  ...  that motor protein could change thc atnplitudc of thc lntrarnoleeulaT interaction in a largc range corresponding to different water pepuiatiolls uroulld.  ... 
doi:10.2142/biophys.46.s107_3 fatcat:6cg5arre35c2hiaj74c3ixr55u

Interaction programming

Harold Thimbleby
2009 Proceedings of the 27th international conference extended abstracts on Human factors in computing systems - CHI EA '09  
Interaction programming bridges the gap between interaction design and programming, but it has not yet been related directly to mainstream development practice.  ...  This paper presents UI model discovery tools to enable existing systems and traditional development processes to benefit from interaction programming tools and methods.  ...  This paper presents a technique that links conventional development techniques with the advantages of interaction programming, as elaborated in Press On.  ... 
doi:10.1145/1520340.1520576 dblp:conf/chi/Thimbleby09 fatcat:6mwrndgiobaingcfrq23unz62i

S2d1-5 Photolysis Pathway of Meta II(S2-d1: "Protein-Protein Interaction in the Signal Transduction of Rhodopsin",Symposia,Abstract,Meeting Program of EABS & BSJ 2006)

Franz J. Bartl
2006 Seibutsu Butsuri  
causes the srructural changes ef ppR and the interaction changcs of pHtrll.  ...  Light-induced interaction changes of pharaonis phoborhodopsin-pHtrll complex studied by FTLIR speetrescopy OMljiFurutanii': iDept, of Mat.  ...  In the symposium, I wil] prcscnt thc reccnt trial for detecting the protein-pToteim interaction in rnore physiological condition as well.  ... 
doi:10.2142/biophys.46.s122_4 fatcat:22iet7djljf6raqnh7eme56ibq

1P577 Efficient calculation of electrostatic interaction in biomolecular simulation revisited(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Jiro Shimada, Takumi Washio, Hiroaki Fukunishi, Toshikazu Takada
2006 Seibutsu Butsuri  
There has becn grcat ct'fort toward efficicnt calculations of electrostatic interactions in bie-motecular simulations, lhc nicthod so far develeped includes, Ewald, PPPM, PPPC, PME, FFTI FMM, vurious tree  ...  PME rnethod, In rnolecular simulatiuns, evaluatiun el' the electrostatic interactions in the periodic bouiidmy system ls a troublesomc problcm due to their long-range natuTe.  ... 
doi:10.2142/biophys.46.s291_1 fatcat:twewnsaw4vakro4uqszettwplu

S2d1-1 Protein-protein interaction in rhodopsins : What can we learn from the light-driven system?(S2-d1: "Protein-Protein Interaction in the Signal Transduction of Rhodopsin",Symposia,Abstract,Meeting Program of EABS & BSJ 2006)

Hideki Kandori
2006 Seibutsu Butsuri  
In this symposium, we 1ike to discuss Lhe mechunism of pretein-protein interaction in rhndopsins. particularly from the biophysicat point of view.  ...  Protein-protein interaction is u funtiamental prucess in biulogy. and understanding of the mechanism is one ef Lhe goals in life science.  ...  In this symposium, we 1ike to discuss Lhe mechunism of pretein-protein interaction in rhndopsins. particularly from the biophysicat point of view.  ... 
doi:10.2142/biophys.46.s121_4 fatcat:rwvkxy3y7bas7efzf5275ua3mq

S2c2-4 Nonspecific nucleases in cell defense and cell death(S2-c2: "Structural biology reveals macromolecular interaction",Symposia,Abstract,Meeting Program of EABS & BSJ 2006)

Hanna S. Yuan
2006 Seibutsu Butsuri  
In eukaryotes, severul apoptotic DNasas. such us Endo G and CAD, have been identified that arc activated during programmed eell death pathwuys.  ...  , and is hydregen-bollded to the muill chain of resldues in the helices.  ...  In eukaryotes, severul apoptotic DNasas. such us Endo G and CAD, have been identified that arc activated during programmed eell death pathwuys.  ... 
doi:10.2142/biophys.46.s128_3 fatcat:lxts3zpqbfdlzhzh6knxq4gv6u

S1d1-3 Control of Regioselectivity of Heme Oyxgenase by Reconstruction of Hydrogen-Bonding Interactions between Substrate and Enzyme(S1-d1: "Structure and Function of Weak Interactions in Protein Molecules",Symposia,Abstract,Meeting Program of EABS & BSJ 2006)

Hiroshi Fujii
2006 Seibutsu Butsuri  
From the dynamical ana]ysis of a motor protcin (kincsin) we found that motor protein could change thc atnplitudc of thc lntrarnoleeulaT interaction in a largc range corresponding to different water pepuiatiolls  ...  This mechanism let us iniagine that we can switch the regioseTectivity of HO if we can controt an orientation of the heme in HO so thAt the other meso pesitien is placed ut the nearest position fbom the  ...  that motor protein could change thc atnplitudc of thc lntrarnoleeulaT interaction in a largc range corresponding to different water pepuiatiolls uroulld.  ... 
doi:10.2142/biophys.46.s107_1 fatcat:xnrjhfqfjbggpainyznolpybf4

1P428 Inter- and Intra-Molecular Interaction Involved in Photobleaching Bacteriorhodopsin Reconstituted in DMPC Liposome(17. Light driven system,Poster Session,Abstract,Meeting Program of EABS &BSJ 2006)

Rumi NEGISHI, Masashi SONOYAMA, Shigeki MITAKU
2006 Seibutsu Butsuri  
However, the balance between the interand ill"va-interactions for the restoring force is not known yet.  ...  The peak of fto70 observed in the iSN NMR spectra ofbR disappeared in those of bO, that is attributecl to the structural and dynamical ehange in the S-sheet strutture in BC-loop by thc rcmoval of rctinal  ... 
doi:10.2142/biophys.46.s253_4 fatcat:jriklcw2erbz3huvwsnfk5jfla

S1d1-1 Hydrogen Bond Interaction of the FMN in Complex I of the Mitochondrial Respiratory Chain(S1-d1: "Structure and Function of Weak Interactions in Protein Molecules",Symposia,Abstract,Meeting Program of EABS & BSJ 2006)

Takashi Ogura, Hidehisa Sugiyama, Satoru Yamaguchi, Kyoko Shinzawa-Itoh, Shinya Yoshikawa
2006 Seibutsu Butsuri  
Based on the frcqucncy of 125 1 cm i. thc hydrogcn bond strcngth of the N3-H in Complex I ls significantly weaker than in aqueous solutien, Sldl-2 Study on the quaternary structural change of human hemoglobin  ...  Howcycr, gcncrally it is difficult to dctect a partially 1igand-bound fo"n of Hb in u solution condition. becuuse most of Hb molecules are present in either no ligandor fully ligand-bound fonn.  ...  ung epitheliat celts. subeetlular ce]1 signaling, and in viLrt, fertilization en a chip. Sldl-1 Hydrogen Bond Interaction ef the FMN in Mitochondrial Respiratory Chain OTakashi Ogura.  ... 
doi:10.2142/biophys.46.s106_3 fatcat:ofrsdpwgazbopihuacsik3olui

S2d1-3 Light-induced interaction changes of pharaonis phoborhodopsin-pHtrII complex studied by FT-IR spectroscopy(S2-d1: "Protein-Protein Interaction in the Signal Transduction of Rhodopsin",Symposia,Abstract,Meeting Program of EABS & BSJ 2006)

Yuji Furutani
2006 Seibutsu Butsuri  
causes the srructural changes ef ppR and the interaction changcs of pHtrll.  ...  Light-induced interaction changes of pharaonis phoborhodopsin-pHtrll complex studied by FTLIR speetrescopy OMljiFurutanii': iDept, of Mat.  ...  In the symposium, I wil] prcscnt thc reccnt trial for detecting the protein-pToteim interaction in rnore physiological condition as well.  ... 
doi:10.2142/biophys.46.s122_2 fatcat:fn3k2k6wh5bpheeomlpvjkqyhm

S1d1-7 DNA and Estrogen Receptor Interaction Revealed by the Fragment Molecular Orbital Method(S1-d1: "Structure and Function of Weak Interactions in Protein Molecules",Symposia,Abstract,Meeting Program of EABS & BSJ 2006)

Toshio Watanabe, Yuichi Inadomi, Kaori Fukuzawa, Shigenori Tanaka, Tatsuya Nakano, Lennart Nilsson, Umpei Nagashima
2006 Seibutsu Butsuri  
In view of the high conservation of eaveolin prirmary sequence in evolution, wc investigatcd whcthc: the relc of cavcolins in cavcolae formation was similarly eonscrvcd, C. clcgans eavco]in is cfficiently  ...  into tho relc of caveolin in evolution.  ...  In view of the high conservation of eaveolin prirmary sequence in evolution, Hancecki, Rubert G, Parton!  ... 
doi:10.2142/biophys.46.s108_1 fatcat:a7wtw6rac5dmbi47edwjnak3ki

1P406 Role of SynCAM in the interaction between dorsal root ganglia and mast cells(16. Cell-cell communication,Poster Session,Abstract,Meeting Program of EABS &BSJ 2006)

Keisuke Okamoto, Tadahide Furano, Naohide Hirashima, Mamoru Nakanishi
2006 Seibutsu Butsuri  
(DRe}, TherefoTe. we studied hcre the rote of SgTGSF/SynCAM in thc interaction between DRG and mast cells.  ...  Erom superior cervieal ganglion (SCG) neurons to mast cells, Recently we have demonstrated that an adhesion motecule SglGSFiSyllCAM on mast cells played an impertant role in the interaction betwee] SCG  ...  (DRe}, TherefoTe. we studied hcre the rote of SgTGSF/SynCAM in thc interaction between DRG and mast cells.  ... 
doi:10.2142/biophys.46.s248_2 fatcat:senxpvizc5erdgmltk3vbx3nom

2P433 Modeling the emergence of cliques in the protein interaction networks(48. Bioinformatics, genomics and proteomics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Takeshi Hase, Yoshihito Niimura, Soichi Ogishima, Tuguchika Kaminuma, Hiroshi Tanaka
2006 Seibutsu Butsuri  
Tbkyo Inst. of Tech., 2GSIC, Tokyo Inst, or Tech, Protein-pTotein interactions are csscntial for ma]iy bielogical processes.  ...  We cottected and analyscd S2 SCOP famities each of that contains proteins whieh are different in oligomeric states with at Eeast one of thc other members in the sarne family.  ...  In the yeast PIN CMIPS [2]), vv'e found 346 second-neighbor connections and 74 cross- interactions.  ... 
doi:10.2142/biophys.46.s404_1 fatcat:gjm5gksjwndqtmz6bf2fvtszgi

1P489 Mathematical modeling of gene interactions associated with Wnt signaling pathway in colorectal carcinoma(24. Mathematical biology,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Yoshimi Naruo, Kaoru Mogushi, Yoh Iwasa, Hiroshi Tanaka
2006 Seibutsu Butsuri  
Failures of such control give rise to progressively is Lhe existence ef a critical cell size in spite uf randem variutions of birth cetl size, FurthcmLore this critica] cell size is not rigidly programmed  ...  In thi$ study, a formulatien fur physiologicalty relevant models ispresented.Mcthod: Dynamical mcan-t'tcld approximation is uscd to cvatuate the lnfiuencc of IP489Mathematical modeling of gene interactions  ... 
doi:10.2142/biophys.46.s269_1 fatcat:qx6g5vf3erbh3jnauv2au3s33y

1P062 Aromatic Ring Stacking Interaction in a Blue Copper Protein, Pseudoazurin(2. Protein function (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Takayuki Higuchi, Rehab F. Abdelhamid, Yoshiko Uchida, Yuji Obara, Takamitsu Kohzuma
2006 Seibutsu Butsuri  
In the structure ef Ithz, the solvcnt cxposed His81 seem3 to interact wjth the side ehain greup of Met16 within a van def Wtials radlus.  ...  In thc strueture of RAz, the so]vent exposed His81 interacts with the side chain of Mcti6.The Met16 residuc was' substituted by Tyr and Phe, and the protein vuriants were expressed in E. ooli and purified  ...  In the structure ef Ithz, the solvcnt cxposed His81 seem3 to interact wjth the side ehain greup of Met16 within a van def Wtials radlus.  ... 
doi:10.2142/biophys.46.s162_2 fatcat:fyh553k7xjatxakeqiuzlmtwxq
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