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InterPro: the integrative protein signature database

S. Hunter, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bork, U. Das, L. Daugherty, L. Duquenne, R. D. Finn, J. Gough (+26 others)
<span title="2009-01-01">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
NEW FEATURES IN InterPro Annotation InterPro curators continue to integrate new signatures from member databases into entries.  ...  Table 1 . 1 Coverage of the major sequence databases UniProtKB, UniParc and UniMES by InterPro signatures The number of proteins matching signatures from InterPro and those matching the full set of member  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkn785">doi:10.1093/nar/gkn785</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18940856">pmid:18940856</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2686546/">pmcid:PMC2686546</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6ehhtr3amzazll5wha5itvjzba">fatcat:6ehhtr3amzazll5wha5itvjzba</a> </span>
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The InterPro BioMart: federated query and web service access to the InterPro Resource

P. Jones, D. Binns, C. McMenamin, C. McAnulla, S. Hunter
<span title="2011-07-23">2011</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ejkvir3kzbdojf5kygupkidsca" style="color: black;">Database: The Journal of Biological Databases and Curation</a> </i> &nbsp;
Acknowledgements The authors would particularly like to acknowledge the continuing support of the InterPro Consortium member databases and the support of the BioMart development team who have given invaluable  ...  guidance and assistance with constructing the InterPro BioMart.  ...  The InterPro team at the EBI integrates the predictive signatures from these member databases into 'InterPro Entries'.  ... 
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New developments in the InterPro database

N. J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bork, V. Buillard, L. Cerutti, R. Copley, E. Courcelle, U. Das (+33 others)
<span title="2007-01-03">2007</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF,  ...  The latter two new member databases have been integrated since the last publication in this journal.  ...  InterPro is funded in part by the MRC e-family grant number G0100305. A large proportion of HMMERbased calculations are performed on the IBMP690 Supercomputer at HLRN.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkl841">doi:10.1093/nar/gkl841</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17202162">pmid:17202162</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1899100/">pmcid:PMC1899100</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ditkwsqd5zctdb5wgxs36xhmum">fatcat:ditkwsqd5zctdb5wgxs36xhmum</a> </span>
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InterPro, progress and status in 2005

N. J. Mulder
<span title="2004-12-17">2004</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
InterPro, an integrated documentation resource of protein families, domains and functional sites, was created to integrate the major protein signature databases.  ...  PIRSF and the structure-based SUPERFAMILY are the latest member databases to join InterPro, and CATH and PANTHER are soon to be integrated.  ...  ACKNOWLEDGEMENTS The InterPro project is supported by the ProFuSe grant (number QLG2-CT-2000-00517) and the Integr8 grant (number QLRI-CT-2001000015) of the European Commission.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gki106">doi:10.1093/nar/gki106</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15608177">pmid:15608177</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC540060/">pmcid:PMC540060</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ykhpocbakfck3elxzhjb7z34rm">fatcat:ykhpocbakfck3elxzhjb7z34rm</a> </span>
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Website Review: InterPro (The Integrated Resource of Protein Domains and Functional Sites). http://www.ebi.ac.uk/interpro/

Christopher Southan
<span title="">2000</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/tzd3zfaccfaajaufr6qufuowey" style="color: black;">Yeast</a> </i> &nbsp;
The family and motif databases, PROSITE, PRINTS, Pfam and ProDom, have been integrated into a powerful resource for protein secondary annotation.  ...  As of June 2000, InterPro had processed 384 572 proteins in SWISS-PROT and TrEMBL.  ...  Other members of the project team are listed on the website at http://www.ebi.ac.uk/interpro/release_notes.html. Source databases  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/1097-0061(200012)17:4&lt;327::aid-yea45&gt;3.3.co;2-b">doi:10.1002/1097-0061(200012)17:4&lt;327::aid-yea45&gt;3.3.co;2-b</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11119311">pmid:11119311</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2448387/">pmcid:PMC2448387</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/37anj5oo5ra65lnckr6vvsmvye">fatcat:37anj5oo5ra65lnckr6vvsmvye</a> </span>
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HMM-based databases in InterPro

A. Bateman
<span title="2002-01-01">2002</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/op7ztx4fhvairowgqifu7dnvsi" style="color: black;">Briefings in Bioinformatics</a> </i> &nbsp;
Protein family databases are an important resource for protein annotation and understanding protein evolution and function.  ...  This paper reviews the Pfam, TIGRFAMs and SMART databases that use the profile-HMMs provided by the HMMER package.  ...  Through the mechanism of InterPro 22 the results from searches of these different resources can be easily integrated allowing a comprehensive view of protein architecture and function.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/3.3.236">doi:10.1093/bib/3.3.236</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12230032">pmid:12230032</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ykxhgzgngrbblmc3zbwdrpsf7q">fatcat:ykxhgzgngrbblmc3zbwdrpsf7q</a> </span>
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InterPro Curation: Integrating Predictive Protein Signatures Into Biological Hierarchies

Sarah Burge, Sarah Burge
<span title="2010-11-30">2010</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gfizkffjyzhple2sfhgk46dk2e" style="color: black;">Nature Precedings</a> </i> &nbsp;
Member databases build sequence-based models to represent biological features such as families, domains, conserved sites We integrate them (without alteration) into the InterPro database and provide  ...  InterPro is a collection of predictive protein signatures Our member databases all have their particular niche or focus... ...but InterPro is a combination of all their areas of expertise!  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2010.5330.1">doi:10.1038/npre.2010.5330.1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pu5wookyuzgrnifegtengfzwue">fatcat:pu5wookyuzgrnifegtengfzwue</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170810043345/http://precedings.nature.com/documents/5330/version/1/files/npre20105330-1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0e/a3/0ea3cfb3eef16eeddfb94d9a55245f08d9b31dc5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2010.5330.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

InterPro Curation: Integrating Predictive Protein Signatures Into Biological Hierarchies

Sarah Burge, Sarah Burge
<span title="2010-11-30">2010</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gfizkffjyzhple2sfhgk46dk2e" style="color: black;">Nature Precedings</a> </i> &nbsp;
Member databases build sequence-based models to represent biological features such as families, domains, conserved sites We integrate them (without alteration) into the InterPro database and provide  ...  InterPro is a collection of predictive protein signatures Our member databases all have their particular niche or focus... ...but InterPro is a combination of all their areas of expertise!  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2010.5330">doi:10.1038/npre.2010.5330</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/uorkwig2tfbkdlkzawqpranmey">fatcat:uorkwig2tfbkdlkzawqpranmey</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170810043345/http://precedings.nature.com/documents/5330/version/1/files/npre20105330-1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0e/a3/0ea3cfb3eef16eeddfb94d9a55245f08d9b31dc5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/npre.2010.5330"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

R. Apweiler
<span title="2001-01-01">2001</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
InterPro is an integrated documentation resource for protein families, domains and functional sites, which amalgamates the efforts of the PROSITE, PRINTS, Pfam and ProDom database projects.  ...  Signature databases are vital tools for identifying distant relationships in novel sequences and hence for inferring protein function.  ...  ACKNOWLEDGEMENTS The InterPro project is supported by grant number BIO4-CT98-0052 of the European Commission. T.K.A. is a Royal Society University Research Fellow.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/29.1.37">doi:10.1093/nar/29.1.37</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11125043">pmid:11125043</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC29841/">pmcid:PMC29841</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ft4lb3l2zjhnph2ll42i3jnz3e">fatcat:ft4lb3l2zjhnph2ll42i3jnz3e</a> </span>
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InterPro in 2017—beyond protein family and domain annotations

Robert D. Finn, Teresa K. Attwood, Patricia C. Babbitt, Alex Bateman, Peer Bork, Alan J. Bridge, Hsin-Yu Chang, Zsuzsanna Dosztányi, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft (+35 others)
<span title="2016-11-29">2016</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
InterPro (http://www.ebi.ac.uk/interpro/) is a freely available database used to classify protein sequences into families and to predict the presence of important domains and sites.  ...  Here, we report recent developments with InterPro and its associated software, in-cluding the addition of two new databases (SFLD and CDD), and the functionality to include residue-level annotation and  ...  Until integrated, the annotations from these databases are provided at the bottom of each protein page, in the 'Detailed signature matches', under the 'unintegrated signatures' listing.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkw1107">doi:10.1093/nar/gkw1107</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27899635">pmid:27899635</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5210578/">pmcid:PMC5210578</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/wa7z5pgpuffnrh5bf5ycimw7kq">fatcat:wa7z5pgpuffnrh5bf5ycimw7kq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190501233042/http://udspace.udel.edu/bitstream/handle/19716/21353/InterPro%20in%202017%20beyond%20protein%20family%20and%20domain%20annotations_1492792560T0699.pdf;jsessionid=B665127B9705876C279C9E8BC8E6E152?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/02/32/023201ee6bb05e9d602d56ac5620db60849af1a4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkw1107"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210578" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The InterPro Database, 2003 brings increased coverage and new features

N. J. Mulder
<span title="2003-01-01">2003</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
InterPro, an integrated documentation resource of protein families, domains and functional sites, was created in 1999 as a means of amalgamating the major protein signature databases into one comprehensive  ...  This integration will enhance the capability of the database in the field of protein classification and characterisation and make the database, a true integrated resource for complete protein sequence  ...  In 1999, the major signature databases PROSITE (1), PRINTS (2), Pfam (3) and ProDom (4) formed a Consortium and agreed to integrate their data into a new database that became known as InterPro (5) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkg046">doi:10.1093/nar/gkg046</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12520011">pmid:12520011</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC165493/">pmcid:PMC165493</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fy5hcc4yxvgtpgniyqtsnwmqvm">fatcat:fy5hcc4yxvgtpgniyqtsnwmqvm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808054855/http://cegg.unige.ch/system/files/315.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f0/ef/f0ef01f4dcd07b84387a39eee9548d184109e155.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkg046"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC165493" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The InterPro protein families and domains database: 20 years on

Matthias Blum, Hsin-Yu Chang, Sara Chuguransky, Tiago Grego, Swaathi Kandasaamy, Alex Mitchell, Gift Nuka, Typhaine Paysan-Lafosse, Matloob Qureshi, Shriya Raj, Lorna Richardson, Gustavo A Salazar (+21 others)
<span title="2020-11-06">2020</span> <i title="Oxford University Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites.  ...  Signatures are predictive models which describe protein families, domains or sites, and are provided by multiple databases.  ...  ACKNOWLEDGEMENTS The authors would like to thank former members of the InterPro team: Sara El-Gebali, Matthew Fraser, Aurélien Luciani, Sebastien Pesseat, Simon Potter, Neil Rawlings, Amaia Sangrador-Vegas  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkaa977">doi:10.1093/nar/gkaa977</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33156333">pmid:33156333</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7778928/">pmcid:PMC7778928</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vfs7k3dxr5bcpbpvxbptj6r46m">fatcat:vfs7k3dxr5bcpbpvxbptj6r46m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210427095413/https://discovery.ucl.ac.uk/id/eprint/10115192/1/gkaa977.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b7/47/b74764d7ba701d38149f71242600058a111ef1b7.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkaa977"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778928" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

InterPro: An integrated documentation resource for protein families, domains and functional sites

<span title="2002-01-01">2002</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/op7ztx4fhvairowgqifu7dnvsi" style="color: black;">Briefings in Bioinformatics</a> </i> &nbsp;
The member databases -PRINTS, PROSITE, Pfam, ProDom, SMART and TIGRFAMs -form the InterPro core. Related signatures from each member database are unified into single InterPro entries.  ...  In recognition of this, InterPro was developed as an integrated documentation resource for protein families, domains and functional sites, to rationalise the complementary efforts of the individual protein  ...  Acknowledgements The InterPro project is supported by the ProFuSe grant (number QLG2-CT-2000-00517) of the European Commission.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/3.3.225">doi:10.1093/bib/3.3.225</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12230031">pmid:12230031</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2igbmarmcjbpfphuwf6l7ny4cy">fatcat:2igbmarmcjbpfphuwf6l7ny4cy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20151004143258/http://www.letunic.com/publications/12230031.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b6/3a/b63a39f7994e276e872b82edf8ba58a5356577bd.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/3.3.225"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

InterProScan - an integration platform for the signature-recognition methods in InterPro

E. M. Zdobnov, R. Apweiler
<span title="2001-09-01">2001</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wmo54ba2jnemdingjj4fl3736a" style="color: black;">Bioinformatics</a> </i> &nbsp;
InterProScan is a tool that scans given protein sequences against the protein signatures of the InterPro member databases, currently -PROSITE, PRINTS, Pfam, ProDom and SMART.  ...  The number of signature databases and their associated scanning tools as well as the further refinement procedures make the problem complex.  ...  ACKNOWLEDGEMENTS We would like to thank Rodrigo Lopez for general support and the mailserver backend as well as Thure Etzold and Henning Hermjakob for useful discussions and ideas.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/17.9.847">doi:10.1093/bioinformatics/17.9.847</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11590104">pmid:11590104</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/d7qfi3q2nvhonbjwmij4j5nxey">fatcat:d7qfi3q2nvhonbjwmij4j5nxey</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170715115244/https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/bioinformatics/17/9/10.1093/bioinformatics/17.9.847/2/170847.pdf?Expires=1500213118&amp;Signature=L0Hrt1ub1QjvRq0fKvsU1ekDie41aemaFRP6ZvpA9VTYPHjDgPX9sW6RevBQAW0qghK8N5Edn0Fjbi9CM6h3vYhhQQD4n8n-e6Yaw2ihqLe1eQvD7mlAKtPsnhMkMAVRxxAbAF~UCvJqZ0UYSkpP281agNC4jMTwet-kPfnQ3afKBlNKxBWP~nDKERW9b8RGl2ySr4K1SwNjggMIeFU9jBOKCkYo12K9AYexn2-ip7koA0U-Y~C7bxMc5YzbMe~51QZitBEEZNX8uFHSOojxZCVBXYvX41wd~vdIQ7KH2BfrR5XH-YkB~g5qZdXCKupPAyCV5mbAMeS35V2dyq5JCQ__&amp;Key-Pair-Id=APKAIUCZBIA4LVPAVW3Q" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ff/bb/ffbb338ca39673852ef73e14a9f8512a3d18c4ac.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/17.9.847"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

Applications of InterPro in protein annotation and genome analysis

M. Biswas
<span title="2002-01-01">2002</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/op7ztx4fhvairowgqifu7dnvsi" style="color: black;">Briefings in Bioinformatics</a> </i> &nbsp;
InterPro 1 combines many of the commonly used protein signature databases as an integrated resource.  ...  . • The highly diagnostic protein family signature database InterPro supplies the means to assign proteins to groups.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/3.3.285">doi:10.1093/bib/3.3.285</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12230037">pmid:12230037</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3p33ikuxqbdenlf6yd6tok3aaa">fatcat:3p33ikuxqbdenlf6yd6tok3aaa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180728064734/https://watermark.silverchair.com/285.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAZgwggGUBgkqhkiG9w0BBwagggGFMIIBgQIBADCCAXoGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMmZscdHmUfGVjaHoeAgEQgIIBS6p1kUYe7jdGk4foaMWldub8jDWwkaHOqNGVqRdJwnKyEuUmlZOqcfakALssslfy5KjcZR18P9cY71NsrtmExjaESExIIRPr_WvhWsF2MZJLxCo9FZk2CeFMWALBhD4JQ0oJ0_IL3KRVNNG8_e9uC-_3H5_2nLmt6PK2cWuxGRPnXKRoloMUd60ArfMJQMPfjI8RmD2AUmXPIzFrvzrk9KDj4KBg33pA1A4Wmu_WX9qFRNs4ipt4XHrcgs0Wkf2DksDFfuWT1ZiUP7dkcIEAnZUAbTPAVDJkf_boIiy5oUK8_k1NH-gOGAQT4r-Gu4ns7K_DAIzRCcfjxM96jRIO5tJKsi87ChCLRcemwO1XzOokvU8_YZgG7dGwWbLDMKV8V1P45Feh7FkVvP2yExs-tvAe4SUqDyO9WlIPENYaJAjUAhVqj0YzhUVmuTM" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/65/8d/658db5367ad9ad308ec8ec97c0eb03b34db9c08f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/3.3.285"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>
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