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Inter-subject alignment of human cortical anatomy using functional connectivity

Bryan R. Conroy, Benjamin D. Singer, J. Swaroop Guntupalli, Peter J. Ramadge, James V. Haxby
<span title="">2013</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
We propose a new inter-subject registration algorithm that aligns intra-subject patterns of functional connectivity across subjects.  ...  Inter-subject alignment of functional MRI (fMRI) data is necessary for group analyses.  ...  Acknowledgment This work was funded by grants from the National Institute of Mental Health (5R01MH075706-02) and the National Science Foundation (NSF-1129764 and NSF-1129855).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2013.05.009">doi:10.1016/j.neuroimage.2013.05.009</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23685161">pmid:23685161</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3729877/">pmcid:PMC3729877</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/y3nkzcswnbfn5aqwb64jz7k2fa">fatcat:y3nkzcswnbfn5aqwb64jz7k2fa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20140629031214/http://haxbylab.dartmouth.edu:80/publications/CSG+13.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e8/42/e84213a6dc0a2db3d8a987b286e8a3a4b6a6a63b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2013.05.009"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3729877" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Diffeomorphic functional brain surface alignment: Functional demons

Karl-Heinz Nenning, Hesheng Liu, Satrajit S. Ghosh, Mert R. Sabuncu, Ernst Schwartz, Georg Langs
<span title="">2017</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
Typically, registration approaches assume a strong association between the features used for alignment, such as macro-anatomy, and the variable observed, such as functional activation or connectivity.  ...  We mapped functional connectivity relationships within the brain into an embedding space, and aligned the resulting maps of multiple subjects.  ...  Z161100002616009, and by the Medical Imaging Cluster at Medical University of Vienna.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2017.04.028">doi:10.1016/j.neuroimage.2017.04.028</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28416451">pmid:28416451</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5548603/">pmcid:PMC5548603</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4clxotztqfcsjggt3cwi7t2mza">fatcat:4clxotztqfcsjggt3cwi7t2mza</a> </span>
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Inter-species cortical registration between macaques and humans using a functional network property under a spherical demons framework

Haewon Nam, Chongwon Pae, Jinseok Eo, Maeng-Keun Oh, Hae-Jeong Park, Pew-Thian Yap
<span title="2021-10-21">2021</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
We also evaluated the interhemispheric asymmetry of regional area and its inter-subject variability in humans and macaques as an indirect validation of the proposed method.  ...  The functional connectivity matrix of resting-state functional magnetic resonance imaging (rs-fMRI) among cortical parcellations was iteratively calculated for humans and macaques.  ...  Robinson, Jbabdi [24] combined functional connectivity properties with other multimodal features such as myelin map or discrete areal delineation to determine inter-subject homology using human cortices  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0258992">doi:10.1371/journal.pone.0258992</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/34673832">pmid:34673832</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8530290/">pmcid:PMC8530290</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zwdzcgf7crgppdvtnlhf2k3zai">fatcat:zwdzcgf7crgppdvtnlhf2k3zai</a> </span>
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Brain without Anatomy: Construction and Comparison of Fully Network-Driven Structural MRI Connectomes

Olga Tymofiyeva, Etay Ziv, A. James Barkovich, Christopher P. Hess, Duan Xu, Satoru Hayasaka
<span title="2014-05-01">2014</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
substantial differences in cortical anatomy.  ...  Second, to enable a connection-wise comparison, alignment to a "reference brain" was performed in the network domain within each group using a matrix alignment algorithm with simulated annealing.  ...  de Santiago for the coordination of the study, and Donna M.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0096196">doi:10.1371/journal.pone.0096196</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24789312">pmid:24789312</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4006896/">pmcid:PMC4006896</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/atbzifziffemfi2pktycvftxzy">fatcat:atbzifziffemfi2pktycvftxzy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190502235325/https://cloudfront.escholarship.org/dist/prd/content/qt94b4f5k0/qt94b4f5k0.pdf?t=nnjtuu" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/76/e2/76e24cabc07b4f3ea781a711ef44c324a83a5715.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0096196"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006896" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Parcellating cortical functional networks in individuals

Danhong Wang, Randy L Buckner, Michael D Fox, Daphne J Holt, Avram J Holmes, Sophia Stoecklein, Georg Langs, Ruiqi Pan, Tianyi Qian, Kuncheng Li, Justin T Baker, Steven M Stufflebeam (+4 others)
<span title="2015-11-09">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lnbpt3q37zbs5nc5hp4wlttdwy" style="color: black;">Nature Neuroscience</a> </i> &nbsp;
Thus, inter-subject variability observed in functional connectivity patterns can also be confounded by variations in vascular anatomy.  ...  Obtaining functional atlases at the level of the individual person is a critical step towards understanding the anatomy-function association in the human brain and the stability of this relationship across  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nn.4164">doi:10.1038/nn.4164</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26551545">pmid:26551545</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4661084/">pmcid:PMC4661084</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pktkdtzigvfn7fnn2gdvyhyuxq">fatcat:pktkdtzigvfn7fnn2gdvyhyuxq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180725132815/https://dash.harvard.edu/bitstream/handle/1/27320377/4661084.pdf?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ab/03/ab03b5676e75f54c109cb10f1cb8117e204b0af0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nn.4164"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4661084" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

A computational model of shared fine-scale structure in the human connectome [article]

J. Swaroop Guntupalli, Ma Feilong, James V. Haxby
<span title="2017-02-15">2017</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Variation in cortical connectivity profiles is typically modeled as having a coarse spatial scale parcellated into interconnected brain areas.  ...  We created a high-dimensional common model of the human connectome to search for fine-scale structure that is shared across brains.  ...  anatomically-aligned data. bsMVPC of movie time segments relies on fine-scale structure that is not well-aligned based on anatomy, nor on functional alignment using a "rubber-sheet" warping of cortical  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/108738">doi:10.1101/108738</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lbfp7wcctnbttfsy4hfcfslxfi">fatcat:lbfp7wcctnbttfsy4hfcfslxfi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190429145619/https://www.biorxiv.org/content/biorxiv/early/2018/04/01/108738.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/31/80/3180ff4dace667d0cb9aa5d7523dddd3dbab88bc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/108738"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

A computational model of shared fine-scale structure in the human connectome

J. Swaroop Guntupalli, Ma Feilong, James V. Haxby, Tal Yarkoni
<span title="2018-04-17">2018</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ch57atmlprauhhbqdf7x4ytejm" style="color: black;">PLoS Computational Biology</a> </i> &nbsp;
Variation in cortical connectivity profiles is typically modeled as having a coarse spatial scale parcellated into interconnected brain areas.  ...  We developed a high-dimensional model common model of the human connectome that captures both coarse and fine-scale structure of connectivity shared across brains.  ...  This work was supported by grants from the National Institute of Mental Health (R01MH075706) and the National Science Foundation (NSF1129764 and  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pcbi.1006120">doi:10.1371/journal.pcbi.1006120</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29664910">pmid:29664910</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5922579/">pmcid:PMC5922579</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/i5ycaat4hzajbivws6rmxv5t2u">fatcat:i5ycaat4hzajbivws6rmxv5t2u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180723143602/https://www.biorxiv.org/content/biorxiv/early/2017/04/24/108738.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9c/96/9c96eebd22953a596883e8d03899ec4d0e5a8985.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pcbi.1006120"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5922579" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Identifying Shared Brain Networks in Individuals by Decoupling Functional and Anatomical Variability

Georg Langs, Danhong Wang, Polina Golland, Sophia Mueller, Ruiqi Pan, Mert R. Sabuncu, Wei Sun, Kuncheng Li, Hesheng Liu
<span title="2015-09-01">2015</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/eeg67t2wzfd3dpiicxsttg3cxi" style="color: black;">Cerebral Cortex</a> </i> &nbsp;
The connectivity architecture of the human brain varies across individuals.  ...  for individual variability in the cortical distribution of functional units.  ...  Functional Alignment across Subjects We performed intersubject alignment in the embedding space where the functional connectivity patterns of each subject had been mapped.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/cercor/bhv189">doi:10.1093/cercor/bhv189</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26334050">pmid:26334050</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5027997/">pmcid:PMC5027997</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/q7r3o2ndbbadxk26nxvw7puh3e">fatcat:q7r3o2ndbbadxk26nxvw7puh3e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190223122346/http://pdfs.semanticscholar.org/44f1/d57e540650f9a0820a556082c6a1834ab8ec.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/44/f1/44f1d57e540650f9a0820a556082c6a1834ab8ec.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/cercor/bhv189"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5027997" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Normative Brain Size Variation and the Remodeling of Brain Shape in Humans [article]

Paul K. Reardon, Simon N. Vandekar, Siyuan Liu, Raihaan Patel, Min Tae M. Park, Aaron Alexander-Bloch, Jakob Seidlitz, Liv S. Clasen, Jonathan D. Blumenthal, Jay N. Giedd, Ruben C. Gur, Raquel E. Gur (+5 others)
<span title="2017-10-19">2017</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Our results define a new organizing principle in human brain patterning which governs the highly-coordinated remodeling of human brain shape as a function of naturally-occurring variations in brain size  ...  Using in vivo neuroimaging data from 2 independent cohorts totaling nearly 3000 individuals, we find that larger-brained humans show preferential areal expansion within specific fronto-parietal cortical  ...  ACKNOWLEDGMENTS This article is a US Government work.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/205930">doi:10.1101/205930</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5s5xfd6jm5aqpars7plqiktlca">fatcat:5s5xfd6jm5aqpars7plqiktlca</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190502075101/https://www.biorxiv.org/content/biorxiv/early/2017/10/19/205930.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a6/73/a673f427c55d8d21ca261ffe4b9038a25b55ac20.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/205930"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Functional Alignment with Anatomical Networks is Associated with Cognitive Flexibility [article]

John D. Medaglia, Weiyu Huang, Elisabeth A. Karuza, Sharon L. Thompson-Schill, Alejandro Ribeiro, Danielle S. Bassett
<span title="2016-11-26">2016</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
We found that the alignment between functional signals and the architecture of the underlying white matter network was associated with greater cognitive flexibility across subjects.  ...  Cognitive flexibility describes the human ability to switch between modes of mental function to achieve goals.  ...  The observed inter-task consistency of functional signal alignment and liberality was complemented by broad inter-subject variability.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1611.08751v1">arXiv:1611.08751v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/s5x4fpkfmzhbpgeyfq5qypqxpi">fatcat:s5x4fpkfmzhbpgeyfq5qypqxpi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200825034910/https://arxiv.org/pdf/1611.08751v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e4/3c/e43c995e1caf9e308bcf1033fb47536da21d745d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1611.08751v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Individual variability in functional organization of the human and monkey auditory cortex [article]

Jianxun Ren, Hesheng Liu, Ting Xu, Franziska Schoeppe, Danhong Wang, Meiling Li, Yunxiang Lin, Julian Ramirez, Jie Lu, Luming Li, Jyrki Ahveninen
<span title="2020-01-07">2020</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Here, we examined the variability of ACs using intrinsic functional connectivity patterns in humans and macaques.  ...  The quantitative proof of the exceptional variability of ACs has implications for understanding the evolution of advanced auditory functions in humans.  ...  Inter-subject variability of 131 functional connectivity was quantified at each vertex based on the dissimilarity of the seed-based 132 connectivity maps between subjects, using the strategy described  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.01.06.895474">doi:10.1101/2020.01.06.895474</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/46sm2t3db5f3tjilu3ylmbhdiu">fatcat:46sm2t3db5f3tjilu3ylmbhdiu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200212112621/https://www.biorxiv.org/content/biorxiv/early/2020/01/07/2020.01.06.895474.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.01.06.895474"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Hyperalignment: Modeling shared information encoded in idiosyncratic cortical topographies

James V Haxby, J Swaroop Guntupalli, Samuel A Nastase, Ma Feilong
<span title="2020-06-02">2020</span> <i title="eLife Sciences Publications, Ltd"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/en4qj5ijrbf5djxx7p5zzpjyoq" style="color: black;">eLife</a> </i> &nbsp;
, and discuss implications for understanding the structure of cortical functional architecture.  ...  , and model cortical topography as mixtures of overlapping, individual-specific topographic basis functions, rather than as contiguous functional areas.  ...  sheet to enhance the inter-subject similarity of representational geometry in a cortical field.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7554/elife.56601">doi:10.7554/elife.56601</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32484439">pmid:32484439</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dbikkgynz5fx3hpxyjdmal5bn4">fatcat:dbikkgynz5fx3hpxyjdmal5bn4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200603025532/https://elifesciences.org/download/aHR0cHM6Ly9jZG4uZWxpZmVzY2llbmNlcy5vcmcvYXJ0aWNsZXMvNTY2MDEvZWxpZmUtNTY2MDEtdjEucGRm/elife-56601-v1.pdf?_hash=eRavg0NbfT8wkAfuGgxgOS%2B%2BIgkN9tMaQT4fmBA7%2Fis%3D" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7554/elife.56601"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elifesciences.com </button> </a>

Improved tractography alignment using combined volumetric and surface registration

Lilla Zöllei, Allison Stevens, Kristen Huber, Sita Kakunoori, Bruce Fischl
<span title="">2010</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
In this paper we show that using CVS to compute cross-subject alignment from anatomical images, then applying the previously computed alignment to diffusion weighted MRI images, outperforms state-of-the-art  ...  In addition, we compare linear alignment using FLIRT based on either fractional anisotropy or anatomical volumes across-subjects, and find a comparable effect.  ...  NAMIC, funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2010.01.101">doi:10.1016/j.neuroimage.2010.01.101</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/20153833">pmid:20153833</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2847021/">pmcid:PMC2847021</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4kezark5jjfm7ldh6kcpwuzd6a">fatcat:4kezark5jjfm7ldh6kcpwuzd6a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809002805/https://surfer.nmr.mgh.harvard.edu/ftp/articles/2010/2010_-_Zollei_et_al._-_NeuroImage.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/7a/4e/7a4edeb60aef9378e47743d433086a22933909b7.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2010.01.101"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2847021" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Constructing a representational atlas for human cerebral cortex

Samuel A. Nastase
<span title="2016-11-28">2016</span> <i title="Zenodo"> Zenodo </i> &nbsp;
These approaches use either time-locked responses to dynamic, naturalistic stimuli or inter-voxel correlations to register neural representational spaces.  ...  A representational atlas characterizes cortical fields in terms of what information they explicitly encode—i.e., their representational geometry.  ...  Connectivity-based hyperalignment better aligns connectivity patterns than anatomical alignment and retains fine-scaled topography.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.4016446">doi:10.5281/zenodo.4016446</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lezjuzzqpzawlevvgn2x4vcyp4">fatcat:lezjuzzqpzawlevvgn2x4vcyp4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200916124014/https://zenodo.org/record/4016446/files/neurocog_hyperalignment_2016-11-28.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.4016446"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> zenodo.org </button> </a>

Locally-Optimized Inter-Subject Alignment of Functional Cortical Regions [article]

Marius Cătălin Iordan, Armand Joulin, Diane M. Beck, Li Fei-Fei
<span title="2016-06-07">2016</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Inter-subject registration of cortical areas is necessary in functional imaging (fMRI) studies for making inferences about equivalent brain function across a population.  ...  Our method outperforms the two most commonly used alternatives (anatomical landmark-based AFNI alignment and cortical convexity-based FreeSurfer alignment) in overlap between predicted region and functionally-defined  ...  Thus, our goal is to increase the reliability of inter-subject mapping for these cortical functional peaks, as well as for the visual areas they define, using fMRI data.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1606.02349v1">arXiv:1606.02349v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3nhynfvagne5rfdgoa5gg2no3u">fatcat:3nhynfvagne5rfdgoa5gg2no3u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191012083037/https://arxiv.org/pdf/1606.02349v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/2a/3e/2a3e652342ee77ad95d08d10edb0f92d3e5e4225.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1606.02349v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>
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