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Integration of Metabolic and Quorum Sensing Signals Governing the Decision to Cooperate in a Bacterial Social Trait

Kerry E. Boyle, Hilary Monaco, Dave van Ditmarsch, Maxime Deforet, Joao B. Xavier, Jennifer L. Reed
<span title="2015-06-23">2015</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ch57atmlprauhhbqdf7x4ytejm" style="color: black;">PLoS Computational Biology</a> </i> &nbsp;
We combine mathematical modeling and experiments to quantitatively characterize the integration of metabolic and population density signals (quorum sensing) governing expression of the rhamnolipid synthesis  ...  Our quantitative analysis suggests a supplydriven activation that integrates metabolic prudence with quorum sensing in a non-digital manner and allows P. aeruginosa cells to invest in cooperation only  ...  Acknowledgments We thank Kevin Foster and Karina Xavier for comments and helpful discussions. Integration of Metabolic and Quorum Sensing in Bacterial Cooperation  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pcbi.1004279">doi:10.1371/journal.pcbi.1004279</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26102206">pmid:26102206</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4477906/">pmcid:PMC4477906</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/hcwjjvn2wrajhin4rdkaubzcj4">fatcat:hcwjjvn2wrajhin4rdkaubzcj4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170925101502/http://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004279&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/29/8c/298c793c4dd7bb5a85795b76d3fca3fa8959deba.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pcbi.1004279"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477906" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Collective sensing and collective responses in quorum-sensing bacteria

R. Popat, D. M. Cornforth, L. McNally, S. P. Brown
<span title="2014-12-10">2014</span> <i title="The Royal Society"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kdv34qlmv5gsfphm6vnme655ia" style="color: black;">Journal of the Royal Society Interface</a> </i> &nbsp;
In this review, we discuss how bacteria sense and overcome environmental challenges as a group using collective mechanisms of sensing, known as 'quorum sensing' (QS).  ...  Bacteria often face fluctuating environments, and in response many species have evolved complex decision-making mechanisms to match their behaviour to the prevailing conditions.  ...  For instance, the classic bacterial decision-making mechanism, the lac operon, controls whether Escherichia coli cells invest in the metabolism of lactose, as a function of its availability in the environment  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1098/rsif.2014.0882">doi:10.1098/rsif.2014.0882</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25505130">pmid:25505130</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4305403/">pmcid:PMC4305403</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ubbxhqn7mzgrraccsss46ttg7u">fatcat:ubbxhqn7mzgrraccsss46ttg7u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190225210912/http://pdfs.semanticscholar.org/7462/0c3ec142673ab9e6a62450fd387535b8cd61.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/74/62/74620c3ec142673ab9e6a62450fd387535b8cd61.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1098/rsif.2014.0882"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4305403" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Adaptive significance of quorum sensing-dependent regulation of public goods by integration of growth rate: a trade-off between survival and efficiency [article]

Arvin Nickzad, Eric Deziel
<span title="2016-03-07">2016</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Quorum sensing (QS) is a mechanism of communication used by bacteria to monitor cell density and coordinate cooperative behaviors.  ...  An emerging framework is that the adaptive significance of QS in regulation of production of costly extracellular metabolites (public goods) is to maintain the homeostasis of cooperation.  ...  Indeed, integration of metabolic information 82 into decision-making processes governing production of public goods, called 'metabolic prudence', can 83 stabilize cooperative behaviors and reduce the  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/042739">doi:10.1101/042739</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/734l4fjkcnayvjkdwrdis4wnq4">fatcat:734l4fjkcnayvjkdwrdis4wnq4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180723142633/https://www.biorxiv.org/content/biorxiv/early/2016/03/07/042739.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c4/62/c462074a2c862ebec9922bb8bf3402655e6d3a73.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/042739"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Pathogen intelligence

Michael Steinert
<span title="">2014</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6thgqfebmngxzdcx4yjgtkznqa" style="color: black;">Frontiers in Cellular and Infection Microbiology</a> </i> &nbsp;
Moreover, pathogenic populations take advantage of dormancy strategies and rapid evolutionary speed, which allow them to save co-generated intelligent traits in a collective genomic memory.  ...  This review discusses how these mechanisms add further levels of complexity to bacterial pathogenicity and transmission, and how mining for these mechanisms could help to develop new anti-infective strategies  ...  The integration of a programmed cell death response into a bacterial quorum sensing system in E. coli resulted in a stable steady state in terms of cell density.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fcimb.2014.00008">doi:10.3389/fcimb.2014.00008</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24551600">pmid:24551600</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3907765/">pmcid:PMC3907765</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/eeul5ic4gnccfoyvfkerhksnnm">fatcat:eeul5ic4gnccfoyvfkerhksnnm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171007130218/http://publisher-connector.core.ac.uk/resourcesync/data/Frontiers/pdf/b60/aHR0cDovL2pvdXJuYWwuZnJvbnRpZXJzaW4ub3JnL2FydGljbGUvMTAuMzM4OS9mY2ltYi4yMDE0LjAwMDA4L3BkZg%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/1f/64/1f64e36fccc2a77f6eda6616a63fc0083d7f00cf.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fcimb.2014.00008"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> frontiersin.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907765" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The sociobiology of biofilms

Carey D. Nadell, Joao B. Xavier, Kevin R. Foster
<span title="">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/7mlyljxtzvarvmr4qilllwug2q" style="color: black;">FEMS Microbiology Reviews</a> </i> &nbsp;
The structural and physiological complexity of biofilms has led to the idea that they are coordinated and cooperative groups, analogous to multicellular organisms.  ...  Biofilms will typically result from a balance between competition and cooperation, and we argue that understanding this balance is central to building a complete and predictive model of biofilm formation  ...  K.R.F. and J.B.X. are supported by the National Institute of General Medical Sciences Center of Excellence Grant 5P50 GM 068763-01.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1111/j.1574-6976.2008.00150.x">doi:10.1111/j.1574-6976.2008.00150.x</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19067751">pmid:19067751</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rbyaqi3hwbhgpcfqqnaqt4v3tq">fatcat:rbyaqi3hwbhgpcfqqnaqt4v3tq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20090115230049/http://www.people.fas.harvard.edu/~kfoster/Nadelletal2008%20FEMSMicroReviews.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/82/35/82359b2b02ba686631f636b65f353a56df4ebe68.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1111/j.1574-6976.2008.00150.x"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Microbe social skill: the cell-to-cell communication between microorganisms

Xi Zhao, Xiong Liu, Xin Xu, Yu V. Fu
<span title="">2017</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dn6dcjz2unefzj5uifc57sz55a" style="color: black;">Science Bulletin</a> </i> &nbsp;
Based on the communication, microbes establish a social interaction with their neighbors in a specific ecological niche, and cooperative behaviors are normally performed to provide benefits on the population  ...  In the microbiome era, in order to better understand the behaviors of microbes, deep understanding of the social communication between microbes hence becomes a key to interpret microbe behaviors.  ...  Acknowledgments This work was supported by the National Natural Science Foundation of China (31571288), CAS Interdisciplinary Innovation Team and the Newton Advanced Fellowship (NA140085) from the Royal  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.scib.2017.02.010">doi:10.1016/j.scib.2017.02.010</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ixzkpfdpd5di5mtub6byn5fbja">fatcat:ixzkpfdpd5di5mtub6byn5fbja</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210731230413/https://www.sciengine.com/doi/pdf/d40fea4fd28e48c3a9ec977b86a8a58d" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/2a/bc/2abc419e29a004a8f6b01f3c2a5f8aa1e65bb77f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.scib.2017.02.010"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

THINKING ABOUT BACTERIAL POPULATIONS AS MULTICELLULAR ORGANISMS

James A. Shapiro
<span title="">1998</span> <i title="Annual Reviews"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4phopqy4hffo7hdctdgpr7flve" style="color: black;">Annual Review of Microbiology</a> </i> &nbsp;
It has been a decade since multicellularity was proposed as a general bacterial trait.  ...  metabolic cooperation in anaerobic bioreactor granules.  ...  Bacterial populations derive adaptive benefits from multicellular cooperation and their ability to integrate the diverse activities of different cells.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1146/annurev.micro.52.1.81">doi:10.1146/annurev.micro.52.1.81</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/9891794">pmid:9891794</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/tytvljinvjdrpmgu4aertte3q4">fatcat:tytvljinvjdrpmgu4aertte3q4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809051013/http://www.webpages.uidaho.edu/newton/math501/sp05/shapiro.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/66/09/660991c6312a87ef9bdffdcb4b68076a65bb76e4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1146/annurev.micro.52.1.81"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Beyond quorum sensing: the complexities of prokaryotic parliamentary procedures

Anne K. Dunn, Eric V. Stabb
<span title="2006-09-05">2006</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/yspvheu7nrfg3hcgxvozndz22q" style="color: black;">Analytical and Bioanalytical Chemistry</a> </i> &nbsp;
Although quorum sensing was originally thought to be an isolated phenomenon governing the regulation of a handful of processes in only a few bacteria, it is now considered to be a widespread mechanism  ...  Bacterial quorum-sensing regulatory systems can be summarized in a simple model wherein an autoinducer molecule accumulates in cultures and stimulates regulatory changes in gene expression upon reaching  ...  Acknowledgements This work was supported by CAREER award MCB-0347317 from the National Science Foundation to EVS. The authors thank J.L. Bose for contributing to Fig. 2 .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00216-006-0730-9">doi:10.1007/s00216-006-0730-9</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16953316">pmid:16953316</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ttb3yagmtvcr3l74rfcbsf5hai">fatcat:ttb3yagmtvcr3l74rfcbsf5hai</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170811113007/http://bomi.ou.edu/dunn/reprints/reference_1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3a/26/3a267f706cc9f1080cb85e3ac62c0ad5d94bdb19.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00216-006-0730-9"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Core Principles of Bacterial Autoinducer Systems

Burkhard A. Hense, Martin Schuster
<span title="2015-02-18">2015</span> <i title="American Society for Microbiology"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6degphsfcjfjnhtermmfa2ndre" style="color: black;">Microbiology and Molecular Biology Reviews</a> </i> &nbsp;
Work in this review was supported by a grant from the National Science Foundation (MCB1158553 to M.S.), by a fellowship from the Alexander von Humboldt Foundation (to M.S.), and by the GSF-National Research  ...  Center for Environment and Health supporting the project network Molecular Interactions in the Rhizosphere (to B.A.H.).  ...  We are aware that an unambiguous decision, whether a molecule is actually a signal in this sense or not, is often difficult and may depend on the specific situation.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1128/mmbr.00024-14">doi:10.1128/mmbr.00024-14</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25694124">pmid:25694124</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4402962/">pmcid:PMC4402962</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vygoncb635a6zifqgjlsrmpzke">fatcat:vygoncb635a6zifqgjlsrmpzke</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190428061830/https://mmbr.asm.org/content/mmbr/79/1/153.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/fe/b9/feb93a5f911f45849dda891d4b41a138e9ee377e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1128/mmbr.00024-14"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> asm.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4402962" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Quorum Sensing Communication: Molecularly Connecting Cells, Their Neighbors, and Even Devices

Sally Wang, Gregory F. Payne, William E. Bentley
<span title="2020-03-13">2020</span> <i title="Annual Reviews"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gfirc723dzdz7iulptpcvn5nhm" style="color: black;">Annual Review of Chemical and Biomolecular Engineering</a> </i> &nbsp;
Quorum sensing (QS) is a molecular signaling modality that mediates molecular-based cell–cell communication.  ...  Prevalent in nature, QS networks provide bacteria with a method to gather information from the environment and make decisions based on the intel.  ...  of Health (R21EB024102).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1146/annurev-chembioeng-101519-124728">doi:10.1146/annurev-chembioeng-101519-124728</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32168999">pmid:32168999</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/y4rvnpzxgrarzorctnhsqvw4pa">fatcat:y4rvnpzxgrarzorctnhsqvw4pa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200507193851/https://www.annualreviews.org/doi/pdf/10.1146/annurev-chembioeng-101519-124728" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/dd/04/dd0445337e1ae3786be021d299fe493b9ae01cd8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1146/annurev-chembioeng-101519-124728"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Hacking into bacterial biofilms: a new therapeutic challenge

Christophe Bordi, Sophie de Bentzmann
<span title="">2011</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n2kosjut4jfnrju2a4howa5iyu" style="color: black;">Annals of Intensive Care</a> </i> &nbsp;
In response to the perception of environmental signals by sensing systems, appropriate responses are triggered, leading to biofilm formation.  ...  It is governed by social rules, based on the production and use of "public" goods, with actors and recipients.  ...  Acknowledgements The authors thank Steve Garvis for having kindly reviewed the English language of the manuscript.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/2110-5820-1-19">doi:10.1186/2110-5820-1-19</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21906350">pmid:21906350</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3224501/">pmcid:PMC3224501</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vlz2s3furreylj6cruvf77ciqq">fatcat:vlz2s3furreylj6cruvf77ciqq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170811004903/https://annalsofintensivecare.springeropen.com/track/pdf/10.1186/2110-5820-1-19?site=annalsofintensivecare.springeropen.com" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ee/98/ee9880f4aa2357e193aa76836fc58d93f5c19760.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/2110-5820-1-19"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224501" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Crosstalk between endophytes and a plant host within information-processing networks

N. O. Kozyrovska
<span title="2013-05-20">2013</span> <i title="Institute of Molecular Biology and Genetics (NAS Ukraine)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/54ogdzgafjdi7gxqctdq7l4xxm" style="color: black;">Biopolymers and Cell</a> </i> &nbsp;
The role of endophytic microbiota in the processing of information may be presumed, taking into account a plant-microbial co-evolution and empirical data.  ...  Since the literature are beginning to emerge on this topic, in this article, I review key works in the field of plant-endophytes interactions in the context of information processing and represent the  ...  How adaptive social interactions evolve in the endophytosphere? What are the parameters, governing the success of cooperative traits?  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7124/bc.00081d">doi:10.7124/bc.00081d</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vkuedhyuejgixaqf2qjz5wkzn4">fatcat:vkuedhyuejgixaqf2qjz5wkzn4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180721170550/http://www.biopolymers.org.ua/pdf/en/29/3/234/biopolym.cell-2013-29-3-234-en.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/61/65/616563aa560de4ddeab345524cf2682f3b056390.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7124/bc.00081d"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Intercellular positive-feedback loops promote the evolutionary stability of microbial cooperative behaviors [article]

Ishay Ben-Zion, Avigdor Eldar
<span title="2019-03-09">2019</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
or a quorum-sensing signaling molecule, activates its own production in all surrounding cells.  ...  Here we investigate the role of intercellular feedbacks in the maintenance of bacterial cooperation.  ...  These networks integrate information from the environment with information on the cell state in order to reach a "decision" on whether or not to express a certain trait and to which extent.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/571562">doi:10.1101/571562</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/i5kbwqclobdwbelq3jinetzeoa">fatcat:i5kbwqclobdwbelq3jinetzeoa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190501154108/https://www.biorxiv.org/content/biorxiv/early/2019/03/09/571562.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/1b/5e/1b5e037948398162107c395cbb420fec849dcc14.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/571562"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Global Consensus Theorem and Self-Organized Criticality: Unifying Principles for Understanding Self-Organization, Swarm Intelligence and Mechanisms of Carcinogenesis

Simon Rosenfeld
<span title="">2013</span> <i title="SAGE Publications"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/psgd7a5lyjefrm5xily4wpqkku" style="color: black;">Gene Regulation and Systems Biology</a> </i> &nbsp;
The GCT and SOC, separately or in combination, provide a conceptual basis for understanding the phenomena of self-organization occurring in large communities without involvement of a supervisory authority  ...  Universality of the mechanistic principles outlined by GCT allows for a unified approach to such diverse systems as biological networks, communities of social insects, robotic communities, microbial communities  ...  Prorok of the National Cancer Institute, Division of Cancer Prevention, for valuable help in the preparation of this manuscript.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4137/grsb.s10885">doi:10.4137/grsb.s10885</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23471309">pmid:23471309</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3583443/">pmcid:PMC3583443</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/kn7aaccdtfffragxmzcvti4w2q">fatcat:kn7aaccdtfffragxmzcvti4w2q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180720083418/http://insights.sagepub.com/redirect_file.php?fileId=4791&amp;filename=3551-GRSB-Global-Consensus-Theorem-and-Self-Organized-Criticality:-Unifying-Prin.pdf&amp;fileType=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/96/46/964648b96406d92b1a6d68b27266a29e923e4199.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4137/grsb.s10885"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3583443" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Engineering ecosystems and synthetic ecologies

Michael T. Mee, Harris H. Wang
<span title="">2012</span> <i title="Royal Society of Chemistry (RSC)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/zcnlz4nminfhjcp5esifetrr4u" style="color: black;">Molecular Biosystems</a> </i> &nbsp;
Here, we provide a review of recent progress in engineering natural and synthetic microbial ecosystems.  ...  Instead, engineered microbial ecosystems are likely to be more robust and able to achieve complex tasks at the spatial and temporal resolution needed for truly programmable biology.  ...  Quorum sensing is the ability of cells to detect population density by measuring the concentration of a membrane-permeable chemical signal.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1039/c2mb25133g">doi:10.1039/c2mb25133g</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22722235">pmid:22722235</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3430802/">pmcid:PMC3430802</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2psspvtj2vaqbhez5qquo3lv5u">fatcat:2psspvtj2vaqbhez5qquo3lv5u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200501085324/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3430802&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c8/0b/c80b36a49b6c01fde7f38d5b7daf0159e3c0f0b7.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1039/c2mb25133g"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3430802" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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