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Building a Semantic Health Data Warehouse: Evaluation of a search tool in Clinical trials (Preprint)

Romain Lelong, Lina F. Soualmia, Julien Grosjean, Mehdi Taalba, Stéfan J. Darmoni
2019 JMIR Medical Informatics  
The semantic health data warehouse relies on 3 distinct semantic layers: (1) a terminology and ontology portal, (2) a semantic annotator, and (3) a semantic search engine and NoSQL (not only structured  ...  The huge amount of clinical, administrative, and demographic data recorded and maintained by hospitals can be consistently aggregated into health data warehouses with a uniform data model.  ...  Acknowledgments The authors are grateful to Nikki Sabourin-Gibbs, RUH, for help in editing the paper.  ... 
doi:10.2196/13917 pmid:31859675 pmcid:PMC6942180 fatcat:rhicbo6lk5fuvlnaod3eioiw7y

LORD: a phenotype-genotype semantically integrated biomedical data tool to support rare disease diagnosis coding in health information systems

Remy Choquet, Meriem Maaroufi, Yannick Fonjallaz, Albane de Carrara, Pierre-Yves Vandenbussche, Ferdinand Dhombres, Paul Landais
2015 AMIA Annual Symposium Proceedings  
(phenotypes) and known genetic mutations (genotype).  ...  The Linking Open data for Rare Diseases (LORD) web portal we developed stands as the first attempt to fill this gap by offering an integrated view of 8,400 rare diseases linked to more than 14,500 signs  ...  Acknowledgements The French Ministry of Health funded this work under the second national plan for rare diseases.  ... 
pmid:26958175 pmcid:PMC4765596 fatcat:wjb4hphnlrbx5fbrvjedtkluv4

Cross-lingual access to biomedical terminologies and ontologies

Julien Grosjean, Lina Soualmia, Tayeb Merabti, Nicolas Griffon, Badisse Dahamna, Stéfan Darmoni, Cismef
The Health Terminology/Ontology Portal (HeTOP) is a repository dedicated to health professionals and students.  ...  Non-European languages have been integrated recently. The conceptual approach used in the model allows integration of any language while maintaining valid relations between concepts.  ...  This meta-model has been validated as we managed to integrate not only any terminology into it, but also ontologies [4] .  ... 

Teaching medicine with a terminology/ontology portal

Julien Grosjean, Tayeb Merabti, Nicolas Griffon, Badisse Dahamna, Stéfan Darmoni
To integrate new resources into HeTOP, three steps are necessary: (1) designing a meta-model into which each terminology (or ontology) can be integrated, (2) developing a process to include terminologies  ...  into HeTOP, (3) building and integrating existing and new inter & intra-terminology semantic harmonization into HeTOP.  ...  Acknowledgments We are grateful to Nikki Sabourin, Rouen University Hospital, for reviewing the manuscript in English.  ... 

Serveur terminologique inter-lingue : vers des applications pratiques

Stefan Darmoni
To integrate terminologies and ontology into EHTOP, three steps are necessary: (1) designing a meta-model into which each terminology and ontology can be integrated, (2) developing a process to include  ...  terminologies into EHTOP,  into French: FMA, HPO, SNOMED CT, MEDLINEplus  Restricted access to the other terminologies (2,250 registred)  Cooperation with BioPortal: Clement Jonquet & Mark Musen  ...