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The Maximum Clique Enumeration Problem: Algorithms, Applications and Implementations [chapter]

John D. Eblen, Charles A. Phillips, Gary L. Rogers, Michael A. Langston
2011 Lecture Notes in Computer Science  
MCE can also be solved in principle using more modern algorithms based in part on vertex cover and the theory of fixed-parameter tractability (FPT).  ...  MCE is closely related to two other well-known and widely-studied problems: the maximum clique optimization problem, which asks us to determine the size of a largest clique, and the maximal clique enumeration  ...  This research was supported in part by the National Institutes of Health under grants R01-MH-074460, U01-AA-016662 and R01-AA-018776, and by the U.S.  ... 
doi:10.1007/978-3-642-21260-4_30 fatcat:gxkozkdr6fg6bka5h66rz2376q

The maximum clique enumeration problem: algorithms, applications, and implementations

John D Eblen, Charles A Phillips, Gary L Rogers, Michael A Langston
2012 BMC Bioinformatics  
MCE can also be solved in principle using more modern algorithms based in part on vertex cover and the theory of fixed-parameter tractability (FPT).  ...  MCE is closely related to two other well-known and widely-studied problems: the maximum clique optimization problem, which asks us to determine the size of a largest clique, and the maximal clique enumeration  ...  This research was supported in part by the National Institutes of Health under grants R01-MH-074460, U01-AA-016662 and R01-AA-018776, and by the U.S.  ... 
doi:10.1186/1471-2105-13-s10-s5 pmid:22759429 pmcid:PMC3382443 fatcat:7k4xqtqxgnhrzdur26p73fga2m

Recent Advances in Practical Data Reduction [article]

Faisal Abu-Khzam, Sebastian Lamm, Matthias Mnich, Alexander Noe, Christian Schulz, Darren Strash
2020 arXiv   pre-print
Over the last two decades, significant advances have been made in the design and analysis of fixed-parameter algorithms for a wide variety of graph-theoretic problems.  ...  Moreover, we describe concrete techniques that may be useful for future implementations in the area and give open problems and research questions.  ...  Partially supported by DFG grants MN 59/1-1 and SCHU 2567/1-2.  ... 
arXiv:2012.12594v3 fatcat:vpsucno5cvgotovfiihkyyytba

Genome-Scale Computational Biology and Bioinformatics in Australia

Mark A. Ragan, Tim Littlejohn, Bruce Ross, Philip E. Bourne
2008 PLoS Computational Biology  
[19] and dynamic spatial processes in endosomes and membranes [20] ; comparative genomics [21] ; and transcriptome analysis [22] including the use of SOLiD sequencing.  ...  After this he moved to IBM, where he was responsible for solution architecture and implementation for life sciences industries for five years, leading the implementation of a clinical research data repository  ... 
doi:10.1371/journal.pcbi.1000068 pmid:18769502 pmcid:PMC2440818 fatcat:i5i4ywyjxzebreq6kc5p3a5aoq

Western Medical Research Conference 2017 ( Formerly Western Regional Meeting ) Camel, California, January 26–28, 2017

2016 Journal of Investigative Medicine  
Methods Used 93 boys with KS age 4-12 years were randomized 1:1 to receive oxandrolone (0.06 mg/kg/day) or placebo for 2 years.  ...  ACC is a rare malignancy with an incidence of 1-2 per 1 million cases per year.  ...  Methods Used Case study, statistical analysis was not performed.  ... 
doi:10.1136/jim-2016-000365.1 fatcat:4g7yajiqd5evxalwbsmimjlzk4

2020 Western Medical Research Conference

2019 Journal of Investigative Medicine  
Methods used We implemented the Rules-Based Method to identify individual or multiple pathogens implicated in each pneumonia case for 218 patients.  ...  A portion of the data is included in the IMPLEMENT Collaborative study, however a larger population of patients is included in our dataset.  ...  We present a case of NK/T cell lymphoma in a male with recurrent aspiration pneumonia due to complication of his disease. Methods used Retrospective Study.  ... 
doi:10.1136/jim-2019-wmrc fatcat:cw2dtzk5vzc2bmd4wbujao6igm

Conference 2013: Personalized Medicine & Individualized Drug Delivery. An international symposium held jointly by CSPS and CC-CRS, Vancouver, BC, Canada, June 2013

Beverley Christina Berekoff
2013 Journal of Pharmacy & Pharmaceutical Sciences  
This case-study shows the use of DoE to determine the optimum concentration of the preservative system (space design) in the development of a fluid emulsion for eye region.  ...  FIH Program 1 followed the traditional linear approach where each of the 3 studies was designed in a separate protocol, using fixed dose levels established following completion and data analysis of the  ...  Here we show a method for delivery of siRNA in lipid nanoparticles (LNPs) that provides a highly effective method for silencing neuronal gene expression in the brain.  ... 
doi:10.18433/j3v314 fatcat:i5xfz5fwm5bqpjlbc7s5prfmru

Summaries submitted

2018 Advances in Animal Biosciences  
Microsoft Word, Microsoft Excel, and SPSS were used for data processing, analysis, and interpretation of information. Results A perception of the change in climate was done by questioner survey.  ...  The study followed a randomised block design with 6 replicates per treatment. Emissons were measured using static chambers (N 2 O) and wind tunnels (NH 3 ).  ...  We thank the farmers for access to their farms and their data. Acknowledgements SRUC and Hoofprints are grateful to Innovate UK for funding this work.  ... 
doi:10.1017/s2040470018000031 fatcat:l5kf3kspwjb4nokzjkbpgchn6u

Western Medical Research Conference 2019 (Formerly Western Regional Meeting) Camel, California, January 24–26 2019

2019 Journal of Investigative Medicine  
Methods used Based on our study of 502 female patients, 157 reported a history of pregnancy.  ...  Purpose of study A common gain-of-function promoter variant in the MUC5B gene is the strongest risk factor for the development of idiopathic pulmonary fibrosis (IPF).  ...  Our study uses a computational algorithm, compressive sensing (CS) with total variation (TV) to shorten SPECT imaging times in studies of patients with Parkinson's Disease (PD).  ... 
doi:10.1136/jim-2018-000939.64 fatcat:cfvir6qxcfghjf6nzfbrgix54q

ESICM LIVES 2016: part three

T. Velasquez, G. Mackey, J. Lusk, U. G. Kyle, T. Fontenot, P. Marshall, L. S. Shekerdemian, J. A. Coss-Bu, A. Nishigaki, T. Yatabe, T. Tamura, K. Yamashita (+2609 others)
2016 Intensive Care Medicine Experimental  
Methods: We used the administrative claims data of all Diagnosis Procedure Combination (DPC) hospitals in Japan from April 1, 2011 to March 31, 2012, and retrospectively reviewed the number and outcome  ...  The results suggest that AM could be useful for LCOS prediction. More data are necessary to confirm the role in the prediction of relevant outcomes.  ...  (FPT) appears in 17 % of cases.  ... 
doi:10.1186/s40635-016-0100-7 fatcat:ymmv7gxkdjdq5jq3idaxr46knu

Survival from cancer of the pancreas in England and Wales up to 2001

N Starling, D Cunningham
2008 British Journal of Cancer  
Skoudy) 108 | 3.2 The cell biology of pancreatic cancer: 5 questions for the next 5 years (F.X. Real, A. Rodolosse and A.  ...  Hingorani) 170 | 3.6 Hollowshperes as in-vitro model for differentiation of ductal adenocarcinoma of the pancreas (H.  ...  Acknowledgments The authors thank Glynis Owens and Prof. Doessant Yves, Department of Surgery of Verona for their support in preparation of the manuscript in the English version.  ... 
doi:10.1038/sj.bjc.6604577 pmid:18813250 pmcid:PMC2557510 fatcat:6n26q7r2qbatnnsgawhc5nxvt4


2018 Seibutsu Butsuri  
Biophysical Society of Japan (BSJ) grants "Early Career Award in Biophysics" and "Early Career Presentation Award" to young BSJ members for their excellent presentations that show great potential to contribute  ...  Up to five awardees of the Early Career Award in Biophysics will be selected and announced at the banquet 3SEA-5 光遺伝子操作による単一の糸球体の活性により誘因される恐怖行動の探索 Immobility responses are induced by photoactivation of  ...  In the present study, we develop a four-dimensional structure analysis method of single molecule measurement data by HS-AFM combined with coarse-grained molecular simulation using data assimilation with  ... 
doi:10.2142/biophys.58.s1 fatcat:6slkwnu64fen7cjixehxrcmdzm

Abstracts from the Food Allergy and Anaphylaxis Meeting 2016

Guillaume Pouessel, Claire Claverie, Julien Labreuche, Jean-Marie Renaudin, Aimée Dorkenoo, Mireille Eb, Anne Moneret-Vautrin, Antoine Deschildre, Stephane Leteurtre, Linus Grabenhenrich, Margitta Worm, Sabine Dölle (+922 others)
2017 Clinical and Translational Allergy  
Acknowledgements: This work was supported by grants from University of Rijeka ( and  ...  This was implemented in a pilot study and data used to develop a modified PECO approach to the full systematic review.  ...  Methods: The authors did a retrospective analysis of all cases of anaphylaxis to paracetamol studied in our DAU between January 2011 and December 2015. The data were analysed using SPSS, version 21.  ... 
doi:10.1186/s13601-017-0142-2 fatcat:a4mvu3ximrh4jehswiovkjbjlm

European Obesity Summit (EOS) - Joint Congress of EASOand IFSO-EC, Gothenburg, Sweden, June 1 - 4, 2016: Abstracts

2016 Obesity Facts  
Disclosure: No conflict of interest declared PO3.011 Correction of cardiovascular risk in patients with morbid obesity using bariatric surgery Shkroba A. 1 , Mitchenko O. 1 , Lavryk A. 2 Acknowledgement  ...  , involved in the study.  ...  Given the paucity of available data, the heterogeneity of study designs used, and exposures tested, no quantitative meta-analysis was justified.  ... 
doi:10.1159/000446744 pmid:27238363 pmcid:PMC5672850 fatcat:fcs3p4t5hzh4bbvcudqle2sunu


2017 Advances in Animal Biosciences  
Conclusion This experiment is part of a larger study in which supplementing nitrate or increasing the level of dietary lipid have been shown to be effective at reducing methane emissions from beef cattle  ...  Inclusion of nitrate or increasing the dietary lipid content in the diet of finishing beef cattle, with the primary aim to mitigate methane emissions, does not adversely affect sensory quality of meat.  ...  Thanks also to the Director General (TALIRI) for permission to use the dataset for this study.  ... 
doi:10.1017/s2040470017001479 fatcat:2dyhwra345df3laaku53oq6xi4
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