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ProvenanceWeek 2020: ReproduceMeGit: A Visualization Tool for Analyzing Reproducibility of Jupyter Notebooks
[article]
2020
Figshare
This will help repository users and owners to reproduce and directly analyze and assess the reproducibility of any GitHub repository containing Jupyter Notebooks. ...
This presentation is given in ProvenanceWeek2020.This slide presents ReproduceMeGit, a visualization tool for analyzing the reproducibility of Jupyter Notebooks. ...
Computational Notebooks ➢ Large-scale studies on notebooks ➢ usage and structure [Adam Rule et al. ...
doi:10.6084/m9.figshare.12529604.v1
fatcat:4r6ejhyyfvcirlga45gynf7bfe
Bugarium: 3d interaction for supporting large-scale bug repositories analysis
2014
Companion Proceedings of the 36th International Conference on Software Engineering - ICSE Companion 2014
We present Bugarium that integrate 3D Motion Controller and datadriven documents to ease both interaction and visualization on a large-scale bug repository. ...
An user study shows that Bugarium made users satisfied while using it to interact and visualize a large-scale bug tracking system. ...
on a large-scale bug repositories. ...
doi:10.1145/2591062.2591125
dblp:conf/icse/YongpisanpopHM14
fatcat:ke3u7h2mvfdilagx5x5yrhvytu
VR-Based Sensor Management System for USN-Based Air Quality Monitoring
2009
2009 Fourth International Conference on Computer Sciences and Convergence Information Technology
We introduce a visualization system of micro-scale air quality monitoring system in the virtual reality environment. ...
For the adaptive visualization, the visualization and interaction data are separated from air quality data. ...
Finally, we constructed a large display system for easy access to the air quality information in public place. ...
doi:10.1109/iccit.2009.69
fatcat:gn4yfj3um5dztbhxdfixnsew6i
SemMedDB: a PubMed-scale repository of biomedical semantic predications
2012
Bioinformatics
We propose the repository as a knowledge resource that can assist in hypothesis generation and literature-based discovery in biomedicine as well as in clinical decision-making support. ...
Availability and implementation: The SemMedDB repository is available as a MySQL database for non-commercial use at http://skr3. nlm.nih.gov/SemMedDB. An UMLS Metathesaurus license is required. ...
Large-scale information extraction in the form of semantic relations is increasingly proposed for advanced knowledge management and discovery systems (Bjo¨rne et al., 2010 (Bjo¨rne et al., , 2012 Cohen ...
doi:10.1093/bioinformatics/bts591
pmid:23044550
pmcid:PMC3509487
fatcat:zkwx45vttfgllnprk5q2e76me4
Metabolic pathway databases and model repositories
2017
Quantitative Biology
at large. ...
The review aims to help researchers choose a suitable database or model repository according to the information and data required, by providing an insight look of each pathway resource. ...
Labena, Yi-Zhou Gao, Chuan Dong, Hong-li Hua and Feng-Biao Guo declare that they have no conflict of interest. ...
doi:10.1007/s40484-017-0108-3
fatcat:j6osebecqjehzj6lkchtldkwke
Methods for visual mining of genomic and proteomic data atlases
2012
BMC Bioinformatics
Visual exploration of the large-scale atlas data sets allows researchers to mine data to find new meaning and make sense at scales from single samples to entire populations. ...
Ultimately these visual tools enable new inferences, new analyses and further refinement of the large scale data being provided in atlases such as PeptideAtlas and The Cancer Genome Atlas. ...
Acknowledgements This work was supported by grants U24CA143835 and R01CA137442 from the National Cancer Institute, P50GM076547 and R01GM087221 from the National Institute of General Medical Sciences, and ...
doi:10.1186/1471-2105-13-58
pmid:22524279
pmcid:PMC3352268
fatcat:ac4khd4tmbedjiu7yuja3lypmq
Large-scale neuroanatomical visualization using a manifold embedding approach
2010
2010 IEEE Symposium on Visual Analytics Science and Technology
Our workflow implements predefined metrics for clustering and classification, and data projection schemes to aid in visualization. ...
We present a unified framework for data processing, mining and interactive visualization of largescale neuroanatomical databases. ...
Our goal is to enable large-scale informatics, mining, and visualization of the existing neuroimaging data repositories by developing streamlined data processing work-flows and visualizing the results ...
doi:10.1109/vast.2010.5652532
pmid:21318096
pmcid:PMC3037590
dblp:conf/ieeevast/JoshiBH10
fatcat:4m2fc7lfrnbdnbwkezjwilyviu
Browsing large-scale cheminformatics data with dimension reduction
2011
Concurrency and Computation
Visualization of large-scale high dimensional data tool is highly valuable for scientific discovery in many fields. ...
PubChemBrowse is built around in-house high performance parallel MDS (Multi-Dimensional Scaling) and GTM (Generative Topographic Mapping) services and supports fast interaction with an external property ...
DATA VISUALIZATION AND REMOTE DATA ACCESS Large scale data visualization is an active research area in many fields of science: The Sloan Digital Sky Survey (SDSS) project [2] for astronomy, UCSC [3] ...
doi:10.1002/cpe.1781
fatcat:ffby3z6ptzgkvbeqc6sfh3wts4
Webzeitgeist
2013
Proceedings of the SIGCHI Conference on Human Factors in Computing Systems - CHI '13
This idea is manifest in Webzeitgeist, a platform for large-scale design mining comprising a repository of over 100,000 Web pages and 100 million design elements. ...
However, while visual presentation is an intrinsic part of the Web, traditional data mining techniques ignore render-time page structures and their attributes. ...
For more information, please visit http://hci.stanford.edu/research/webzeitgeist. ...
doi:10.1145/2470654.2466420
dblp:conf/chi/KumarSTLAKT13
fatcat:7uv72ozh3jbmde3xg2mcrautby
Browsing large scale cheminformatics data with dimension reduction
2010
Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing - HPDC '10
Visualization of large-scale high dimensional data tool is highly valuable for scientific discovery in many fields. ...
PubChemBrowse is built around in-house high performance parallel MDS (Multi-Dimensional Scaling) and GTM (Generative Topographic Mapping) services and supports fast interaction with an external property ...
DATA VISUALIZATION AND REMOTE DATA ACCESS Large scale data visualization is an active research area in many fields of science: The Sloan Digital Sky Survey (SDSS) project [2] for astronomy, UCSC [3] ...
doi:10.1145/1851476.1851549
dblp:conf/hpdc/ChoiBQFCW10
fatcat:jwjbvabe3rgp5botbvcggcwtlm
VizNet: Towards A Large-Scale Visualization Learning and Benchmarking Repository
[article]
2019
arXiv
pre-print
In this paper, we present VizNet: a large-scale corpus of over 31 million datasets compiled from open data repositories and online visualization galleries. ...
To demonstrate VizNet's utility as a platform for conducting online crowdsourced experiments at scale, we replicate a prior study assessing the influence of user task and data distribution on visual encoding ...
VizNet is informed and inspired by the digital experimentation capabilities of large-scale data repositories in machine learning research. ...
arXiv:1905.04616v1
fatcat:d46eqdu55fbv7ely5u7h3jhmnu
NetworkRepository: An Interactive Data Repository with Multi-scale Visual Analytics
[article]
2015
arXiv
pre-print
Unlike other data repositories (e.g., UCI ML Data Repository, and SNAP), the network data repository (networkrepository.com) allows users to not only download, but to interactively analyze and visualize ...
Network Repository (NR) is the first interactive data repository with a web-based platform for visual interactive analytics. ...
Acknowledgments We thank all of the donors who contributed data to the repository and all others who have supported and continue to support this effort. ...
arXiv:1410.3560v2
fatcat:lm7ejqowdrbm3huj6ycd562rxq
Content-Based Medical Image Retrieval and Intelligent Interactive Visual Browser for Medical Education, Research and Care
2021
Diagnostics
search for and efficiently navigate through a large-scale medical imaging repository, even if it has been set with incomplete and curated metadata. ...
Yet, to date, browsing of large-scale medical image repositories has been troublesome, time-consuming, and generally limited by text search engines. ...
Acknowledgments: We thank Miguel Angel Jordan and Mariela Yañez for their management support of the current project. ...
doi:10.3390/diagnostics11081470
fatcat:3z4qgfeh5za65inmcmhk5qunuu
Informatics Resources for Electron Tomography
2003
Microscopy and Microanalysis
At the National Center for Microscopy and Imaging Research, we are developing several informatics-based approaches both to increase the throughput of large scale light and electron microscopic studies ...
In the molecular realm, large shared data repositories like the Protein Data Bank have been well established and are proving to be indispensable research tools. ...
In the molecular realm, large shared data repositories like the Protein Data Bank have been well established and are proving to be indispensable research tools. ...
doi:10.1017/s1431927603445820
fatcat:cwdfobtmnzhljla5xlttrhzf34
Evaluating Visual Data Analysis Systems
2018
Proceedings of the Workshop on Human-In-the-Loop Data Analytics - HILDA'18
In their discussions, the group brainstormed initial steps towards new joint evaluation methods and developed a first concrete initiative -a trace repository of various real-world workloads and visual ...
In November 2017, members of both the Database and Visualization communities came together in a Dagstuhl seminar to discuss the grand challenges in the intersection of data analysis and interactive visualization ...
However, there is generally a lack of quantitative and comparative methods for evaluating the performance of large-scale visual exploration systems. ...
doi:10.1145/3209900.3209901
dblp:conf/sigmod/BattleABCEFSSW18
fatcat:k57wsmv2pbh53b7ronweskm7ga
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