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Accessing, analyzing and visualizing research data metadata using DataCite and Jupyter Notebooks

Anton Ninkov
2022 Zenodo  
Interest in measuring data citation and developing metrics for data is increasing.  ...  Despite this interest, research investigating data sharing, data reuse and data citation practices remains relatively nascent.  ...  Data citation Park, H., You, S., & Wolfram, D. (2018) . Informal data citation for data sharing and reuse is more common than formal data citation in biomedical fields.  ... 
doi:10.5281/zenodo.6564424 fatcat:agjpbl73dvaijpu3nhspuggozy

A decade of GigaScience: 10 years of the evolving genomic and biomedical standards landscape

Lynn M Schriml
2022 GigaScience  
Standardization of omics data drives FAIR data practices through community-built genomic data standards and biomedical ontologies.  ...  Today we are seeing the benefits of this multidecade groundswell to coordinate, exchange, and reuse data; to compare data across studies; and to integrate data across previously siloed resources.  ...  The Open Biological and Biomedical Ontologies Foundry's establishment of common principles for development, sharing, and reuse of biomedical terms demonstrates the efforts of communities tackling a common  ... 
doi:10.1093/gigascience/giac047 pmid:35579551 pmcid:PMC9112763 fatcat:oops6l2t4jff7efmw4pwlotv2m

Data citation needed

2019 Scientific Data  
Starting last month, publications at Scientific Data now include data citations in the main reference list, rather than in a separate data citations section. this change will be supported by changes to  ...  the underlying structure of our content to promote machine readability and reuse of links between scholarly articles and datasets. this aligns the journal with a roadmap for data citation co-developed  ...  With online data repositories playing an increasingly common role in research dissemination in all fields, it was well overdue for them to be considered as 'citeable' research outputs in their own right  ... 
doi:10.1038/s41597-019-0026-5 pmid:30971699 pmcid:PMC6472333 fatcat:fhqqoubiirdclgsbinyrbm545e

An examination of metadata practices for research data reuse: Characteristics and predictive probability of metadata elements

Min Sook Park, Hyoungjoo Park
2019 Malaysian Journal of Library & Information Science  
of metadata elements between data records cited more than twice and those cited only once.  ...  However, the topic of whether metadata is used in a way that encourages data reuse has been understudied.  ...  ACKNOWLEDGEMENT This research received no specific grant from any funding agency in the public, commercial, or not-for profit sectors.  ... 
doi:10.22452/mjlis.vol24no3.4 fatcat:vfwfsxnbgjei7mm2mgpyjpvj2m

An examination of research data sharing and re-use: implications for data citation practice

Hyoungjoo Park, Dietmar Wolfram
2017 Scientometrics  
This study examines characteristics of data sharing and data re-use in Genetics and Heredity, where data citation is most common.  ...  We explore data citations for Genetics and Heredity, as a case study by examining formal citations recorded in the DCI and informally by sampling a selection of papers for implicit data citations within  ...  Table 3 illustrates that co-author data self-citation or recitation is more common than bibliographic selfcitation.  ... 
doi:10.1007/s11192-017-2240-2 fatcat:rbicdhoslzemtmkkvravdfu4le

Why it takes a village to manage and share data [article]

Christine L. Borgman, Philip E. Bourne
2022 arXiv   pre-print
Governments, funding agencies, and international science organizations all will need to invest in commons approaches for data sharing to develop into a sustainable international ecosystem.  ...  Implementation plans for the National Institutes of Health policy for data management and sharing, which takes effect in 2023, provide an opportunity to reflect on the stakeholders, infrastructures, practice  ...  We thank Cam Mura, a senior scientist at the University of Virginia, and Megan Haas, a student at James Madison University, for creating the Data Village diagram that accompanies this article.  ... 
arXiv:2109.01694v2 fatcat:iepdduauhzb53ol6xgibwhwrhu

Sizing the Problem of Improving Discovery and Access to NIH-Funded Data: A Preliminary Study

Kevin B. Read, Jerry R. Sheehan, Michael F. Huerta, Lou S. Knecht, James G. Mork, Betsy L. Humphreys, Vincent Larivière
2015 PLoS ONE  
Objective This study informs efforts to improve the discoverability of and access to biomedical datasets by providing a preliminary estimate of the number and type of datasets generated annually by research  ...  It focuses on those datasets that are "invisible" or not deposited in a known repository.  ...  the Oak Ridge Institute for Science and Education.  ... 
doi:10.1371/journal.pone.0132735 pmid:26207759 pmcid:PMC4514623 fatcat:qxrlu5e3kzavdiqnclecqsbtqu

Alignment of biomedical data repositories with open, FAIR, citable and trustworthy principles [article]

Fiona Murphy, Michael Bar-Sinai, Maryann E Martone
2021 bioRxiv   pre-print
Increasing attention is being paid to the operation of biomedical data repositories in light of efforts to improve how scientific data is handled and made available for the long term.  ...  Together, these define a framework for data repositories to support Open, FAIR, Citable and Trustworthy (OFCT) data.  ...  in 2012 to provide information and services to basic and clinical biomedical researchers for data and resources relevant to diabetes, digestive and kidney diseases (referred to here as "dk"). dkNET is  ... 
doi:10.1101/2021.01.19.427362 fatcat:asps57nn5rb5vnmqrxa4ojicky

DDI and Enhanced Data Citation

Larry Hoyle, Mary Vardigan, Jay Greenfield, Sam Hume, Sanda Ionescu, Jeremy Iverson, John Kunze, Barry Radler, Wendy Thomas, Stuart Weibel, Michael Witt
2016 IASSIST Quarterly  
DDI and Enhanced Data Citation  ...  Wendy Thomas is the Director of the Data Access Core in the Minnesota Population Center (MPC) at the University of Minnesota and has been active in the data and information technology community for over  ...  25 years providing data research and support services to academic, governmental, non-profit, and for-profit researchers.  ... 
doi:10.29173/iq129 fatcat:yjkwiurtmzfargkjxbgybf3lcm

Grant proposal: Improving the visibility of scholarly software work

Impactstory Team, James Howison
2016 Figshare  
incentives for software work in scholarship."  ...  From the grant summary: "Our goal is to improve software in scholarship (science, engineering, and the humanities) by raising the visibility of software work as a contribution in the literature, thus improving  ...  Collaborators and Co-Editors Acknowledgments The full data set and analysis code for this article is available online at https://github.com/jameshowison/ softcite/.  ... 
doi:10.6084/m9.figshare.4214037.v1 fatcat:5knmxnjygffkhcqdl5aml72pgi

Accelerating Scientists' Knowledge Turns [chapter]

Carole Goble, David De Roure, Sean Bechhofer
2013 Communications in Computer and Information Science  
for scholarship, data, methods and software.  ...  A "knowledge turn" is a cycle of a process by a professional, including the learning generated by the experience, deriving more good and leading to advance.  ...  We thank Tim Clark for introducing us to Shapin  ... 
doi:10.1007/978-3-642-37186-8_1 fatcat:kchhsqimxzbadeabnz44yc4vl4

Big data from small data: data-sharing in the 'long tail' of neuroscience

Adam R Ferguson, Jessica L Nielson, Melissa H Cragin, Anita E Bandrowski, Maryann E Martone
2014 Nature Neuroscience  
The need for data-sharing standards and neuroinformatics infrastructure is more pressing than ever.  ...  Data sharing in the long tail is viewed as essential for increasing transparency, for mitigating against known biases in publication and for increasing data reuse by third parties 6, 7 .  ...  COMPETING FINANCIAL INTERESTS The authors declare competing financial interests: details are available in the online version of the paper. Reprints and permissions information is available  ... 
doi:10.1038/nn.3838 pmid:25349910 pmcid:PMC4728080 fatcat:hyj265wngrccbkikmzw5c7asr4

Grant proposal: Improving the visibility of scholarly software work

Impactstory Team, James Howison
2016 Figshare  
incentives for software work in scholarship."  ...  From the grant summary: "Our goal is to improve software in scholarship (science, engineering, and the humanities) by raising the visibility of software work as a contribution in the literature, thus improving  ...  Acknowledgments The full data set and analysis code for this article is available online at https://github.com/jameshowison/ softcite/.  ... 
doi:10.6084/m9.figshare.4214037.v2 fatcat:wvzhdzhqnfhrbbkkssqs22h2rm

The benefits of open research: How sharing can help researchers succeed

Erin McKiernan, Philip E. Bourne, C. Titus Brown, Stuart Buck, Amye Kenall, Jennifer Lin, Damon McDougall, Brian Nosek, Karthik Ram, Courtney Soderberg, Jeffrey R. Spies, Kaitlin Thaney (+3 others)
2016 Figshare  
We review literature demonstrating that open research is associated with gains in citation rate, media attention, collaboration opportunities, author reputation, funding opportunities, and more.  ...  This is a preprint, which has been submitted for publication in an open access journal.  ...  In addition to more citations, Pienta and colleagues 320 (2010) found that data sharing is associated with higher publication productivity[93].  ... 
doi:10.6084/m9.figshare.1619902.v5 fatcat:l44pkrv5xng23no3bbpgo5doly

Evaluating and Promoting Open Data Practices in Open Access Journals

Eleni Castro, Mercè Crosas, Alex Garnett, Kasey Sheridan, Micah Altman
2017 Journal of Scholarly Publishing  
These are potentially related because journal publication policies and practices both signal disciplinary norms and provide direct incentives for data sharing and citation.  ...  framework that integrates both previous studies and emerging taxonomies of data sharing and citation.  ...  Life and Environmental Sciences In the biomedical domain, several studies have examined journal policies related to data sharing and citation.  ... 
doi:10.3138/jsp.49.1.66 fatcat:c5swg227gvcljdxh353rtfqsyu
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