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Explainable AI for CNN-based prostate tumor segmentation in multi-parametric MRI correlated to whole mount histopathology

Deepa Darshini Gunashekar, Lars Bielak, Leonard Hägele, Benedict Oerther, Matthias Benndorf, Anca-L. Grosu, Thomas Brox, Constantinos Zamboglou, Michael Bock
<span title="2022-04-02">2022</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2bagfcobavabhds3rtf4xkgv54" style="color: black;">Radiation Oncology</a> </i> &nbsp;
The CNN uses a U-Net architecture which was trained on multi-parametric MRI data from 122 patients to automatically segment the prostate gland and prostate tumor lesions.  ...  The CNN achieved a mean Dice Sorensen Coefficient 0.62 and 0.31 for the prostate gland and the tumor lesions -with the radiologist drawn ground truth and 0.32 with whole-mount histology ground truth for  ...  ., Novi, MI, United States) in creation of new software and data processing techniques used in major parts of this work is gratefully acknowledged.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13014-022-02035-0">doi:10.1186/s13014-022-02035-0</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/35366918">pmid:35366918</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8976981/">pmcid:PMC8976981</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gfjy2z7r7bfvxd45pwedzj7fii">fatcat:gfjy2z7r7bfvxd45pwedzj7fii</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220422154246/https://ro-journal.biomedcentral.com/track/pdf/10.1186/s13014-022-02035-0.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c7/6f/c76fdfa3d117e72218fc970322f386beaf0a8307.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13014-022-02035-0"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8976981" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Machine learning applications in prostate cancer magnetic resonance imaging

Renato Cuocolo, Maria Brunella Cipullo, Arnaldo Stanzione, Lorenzo Ugga, Valeria Romeo, Leonardo Radice, Arturo Brunetti, Massimo Imbriaco
<span title="2019-08-07">2019</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/cfc7hazrmfhnjazjfkwn6bq5oa" style="color: black;">European Radiology Experimental</a> </i> &nbsp;
With this review, we aimed to provide a synopsis of recently proposed applications of machine learning (ML) in radiology focusing on prostate magnetic resonance imaging (MRI).  ...  The following potential clinical applications in different settings are outlined, many of them based only on MRI-unenhanced sequences: gland segmentation; assessment of lesion aggressiveness to distinguish  ...  [54] trained a ML algorithm with paired CT and MRI datasets in order to generate synthetic CT images to be used for patient radiation therapy setup and dose calculation.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s41747-019-0109-2">doi:10.1186/s41747-019-0109-2</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31392526">pmid:31392526</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6686027/">pmcid:PMC6686027</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7x3egaxnjzcdpngl5vogww27gi">fatcat:7x3egaxnjzcdpngl5vogww27gi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200216120146/https://eurradiolexp.springeropen.com/track/pdf/10.1186/s41747-019-0109-2" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/fd/81/fd814f1aa5328f54ac72adb672e22535dfc4a22e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s41747-019-0109-2"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6686027" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Spectral embedding-based registration (SERg) for multimodal fusion of prostate histology and MRI

Eileen Hwuang, Mirabela Rusu, Sudha Karthigeyan, Shannon C. Agner, Rachel Sparks, Natalie Shih, John E. Tomaszewski, Mark Rosen, Michael Feldman, Anant Madabhushi, Sebastien Ourselin, Martin A. Styner
<span title="2014-03-21">2014</span> <i title="SPIE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ha25cznnjncxtjoykhsg6fz5ly" style="color: black;">Medical Imaging 2014: Image Processing</a> </i> &nbsp;
Nine pairs of synthetic T1-weighted to T2-weighted brain MRI were registered under the following conditions: five levels of noise (0%, 1%, 3%, 5%, and 7%) and two levels of bias field (20% and 40%) each  ...  We also spatially align twenty-six ex vivo histology sections and in vivo prostate MRI in order to map the spatial extent of prostate cancer onto corresponding radiologic imaging.  ...  Summary of experimental protocol for synthetic T1-w and T2-w BrainWeb and clinical prostate histology and MRI data.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1117/12.2044317">doi:10.1117/12.2044317</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/miip/HwuangRKASSTRFM14.html">dblp:conf/miip/HwuangRKASSTRFM14</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4saaiovoyfgrddhfuq7vkcovoa">fatcat:4saaiovoyfgrddhfuq7vkcovoa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20151115003326/http://engineering.case.edu/centers/ccipd/sites/ccipd.case.edu/files/Spectral_embedding_Based_registration_SERg.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ec/f3/ecf300ea8401940308ce9ead21d12db7dd212dd6.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1117/12.2044317"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Computer-aided diagnosis: detection and localization of prostate cancer within the peripheral zone

Andrik Rampun, Zhili Chen, Paul Malcolm, Bernie Tiddeman, Reyer Zwiggelaar
<span title="2015-09-22">2015</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wy5icxf3uzd53k62u67jkxqtki" style="color: black;">International Journal for Numerical Methods in Biomedical Engineering</a> </i> &nbsp;
We are focusing on developing a CAD tool for the detection and localisation of abnormal region within the PZ in T2-MRI imaging.  ...  Secondly, the development of the proposed method and its application in prostate cancer detection and localisation using a single MRI modality with the results comparable to the state-of-the-art multi-modality  ...  This work was funded in part by the NISCHR Biomedical Research Unit for Advanced Medical Imaging and Visualization.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/cnm.2745">doi:10.1002/cnm.2745</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26313267">pmid:26313267</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/wavimncnhjba5lzyw2qxdjcxmm">fatcat:wavimncnhjba5lzyw2qxdjcxmm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171001004154/https://core.ac.uk/download/pdf/30717595.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/8c/92/8c9261642961385c660973bde0d0587189b63e5d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/cnm.2745"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a>

Elastic registration of multimodal prostate MRI and histology via multiattribute combined mutual information

Jonathan Chappelow, B. Nicolas Bloch, Neil Rofsky, Elizabeth Genega, Robert Lenkinski, William DeWolf, Anant Madabhushi
<span title="2011-03-21">2011</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4xxxfsh2pjc4nhsa3qijpqv6zy" style="color: black;">Medical Physics (Lancaster)</a> </i> &nbsp;
Results: Elastic registration using the multivariate MI formulation is demonstrated for 150 corresponding sets of prostate images from 25 patient studies with T2-weighted and dynamic-contrast enhanced  ...  Purpose: By performing registration of preoperative multiprotocol in vivo magnetic resonance ͑MR͒ images of the prostate with corresponding whole-mount histology ͑WMH͒ sections from postoperative radical  ...  T2-w MRI, for the synthetic data set.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1118/1.3560879">doi:10.1118/1.3560879</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21626933">pmid:21626933</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3078156/">pmcid:PMC3078156</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5xk7kmfge5d7fobjrl462yryfy">fatcat:5xk7kmfge5d7fobjrl462yryfy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20151115011339/http://engineering.case.edu/centers/ccipd/sites/ccipd.case.edu/files/publications/Elastic-registration-of-multimodal-prostate-MRI-.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ee/af/eeaf10c9031f06122296cd0b0091872871462fa8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1118/1.3560879"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3078156" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Machine Learning in Prostate MRI for Prostate Cancer: Current Status and Future Opportunities

Huanye Li, Chau Hung Lee, David Chia, Zhiping Lin, Weimin Huang, Cher Heng Tan
<span title="2022-01-24">2022</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/abr6zdbfebblxlzh436eqtiagi" style="color: black;">Diagnostics</a> </i> &nbsp;
The Prostate Imaging Reporting and Data System (PI-RADS) is an established imaging-based scoring system that scores the probability of clinically significant prostate cancer on MRI to guide management.  ...  Advances in our understanding of the role of magnetic resonance imaging (MRI) for the detection of prostate cancer have enabled its integration into clinical routines in the past two decades.  ...  For prostate zones, WG = whole gland, PZ = peripheral zone, TZ = transition zone.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/diagnostics12020289">doi:10.3390/diagnostics12020289</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/35204380">pmid:35204380</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8870978/">pmcid:PMC8870978</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rpaecwqodveqplmvuyvu5ne52m">fatcat:rpaecwqodveqplmvuyvu5ne52m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220210073445/https://mdpi-res.com/d_attachment/diagnostics/diagnostics-12-00289/article_deploy/diagnostics-12-00289.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/80/bb/80bb962335ffa6243385facc63675e78659e9992.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/diagnostics12020289"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8870978" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Multimodal Self-Supervised Learning for Medical Image Analysis [article]

Aiham Taleb, Christoph Lippert, Tassilo Klein, Moin Nabi
<span title="2020-10-25">2020</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
In other words, we exploit synthetic images for self-supervised pretraining, instead of downstream tasks directly, in order to circumvent quality issues associated with synthetic images, while improving  ...  We showcase our approach on four downstream tasks: Brain tumor segmentation and survival days prediction using four MRI modalities, Prostate segmentation using two MRI modalities, and Liver segmentation  ...  In the BraTS and Prostate benchmarks, we use T2-weighted MRI. In the Prostate dataset, we use T2-weighted MRI scans to generate the ADC diffusion-weighted scans.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1912.05396v2">arXiv:1912.05396v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/klwchysg4ney3phlmlawyrzxvi">fatcat:klwchysg4ney3phlmlawyrzxvi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201029083358/https://arxiv.org/pdf/1912.05396v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d7/e0/d7e0e0ec66fa2ba969bfc2411dd2edac28bbe724.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1912.05396v2" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Normal and Variant Pelvic Anatomy on MRI

Ashish P. Wasnik, Michael B. Mazza, Peter S. Liu
<span title="">2011</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jgr55hkyijdqnlbn5usqhf5m4i" style="color: black;">Magnetic Resonance Imaging Clinics of North America</a> </i> &nbsp;
Sagittal T2-weighted image demonstrates anterior linear defect in the lower uterine segment (arrow) compatible with cesarean section scar.  ...  Finally, whole-pelvis imaging is performed using a wide FOV in conjunction with the surface coil.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.mric.2011.05.001">doi:10.1016/j.mric.2011.05.001</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21816330">pmid:21816330</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4y5fso5bzfezflwg7dflgleeom">fatcat:4y5fso5bzfezflwg7dflgleeom</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170810220309/http://www.xradiologist.com/resources/MRI-pelvis-normal-and-variants.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6b/0a/6b0ac658a51ab2bd335146e45500f38b5fb90d7c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.mric.2011.05.001"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Artificial Intelligence and Machine Learning in Prostate Cancer Patient Management—Current Trends and Future Perspectives

Octavian Sabin Tătaru, Mihai Dorin Vartolomei, Jens J. Rassweiler, Oșan Virgil, Giuseppe Lucarelli, Francesco Porpiglia, Daniele Amparore, Matteo Manfredi, Giuseppe Carrieri, Ugo Falagario, Daniela Terracciano, Ottavio de Cobelli (+3 others)
<span title="2021-02-20">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/abr6zdbfebblxlzh436eqtiagi" style="color: black;">Diagnostics</a> </i> &nbsp;
Digital pathology is becoming highly assisted by AI to help researchers in analyzing larger data sets and providing faster and more accurate diagnoses of prostate cancer lesions.  ...  When applied to diagnostic imaging, AI has shown excellent accuracy in the detection of prostate lesions as well as in the prediction of patient outcomes in terms of survival and treatment response.  ...  Quantitative results showed no significant differences in dose volume histogram and planning target volumes, showing that in the future ML-MRI methods could generate synthetic CT images from MRI and could  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/diagnostics11020354">doi:10.3390/diagnostics11020354</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33672608">pmid:33672608</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7924061/">pmcid:PMC7924061</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/jqktyzjrhjh2jaxvlpk3pomube">fatcat:jqktyzjrhjh2jaxvlpk3pomube</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210228081018/https://res.mdpi.com/d_attachment/diagnostics/diagnostics-11-00354/article_deploy/diagnostics-11-00354-v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/84/69/8469b25830a0cbb3c1d238a00e5cfec28dc7222a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/diagnostics11020354"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7924061" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Learning Non-rigid Deformations for Robust, Constrained Point-based Registration in Image-Guided MR-TRUS Prostate Intervention

John A. Onofrey, Lawrence H. Staib, Saradwata Sarkar, Rajesh Venkataraman, Cayce B. Nawaf, Preston C. Sprenkle, Xenophon Papademetris
<span title="">2017</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kpkfymbkufcnzjfc5ydyokby4y" style="color: black;">Medical Image Analysis</a> </i> &nbsp;
State-of-the-art, clinical MR-TRUS image fusion relies upon semi-automated segmentations of the prostate in both the MR and the TRUS images to perform non-rigid surface-based registration of the gland.  ...  Segmentation of the prostate in TRUS imaging is itself a challenging task and prone to high variability.  ...  Validation Using Synthetic Data We leveraged our large database to generate a set of realistic, synthetic TRUS prostate shapes with known non-rigid deformations and known segmentation errors on which we  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.media.2017.04.001">doi:10.1016/j.media.2017.04.001</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28431275">pmid:28431275</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5514316/">pmcid:PMC5514316</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/x6zntiw2gfgg5hk5zmuoy5t6k4">fatcat:x6zntiw2gfgg5hk5zmuoy5t6k4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200502025743/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC5514316&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/86/56/8656bd79f9c69943841bdf5c5ef6b6f35ecc97c8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.media.2017.04.001"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5514316" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Registration of pre-surgical MRI and whole-mount histopathology images in prostate cancer patients with radical prostatectomy via RAPSODI [article]

Mirabela Rusu, Christian A. Kunder, Nikola C. Teslovich, Jeffrey B Wang, Rewa R. Sood, Wei Shao, Leo C. Chan, Robert West, Richard Fan, Pejman Ghanouni, James B. Brooks, Geoffrey A. Sonn
<span title="2019-09-21">2019</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
543 histopathology slices that were registered to corresponding T2 weighted MRI slices.  ...  Magnetic resonance imaging (MRI) has great potential to improve prostate cancer diagnosis.  ...  All summarized methods require as input the in vivo pre-surgical T2 weighted MRI, digitized serial histopathology images, and the segmentation of the prostate on MRI and histopathology images; Additional  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1907.00324v2">arXiv:1907.00324v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/636ftyvq7zf25k2yfnwgrdqp64">fatcat:636ftyvq7zf25k2yfnwgrdqp64</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200823120116/https://arxiv.org/pdf/1907.00324v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/14/bb/14bb0fa0131c3f2466c2b1d02e6d49c31257fddf.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1907.00324v2" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Front Matter: Volume 12032

Ivana Išgum, Olivier Colliot
<span title="2022-04-25">2022</span> <i title="SPIE"> Medical Imaging 2022: Image Processing </i> &nbsp;
These two-number sets start with 00,  ...  diffusion-weighted data using tagged magnetic resonance imaging [ models for organ contouring in head and neck radiotherapy [12032-13] 0G Automatic classification of MRI contrasts using a deep siamese  ...  inference for quantifying inter-observer variability in segmentation of anatomical structures [12032-55] 1N Parotid gland segmentation with nnU-Net: deployment scenario and inter-observer variability  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1117/12.2638192">doi:10.1117/12.2638192</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ikfgnjefaba2tpiamxoftyi6sa">fatcat:ikfgnjefaba2tpiamxoftyi6sa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220516005524/https://www.spiedigitallibrary.org/conference-proceedings-of-spie/12032/1203201/Front-Matter-Volume-12032/10.1117/12.2638192.pdf?SSO=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/45/9f/459fe55beb48b53257ac0600608686dbe2e881f4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1117/12.2638192"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Multiparametric MRI for Prostate Cancer Characterization: Combined Use of Radiomics Model with PI-RADS and Clinical Parameters

Piotr Woźnicki, Niklas Westhoff, Thomas Huber, Philipp Riffel, Matthias F. Froelich, Eva Gresser, Jost von Hardenberg, Alexander Mühlberg, Maurice Stephan Michel, Stefan O. Schoenberg, Dominik Nörenberg
<span title="2020-07-02">2020</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2zwku6u6nfdcri773tpisi6ldi" style="color: black;">Cancers</a> </i> &nbsp;
Segmentations of the whole prostate glands and index lesions were performed manually in apparent diffusion coefficient (ADC) maps and T2-weighted MRI.  ...  Radiomic features were extracted from regions corresponding to the whole prostate gland and index lesion.  ...  Image Segmentations For each patient, the whole prostate gland, peripheral and transition zones, as well as index lesions of the prostate were manually segmented on T2-weighted images.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/cancers12071767">doi:10.3390/cancers12071767</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32630787">pmid:32630787</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pbd4aj6wljf6nh4gd4r2g6go4u">fatcat:pbd4aj6wljf6nh4gd4r2g6go4u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200723045026/https://res.mdpi.com/d_attachment/cancers/cancers-12-01767/article_deploy/cancers-12-01767.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b2/35/b2359cbf5f7c1064df8cf81163933c4b683a02b7.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/cancers12071767"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

Molecular imaging and fusion targeted biopsy of the prostate

Baowei Fei, Peter T. Nieh, Viraj A. Master, Yun Zhang, Adeboye O. Osunkoya, David M. Schuster
<span title="2016-12-01">2016</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/f735wttfsfclvof43wc6r5wgjq" style="color: black;">Clinical and translational imaging</a> </i> &nbsp;
Results-Molecular imaging with PET and MRI shows promising results in the early detection of prostate cancer.  ...  Purpose-This paper provides a review on molecular imaging with positron emission tomography (PET) and magnetic resonance imaging (MRI) for prostate cancer detection and its applications in fusion targeted  ...  Fig. 1 .Fig. 2 . 12 Multiparametric MRI of the prostate: T2-weighted MRI (left), DCE-MRI (middle), and diffusion-weighted MRI (right) of the same Imaging.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s40336-016-0214-7">doi:10.1007/s40336-016-0214-7</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28971090">pmid:28971090</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5621648/">pmcid:PMC5621648</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zogw3brx5bd3lerltvgxbaqjna">fatcat:zogw3brx5bd3lerltvgxbaqjna</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190227235555/http://pdfs.semanticscholar.org/88b2/ce1f8c3ff5bc4507e200342c9ff831498859.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/88/b2/88b2ce1f8c3ff5bc4507e200342c9ff831498859.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s40336-016-0214-7"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5621648" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

18F-Choline PET/MRI: The Additional Value of PET for MRI-Guided Transrectal Prostate Biopsies

M. Piert, J. Montgomery, L. P. Kunju, J. Siddiqui, V. Rogers, T. Rajendiran, T. D. Johnson, X. Shao, M. S. Davenport
<span title="2016-03-16">2016</span> <i title="Society of Nuclear Medicine"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/es34xtfdxrgybg2kmdq2n5xqry" style="color: black;">Journal of Nuclear Medicine</a> </i> &nbsp;
The biopsy procedure was performed after registration of real-time transrectal ultrasound with T2-weighted MR and included imageguided cores plus standard cores.  ...  Methods: Within an ongoing prospective clinical trial, hybrid 18 F-choline PET/CT and multiparametric 3T MRI (mpMRI) of the pelvis were performed in 36 subjects with a rising prostate-specific antigen  ...  In vivo MRI pelvis examinations of the prostate gland with and without contrast material was performed before biopsy.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2967/jnumed.115.170878">doi:10.2967/jnumed.115.170878</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26985061">pmid:26985061</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5819614/">pmcid:PMC5819614</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/prhv3msbgvbz5b642alob2ueau">fatcat:prhv3msbgvbz5b642alob2ueau</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190302212659/http://pdfs.semanticscholar.org/a9f9/cf517d987489c00615702a46c4dc1acfc6fc.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a9/f9/a9f9cf517d987489c00615702a46c4dc1acfc6fc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2967/jnumed.115.170878"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819614" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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