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Accelerated Resting-State Functional Magnetic Resonance Imaging Using Multiband Echo-Planar Imaging with Controlled Aliasing

Hyung Suk Seo, Kyung Eun Jang, Dingxin Wang, In Seong Kim, Yongmin Chang
<span title="">2017</span> <i title="Korean Society of Magnetic Resonance in Medicine (KAMJE)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/w3v7oxwwuvgpzijg5z7zsdnf7i" style="color: black;">Investigative Magnetic Resonance Imaging</a> </i> &nbsp;
Changes in functional connectivity in resting-state networks (RSNs) have been observed in a variety of diseases (4) .  ...  Dynamic fluctuations in the functional connectivity of resting-state networks at higher frequencies might represent a balance a c b Fig. 5 .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.13104/imri.2017.21.4.223">doi:10.13104/imri.2017.21.4.223</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/72mcxncz6bhe3f3ousgasnamjm">fatcat:72mcxncz6bhe3f3ousgasnamjm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20181030051542/https://synapse.koreamed.org/Synapse/Data/PDFData/1040IMRI/imri-21-223.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f8/7a/f87a03f4959590609e35a94fa2fc1c9c811d2dfc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.13104/imri.2017.21.4.223"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Minimal Specifications for Non-Human Primate MRI: Challenges in Standardizing and Harmonizing Data Collection

Joonas A. Autio, Qi Zhu, Xiaolian Li, Matthew F. Glasser, Caspar M. Schwiedrzik, Damien A. Fair, Jan Zimmermann, Essa Yacoub, Ravi S. Menon, David C. Van Essen, Takuya Hayashi, Brian Russ (+1 others)
<span title="2021-04-18">2021</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
Streamlined acquisition and analysis protocols would accelerate and improve these efforts.  ...  This will improve reproducibility of results, and accelerate the convergence between NHP and human neuroimaging strategies which will ultimately benefit fundamental and translational brain science.  ...  Human data were provided by the Human Connectome Project, WU-Minn Consortium (Principal Investigators: David Van Essen and Kamil Ugurbil; 1U54MH091657) funded by the 16 NIH Institutes and Centers that  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2021.118082">doi:10.1016/j.neuroimage.2021.118082</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33882349">pmid:33882349</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC8594288/">pmcid:PMC8594288</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rcy2qe2o75gybigrak6hyigupa">fatcat:rcy2qe2o75gybigrak6hyigupa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210718063124/https://lirias2repo.kuleuven.be/bitstream/handle/123456789/675495/Minimal%20specifications%20for%20non-human%20primate%20MRI%20-%20Challenges%20in%20standardizing%20and%20harmonizing%20data%20collection.pdf;jsessionid=16909F2E89FFD56743559F3113536B7B?sequence=2" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/bd/44/bd44a987ff9573778b1f7ba107a6e4ec5d770546.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2021.118082"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8594288" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Does higher sampling rate (multiband + SENSE) improve group statistics - An example from social neuroscience block design at 3T

Ritu Bhandari, Evgeniya Kirilina, Matthan Caan, Judith Suttrup, Teresa De Sanctis, Lorenzo De Angelis, Christian Keysers, Valeria Gazzola
<span title="2020-03-12">2020</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
Multiband (MB) or Simultaneous multi-slice (SMS) acquisition schemes allow the acquisition of MRI signals from more than one spatial coordinate at a time.  ...  Most early evaluation of the performance of MB acquisition employed resting state fMRI or the most basic tasks.  ...  We thank the Spinoza centre for neuroimaging where the scanning was performed and the staff members of Spinoza centre specially Dr. Pieter Buur and Dr.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2020.116731">doi:10.1016/j.neuroimage.2020.116731</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32173409">pmid:32173409</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7181191/">pmcid:PMC7181191</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4aznvh7omrenbliwiibuxha5vi">fatcat:4aznvh7omrenbliwiibuxha5vi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210427173704/https://pure.uva.nl/ws/files/53767155/1_s2.0_S1053811920302184_main.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/66/90/66902968888ec594e98a2445bf7c9b95667d8c0e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2020.116731"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7181191" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Minimal Specifications for Non-Human Primate MRI: Challenges in Standardizing and Harmonizing Data Collection [article]

Joonas A. Autio, Qi Zhu, Xiaolian Li, Matthew F. Glasser, Caspar M. Schwiedrzik, Damien A. Fair, Jan Zimmermann, Essa Yacoub, Ravi S. Menon, David C. Van Essen, Takuya Hayashi, Brian Russ (+1 others)
<span title="2020-10-09">2020</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Streamlined acquisition and analysis protocols would accelerate and improve these efforts.  ...  This will improve reproducibility of results, and accelerate the convergence between NHP and human neuroimaging strategies which will ultimately benefit fundamental and translational brain science.  ...  Longer resting-state fMRI scan duration improves the quality of functional connectivity metrics.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2010.04325v1">arXiv:2010.04325v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6ytdjkbw3fbo5athaczixfod64">fatcat:6ytdjkbw3fbo5athaczixfod64</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201220174818/https://arxiv.org/ftp/arxiv/papers/2010/2010.04325.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b9/20/b920c789b8d97cdd2886a74d6da2fc0edf6223ab.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2010.04325v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Does higher sampling rate (Multiband + SENSE) benefit the detection of task correlated BOLD for cognitive neuroscience applications at 3T? [article]

Ritu Bhandari, Evgeniya Kirilina, Matthan Caan, Judith Suttrup, Teresa de Sanctis, Lorenzo de Angelis, Christian Keysers, Valeria Gazzola
<span title="2019-09-09">2019</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Multiband (MB) or Simultaneous multi‐slice (SMS) acquisition schemes allow the acquisition of MRI signals from more than one spatial coordinate at a time.  ...  Most early evaluation of the performance of MB acquisition employed resting state fMRI or the most basic tasks.  ...  GLM for Resting State Networks: Multiband has so far been mainly used and validated for resting state studies, where it has been suggested to improve the ability to detect RSNs.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/762831">doi:10.1101/762831</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mg6j72mzybhhjpcksuc2uiqmym">fatcat:mg6j72mzybhhjpcksuc2uiqmym</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200710100152/https://www.biorxiv.org/content/biorxiv/early/2019/09/09/762831.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/58/62/586274d7cdf2d7cf358c1c7d1477d1390da3116d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/762831"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects

Michael P. Harms, Leah H. Somerville, Beau M. Ances, Jesper Andersson, Deanna M. Barch, Matteo Bastiani, Susan Y. Bookheimer, Timothy B. Brown, Randy L. Buckner, Gregory C. Burgess, Timothy S. Coalson, Michael A. Chappell (+29 others)
<span title="2018-09-24">2018</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
The result will be a large, rich, multi-modal, and freely available set of consistently acquired data for use by the scientific community to investigate and define normative developmental and aging related  ...  lifespan, collecting structural, resting-state fMRI, task-fMRI, diffusion, and perfusion MRI in participants from 5 to 100+ years of age.  ...  We also thank Prantik Kundu for discussions and assistance involving multi-echo denoising.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2018.09.060">doi:10.1016/j.neuroimage.2018.09.060</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30261308">pmid:30261308</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6484842/">pmcid:PMC6484842</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bf3sbvie4jbelp5dnmpeehg47m">fatcat:bf3sbvie4jbelp5dnmpeehg47m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210525234948/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC6484842&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d1/97/d197f8dcd2843a73080d40a209cbfb199ba87d49.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2018.09.060"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6484842" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Multiband multi-echo simultaneous ASL/BOLD for task-induced functional MRI

Alexander D. Cohen, Andrew S. Nencka, Yang Wang, Jay Pillai
<span title="2018-02-01">2018</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
This study applies a sequence combining a multiband acquisition with four echoes for simultaneous BOLD and pseudo-continuous ASL (pCASL) echo planar imaging (MBME ASL/BOLD) for block-design task-fMRI.  ...  The MBME ASL/BOLD sequence was applied to a fingertapping task functional MRI (fMRI) experiment.  ...  We thank Marc Lebel, PhD for assistance with the ASL portion of the pulse sequence, and Ajit Shankaranarayanan, PhD and Matthew J.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0190427">doi:10.1371/journal.pone.0190427</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29389985">pmid:29389985</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5794066/">pmcid:PMC5794066</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xqiskx4ltnfztcgde4to4matwe">fatcat:xqiskx4ltnfztcgde4to4matwe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180723033202/http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0190427&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/dd/c2/ddc2eb627ac7a390b77292e5269fe9558d47d294.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0190427"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5794066" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Evaluation of multi-echo ICA denoising for task based fMRI studies: Block designs, rapid event-related designs, and cardiac-gated fMRI

Javier Gonzalez-Castillo, Puja Panwar, Laura C. Buchanan, Cesar Caballero-Gaudes, Daniel A. Handwerker, David C. Jangraw, Valentinos Zachariou, Souheil Inati, Vinai Roopchansingh, John A. Derbyshire, Peter A. Bandettini
<span title="">2016</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
16 Multi-echo fMRI, particularly the multi-echo independent component analysis (ME-17 ICA) algorithm, has previously proven useful for increasing the sensitivity and 18 reducing false positives for functional  ...  MRI (fMRI) based resting state connectivity 19 studies.  ...  Thus, we extend prior work focused primarily on the evaluation 720 of ME-ICA within the framework of resting-state and functional connectivity fMRI 721 studies. 722 ME-ICA for cardiac-gated acquisitions  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2016.07.049">doi:10.1016/j.neuroimage.2016.07.049</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27475290">pmid:27475290</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5026969/">pmcid:PMC5026969</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/e72kqfmldrcy3db5fpwm5c2ozm">fatcat:e72kqfmldrcy3db5fpwm5c2ozm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200306022218/https://addi.ehu.es/bitstream/handle/10810/20852/Evaluation%20of%20multi-echo_Gonzalez.pdf;jsessionid=DB45E9C9B57BA990ED0373F6C0902CAF?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e0/49/e0490299be6714c5c4a0a5eb153b2abbd2248825.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2016.07.049"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5026969" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Simultaneous multislice (SMS) imaging techniques

Markus Barth, Felix Breuer, Peter J. Koopmans, David G. Norris, Benedikt A. Poser
<span title="2015-08-26">2015</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/34p2n5u2vjfgrf7j2rmkmfhogu" style="color: black;">Magnetic Resonance in Medicine</a> </i> &nbsp;
Unlike inplane parallel imaging this can have only a marginal intrinsic signalto-noise ratio penalty, and the full acceleration is attainable at fixed echo time, as is required for many echo planar imaging  ...  Simultaneous multislice imaging (SMS) using parallel image reconstruction has rapidly advanced to become a major imaging technique.  ...  M.B. acknowledges funding from ARC Future Fellowship grant and NHMRC grant, and P.K. acknowledges funding from the Wellcome Trust. All authors contributed equally to this work.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/mrm.25897">doi:10.1002/mrm.25897</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26308571">pmid:26308571</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4915494/">pmcid:PMC4915494</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mp5hkqrqajdkbodgwm7zv7lufy">fatcat:mp5hkqrqajdkbodgwm7zv7lufy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210428144500/https://repository.ubn.ru.nl/bitstream/handle/2066/156958/1/156958.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e9/79/e97952ef543300595d556c2dbcc16ec9527392ba.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/mrm.25897"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> wiley.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915494" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The Human Connectome Project: A data acquisition perspective

D.C. Van Essen, K. Ugurbil, E. Auerbach, D. Barch, T.E.J. Behrens, R. Bucholz, A. Chang, L. Chen, M. Corbetta, S.W. Curtiss, S. Della Penna, D. Feinberg (+15 others)
<span title="">2012</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
, including a new 7T scanner, a customized 3T scanner, and improved MR pulse sequences.  ...  This review summarizes the data acquisition plans being implemented by a consortium of HCP investigators who will study a population of 1200 subjects (twins and their non-twin siblings) using multiple  ...  Funded in part by the Human Connectome Project (1U54MH091657) from the 16 NIH Institutes and Centers that Support the NIH Blueprint for Neuroscience Research, and by the McDonnell Center for Systems Neuroscience  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2012.02.018">doi:10.1016/j.neuroimage.2012.02.018</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22366334">pmid:22366334</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3606888/">pmcid:PMC3606888</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/firqe2mmjjdj7dhjbrbwytpbsa">fatcat:firqe2mmjjdj7dhjbrbwytpbsa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200208020631/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3606888&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/85/e4/85e4f2391e546b718f02d563dc3d387de285f265.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2012.02.018"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3606888" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Improving sensitivity, specificity, and reproducibility of individual brainstem activation

Eva Matt, Florian Ph. S. Fischmeister, Ahmad Amini, Simon D. Robinson, Alexandra Weber, Thomas Foki, Elke R. Gizewski, Roland Beisteiner
<span title="2019-08-21">2019</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/h7z73zcffbg2jo4rudbgl6nvfu" style="color: black;">Brain Structure and Function</a> </i> &nbsp;
Functional images were acquired with a 7 T MR scanner using an optimized multiband EPI sequence.  ...  Applying specific physiological noise correction methods improves reproducibility and reliability of brainstem activation encouraging future clinical applications.  ...  This work was supported by the Vienna Anniversary Foundation for Higher Education (H-263692/2013) and the Austrian Science Fund projects KLI455FW and 31452.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00429-019-01936-3">doi:10.1007/s00429-019-01936-3</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31435738">pmid:31435738</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6778541/">pmcid:PMC6778541</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ssxmixa5fbh6hml3fdvubclwbe">fatcat:ssxmixa5fbh6hml3fdvubclwbe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200310025042/https://link.springer.com/content/pdf/10.1007%2Fs00429-019-01936-3.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e2/2e/e22ea4c498d59a888f7e09cb6e1a7acda46244f2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00429-019-01936-3"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6778541" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Imaging human connectomes at the macroscale

R Cameron Craddock, Saad Jbabdi, Chao-Gan Yan, Joshua T Vogelstein, F Xavier Castellanos, Adriana Di Martino, Clare Kelly, Keith Heberlein, Stan Colcombe, Michael P Milham
<span title="">2013</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/l6cw2tyvgrhytbvantrj2os37y" style="color: black;">Nature Methods</a> </i> &nbsp;
This review provides a survey of magnetic resonance imaging-based measurements of functional and structural connectivity.  ...  At macroscopic scales, the human connectome is composed of anatomically distinct brain areas, the structural pathways connecting them, and their functional interactions.  ...  We would additionally like to acknowledge our colleagues who have allowed us to re-use their figures, and the helpful suggestions of the reviewers.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nmeth.2482">doi:10.1038/nmeth.2482</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23722212">pmid:23722212</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4096321/">pmcid:PMC4096321</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ahp5n642fzahpdjl2nke67dwxq">fatcat:ahp5n642fzahpdjl2nke67dwxq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200209035152/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC4096321&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a1/05/a105f234f31352f26ba61578b43063215bf5fe0d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nmeth.2482"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4096321" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Optimizing BOLD sensitivity in the 7T Human Connectome Project resting-state fMRI protocol using plug-and-play parallel transmission

Vincent Gras, Benedikt A. Poser, Xiaoping Wu, Raphaël Tomi-Tricot, Nicolas Boulant
<span title="2019-03-25">2019</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
The Human Connectome Project (HCP) has a 7T component that aims to study the human brain's organization and function with high spatial and temporal resolution fMRI and diffusion-weighted acquisitions.  ...  In this work, we use parallel transmission (pTX) Universal Pulses (UP) to improve the flip angle homogeneity and demonstrate their application to highly accelerated multi-band EPI (MB5 and GRAPPA2, as  ...  The 7T HCP resting state fMRI (RS-fMRI) protocol comprises a ten-fold accelerated (Â5 simultaneous multi-slice and Â2 in-plane acceleration) multi-band echo-planar imaging (MB-EPI, a.k.a.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2019.03.040">doi:10.1016/j.neuroimage.2019.03.040</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30923027">pmid:30923027</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dqtoiagdbrbvlefq7hqfe275aq">fatcat:dqtoiagdbrbvlefq7hqfe275aq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210715072838/https://cris.maastrichtuniversity.nl/ws/files/63879233/Poser_2019_optimizing_bold_sensitivity_in_the.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b0/fb/b0fbbbda6c02920eec90b6a76c6f7b0a8e1ab9d5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2019.03.040"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline

Bhim M Adhikari, Neda Jahanshad, Dinesh Shukla, David C Glahn, John Blangero, Richard C Reynolds, Robert W Cox, Els Fieremans, Jelle Veraart, Dmitry S Novikov, Thomas E Nichols, L Elliot Hong (+2 others)
<span title="">2018</span> <i > <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/d4nr2uqysjfnpiksvyxq54p5bm" style="color: black;">Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing</a> </i> &nbsp;
We developed a multi-site rsfMRI analysis pipeline to allow research groups around the world to process rsfMRI scans in a harmonized way, to extract consistent and quantitative measurements of connectivity  ...  We used seed-based connectivity and dual-regression approaches to show that the rsfMRI signal is consistently heritable across twenty major functional network measures.  ...  Louis for allowing the use of their computational facility for this project.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29218892">pmid:29218892</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5728672/">pmcid:PMC5728672</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/k43mab5eyresbiyuuivky73eje">fatcat:k43mab5eyresbiyuuivky73eje</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171211014800/https://psb.stanford.edu/psb-online/proceedings/psb18/adhikari.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/66/cd/66cd83373b1bd13f17890049d6f1bbe8af262875.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5728672" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline

Bhim M. Adhikari, Neda Jahanshad, Dinesh Shukla, David C. Glahn, John Blangero, Richard C. Reynolds, Robert W. Cox, Els Fieremans, Jelle Veraart, Dmitry S. Novikov, Thomas E. Nichols, L. Elliot Hong (+2 others)
<span title="2017-11-17">2017</span> <i title="WORLD SCIENTIFIC"> Biocomputing 2018 </i> &nbsp;
We developed a multi-site rsfMRI analysis pipeline to allow research groups around the world to process rsfMRI scans in a harmonized way, to extract consistent and quantitative measurements of connectivity  ...  We used seedbased connectivity and dual-regression approaches to show that the rsfMRI signal is consistently heritable across twenty major functional network measures.  ...  Louis for allowing the use of their computational facility for this project.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1142/9789813235533_0029">doi:10.1142/9789813235533_0029</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6sr7azhcozdyjajax2koykwcv4">fatcat:6sr7azhcozdyjajax2koykwcv4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201107042039/https://ora.ox.ac.uk/objects/uuid:0919ea6d-188e-4cac-9608-5516042e0f7f/download_file?safe_filename=Bhim%2Bet%2Bal.%252C%2BHeritability%2Bestimates%2Bon%2Bresting%2Bstate%2BfMRI%2Bdata%2Busing%2BENIGMA%2Banalysis%2Bpipeline%252C%2BVoR.pdf&amp;file_format=application%2Fpdf&amp;type_of_work=Conference+item" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/73/17/73173db7cf711a7c75fc60c920cf4e9973068908.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1142/9789813235533_0029"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> worldscientific.com </button> </a>
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