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Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community

Surya Saha, Prashant S. Hosmani, Krystal Villalobos-Ayala, Sherry Miller, Teresa Shippy, Mirella Flores, Andrew Rosendale, Chris Cordola, Tracey Bell, Hannah Mann, Gabe DeAvila, Daniel DeAvila (+36 others)
2017 Database: The Journal of Biological Databases and Curation  
Conflict of interest. None declared.  ...  with Huanglongbing (HLB) or citrus greening disease.  ...  One of the major decisions taken by the ACP community as a result of this annotation effort and subsequent detailed evaluation of the Diaci1.1 genome was to generate an improved reference genome for ACP  ... 
doi:10.1093/database/bax032 pmid:29220441 pmcid:PMC5502364 fatcat:fnu3upwfebep5hn2jmbira3yhq

Improved annotation of the insect vector of Citrus greening disease: Biocuration by a diverse genomics community [article]

Surya Saha, Prashant S Hosmani, Krystal Villalobos-Ayala, Sherry Miller, Teresa Shippy, Andrew Rosendale, Chris Cordola, Tracey Bell, Hannah Mann, Gabe DeAvila, Daniel DeAvila, Zachary Moore (+36 others)
2017 bioRxiv   pre-print
HLB threatens citrus production worldwide. Suppression or reduction of the insect vector using chemical insecticides has been the primary method to inhibit the spread of citrus greening disease.  ...  The Asian citrus psyllid (Diaphorina citri Kuwayama) is the insect vector of the bacterium Candidatus Liberibacter asiaticus (CLas), the pathogen associated with citrus Huanglongbing (HLB, citrus greening  ...  The Maker genome annotation (v2.31.8) pipeline was used for calculating AED (33,41).  ... 
doi:10.1101/099168 fatcat:ia2oyh7t6favtddlwqa3q4ydr4

Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri

Teresa D. Shippy, Sherry Miller, Blessy Tamayo, Prashant S. Hosmani, Mirella Flores-Gonzalez, Lukas A. Mueller, Wayne B. Hunter, Susan J. Brown, Tom D'Elia, Surya Saha
2022 Gigabyte  
The Asian citrus psyllid, Diaphorina citri, carries the bacterium causing Huanglongbing, or citrus greening disease, a devastating citrus disease.  ...  We identified and annotated 12 chitinase family genes from D. citri as part of a community effort to create highquality gene models to aid the design of interdictory molecules for pest control.  ...  Josh Benoit for assistance with visualization of expression data.  ... 
doi:10.46471/gigabyte.46 fatcat:jlhqpxbaqvhdrlj2inofac2quy

Abstracts from the 5th International Research Conference on Huanglongbing

Organization IOCV
2017 Journal of citrus pathology  
A community-driven genome annotation has also identified a number of misassemblies and missing genes in the current genome.  ...  it vectors the devastating citrus greening bacterial disease.  ...  Citrus greening or huanglongbing (HLB) disease is associated with an increase in pre-harvest fruit drop, for which the molecular mechanisms remain unknown.  ... 
doi:10.5070/c441034714 fatcat:ytjrcafo7zh25ap2ij2uy7zbeu

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

Hartmut Foerster, Aureliano Bombarely, James N D Battey, Nicolas Sierro, Nikolai V Ivanov, Lukas A Mueller
2018 Database: The Journal of Biological Databases and Curation  
., Bombarely, A., Battey, J.N.D. et al. SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases.  ...  Abstract SolCyc is the entry portal to pathway/genome databases (PGDBs) for major species of the Solanaceae family hosted at the Sol Genomics Network.  ...  Another example for host-pathogen interactions is the citrus greening disease threatening a large proportion of the citrus production worldwide.  ... 
doi:10.1093/database/bay035 pmid:29762652 pmcid:PMC5946812 fatcat:s3r3n6tqyrbjvm3iakvag5gjs4

By land, air, and sea: hemipteran diversity through the genomic lens

Kristen A Panfilio, David R Angelini
2018 Current Opinion in Insect Science  
Thanks to a recent spate of sequencing projects, the Hemiptera are the first hemimetabolous insect order to achieve a critical mass of species with sequenced genomes, establishing the basis for comparative  ...  genomics of the bugs.  ...  Acknowledgments We thank Stephen Richards (Baylor College of Medicine) on behalf of the i5K community for championing insect genomics through the i5K pilot sequencing project and for suggesting the topic  ... 
doi:10.1016/j.cois.2017.12.005 pmid:29602356 fatcat:wbqwymft3nbuhht6zxoqllvm2u

Development on Citrus medica infected with 'Candidatus Liberibacter asiaticus' has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts

Laurynne C. Coates, Jaclyn Mahoney, John S. Ramsey, EricaRose Warwick, Richard Johnson, Michael J. MacCoss, Stuart B. Krasnoff, Kevin J. Howe, Kathy Moulton, Surya Saha, Lukas A. Mueller, David G. Hall (+4 others)
2020 PLoS ONE  
Huanglongbing (HLB) is a deadly, incurable citrus disease putatively caused by the unculturable bacterium, 'Candidatus Liberibacter asiaticus' (CLas), and transmitted by Diaphorina citri.  ...  Prior studies suggest D. citri transmits CLas in a circulative and propagative manner; however, the precise interactions necessary for CLas transmission remain unknown, and the impact of insect sex on  ...  Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.  ... 
doi:10.1371/journal.pone.0239771 pmid:33022020 fatcat:2e42h6t3fbagpksyvo7x7tp6lu

Endogenous viral element-derived piRNAs are not required for production of ping-pong-dependent piRNAs from Diaphorina citri densovirus [article]

Jared C Nigg, Yen-Wen Kuo, Bryce W Falk
2020 bioRxiv   pre-print
Furthermore, a recombinant Cricket paralysis virus containing a portion of the DcDV genome corresponding to the DcDV-derived EVE was not targeted by vpiRNAs during infection in D. citri harboring the EVE  ...  Here we describe a Diaphorina citri densovirus (DcDV)-derived EVE in the genome of Diaphorina citri.  ...  Improved 873 annotation of the insect vector of citrus greening disease: biocuration by a diverse 874 genomics community. Database. 2017;2017:bax032. 875 30. Luo Y, Agnarsson I.  ... 
doi:10.1101/2020.05.20.105924 fatcat:6rhffekb75dkrch6d6r75s5kyu

Abstracts of Presentations Development of the Hydro-Solar Thermotherapy (HSTT) for treatment of HLB infected citrus

G Aiken, T Gottwald, J Kainz, G Poole, J Truett
unpublished
Diaphorina citri, spreads a plant-infecting bacterium linked to Citrus greening disease, a worldwide threat to citrus sustainability.  ...  Bacteria transmission by the Asian citrus Psyllid, linking psyllid genomic/proteomic interactions is demonstrated.  ...  A community-driven genome annotation has also identified a number of misassemblies and missing genes in the current genome.  ... 
fatcat:5bhevhbhznazfggqdhh6ikgmyi