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Implementing a Registry Federation for Materials Science Data Discovery

Raymond L. Plante, Chandler A. Becker, Andrea Medina-Smith, Kevin Brady, Alden Dima, Benjamin Long, Laura M. Bartolo, James A. Warren, Robert J. Hanisch
2021 Data Science Journal  
We present the results of our successful piloting of a registry federation for materials science data discovery.  ...  experts to develop an international federation of registries that can be used for global discovery of data resources for materials science.  ...  This working group's largest accomplishment and its approach to data discovery was the development of a resource registry for materials science.  ... 
doi:10.5334/dsj-2021-015 pmid:34795758 pmcid:PMC8596377 fatcat:yemivdjc6jbsvla3qc2sgmhagi

A Controlled Vocabulary and Metadata Schema for Materials Science Data Discovery

Andrea Medina-Smith, Chandler A. Becker, Raymond L. Plante, Laura M. Bartolo, Alden Dima, James A. Warren, Robert J. Hanisch
2021 Data Science Journal  
The International Materials Resource Registries (IMRR) working group of the Research Data Alliance (RDA) was created to spur initial development of a federated registry system to allow for easier discovery  ...  and access to materials data.  ...  This paper presents part of this successful pilot of a registry federation for materials science data discovery.  ... 
doi:10.5334/dsj-2021-018 fatcat:uoutma3d5zbvlnye3l6ryloyme

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework

A. E. Bandrowski, J. Cachat, Y. Li, H. M. Muller, P. W. Sternberg, P. Ciccarese, T. Clark, L. Marenco, R. Wang, V. Astakhov, J. S. Grethe, M. E. Martone
2012 Database: The Journal of Biological Databases and Curation  
However, the nature of dense, multifaceted neuroscience data and the design of contemporary search engine systems makes efficient, reliable and relevant discovery of such information a significant challenge  ...  The breadth of information resources available to researchers on the Internet continues to expand, particularly in light of recently implemented data-sharing policies required by funding agencies.  ...  Acknowledgements We thank Mrs Andrea Stagg and many assistant curators for their hard work on the NIF Registry.  ... 
doi:10.1093/database/bas005 pmid:22434839 pmcid:PMC3308161 fatcat:tc4tvc4tmndsdo7vz52w4kwenq

EOSC-hub D11.2 - Training materials about competence centre services

Giuseppe La Rocca, Yin Chen
2020 Zenodo  
It includes the list of training events, materials, datasets and deployable training environments developed by the project and available in the online catalogue.  ...  The report also outlines the next year plan to improve the structure of the training catalogue and implement the recommendations and feedback collected during the first project review.  ...  In Table 5 , the number of page views measured for the implementation of a data management plan is shown.  ... 
doi:10.5281/zenodo.5033406 fatcat:canplxszifgfddm5vyuzfhckj4

Data Type Registries )DTR) Working Group

Larry Lannom, Daan Broekder, Giridhar Manepalli, Allison Powell
2020 Zenodo  
This presentation will focus on the need for and advantages of Data Type Registries and will provide a demonstration of the latest version of a registry prototype.  ...  A Data Type Registry provides a way to easily register detailed and structured descriptions of data that can range from simple single value elements up to complex multi-dimensional scientific datasets.  ...  registry system for such types is highly desirable and needs to accommodate each community's own requirements • Deployment of a prototype registry implementing one potential data model, against which  ... 
doi:10.5281/zenodo.3777123 fatcat:fp6gec4qjna3haf4ltxrp5fmaq

Informatics Infrastructure for the Materials Genome Initiative

Alden Dima, Sunil Bhaskarla, Chandler Becker, Mary Brady, Carelyn Campbell, Philippe Dessauw, Robert Hanisch, Ursula Kattner, Kenneth Kroenlein, Marcus Newrock, Adele Peskin, Raymond Plante (+7 others)
2016 JOM: The Member Journal of TMS  
A materials data infrastructure that enables the sharing and transformation of a wide range of materials data is an essential part of achieving the goals of the Materials Genome Initiative.  ...  and Technology Materials Resource Registry.  ...  ACKNOWLEDGEMENTS The authors would like to thank Raymundo Arroyave, Cate Brinson, Yannick Congo, Lucas Hale, Ya-Shian Li-Baboud, Greta Lindwall, Chris Muzny, Pierre Savonitto, Daniel Sauceda, and Richard Zhao for  ... 
doi:10.1007/s11837-016-2000-4 fatcat:k3s3v5qoindaxfrnajf2dl7k6y

D1.4 Registry release with comprehensive coverage of ELIXIR Node resources, including resource data format curation and analysis [article]

Jon Ison, Hans Ienasescu, Piotr Chmura, Veit Schwämmle, Hervé Ménager, Bryan Brancotte, Kenzo-Hugo Hillion, Matúš Kalaš, Ahto Salumetsm, Erik Jaaniso, Heidi Peterson, Séverine Duvaud (+12 others)
2019 Zenodo  
The objective of EXCELERATE Deliverable 1.4 is the development of a discovery portal ( built upon a federated curation of a registry of key software resources for bioinformatics worldwide.  ...  The core aim is to provide a practical portal that will help scientists with resource discovery and interoperability.  ...  discovery portal built upon a federated curation of a wide range of key resources for bioinformatics resources world-wide.  ... 
doi:10.5281/zenodo.3373344 fatcat:tvxhgpny25fczd4g3tcy5ehj4e

Igsn: International Geo Sample Number. Unambiguous Citation Of Physical Samples

Kerstin Lehnert
2015 Zenodo  
Presented at: Persistent Identifiers: Enabling Services for Data Intensive Research DataCite and EPIC Monday, September 21, 2015 from 1:00 PM to 6:00 PM (CEST) Paris, France  ...  physical collections IGSN ▪ Globally unique and persistent identifier for physical samples in the Earth Sciences ▪ guaranteed to be unique via a centralized control mechanism  ...  Why we need PIDs for samples ▪ Discovery & Access for Re-use and Reproducibility ▪ Samples need virtual representations. ▪ PIDs need to resolve to these virtual representations.  ... 
doi:10.5281/zenodo.31788 fatcat:22yie3nsszhi3jyy6e3gsy5pd4

Final EOSC Service Architecture

Leonardo Candela, Donatella Castelli, Franco Zoppi
2019 Zenodo  
from the perspective of EOSC as a whole.  ...  It sets the foundations characterising the EOSC System:(i) Its functionalities are provisioned as-a-Service; (ii) It is a highly distributed, evolving and heterogeneous hybrid cloud; (iii)Its operation  ...  Implementation The Open Science Policy Registry is planned to be implemented as a simple web-service, using XML or JSON.  ... 
doi:10.5281/zenodo.3258797 fatcat:dlqet5ofajeyjnr3mwjwmn7vqy

RDA groups and developments

Karsten Kryger Hansen
2019 Zenodo  
Biodiversity Data Integration Brokering Chemistry Research Data CODATA/RDA Research Data Science Schools for Low and Middle Income Countries Data Discovery Paradigms Data Economics Data  ...  FAIRSharing Registry: connecting data policies, standards & databases Harmonizing FAIR descriptions of observational data 14/06/2019 10 International Materials Resource Registries  ... 
doi:10.5281/zenodo.3247291 fatcat:zjyd4okcivbefizafrautpwefu

RDA groupsand developments

Karsten Kryger Hansen
2019 Zenodo  
Data Integration Brokering Chemistry Research Data CODATA/RDA Research Data Science Schools for Low and Middle Income Countries Data Discovery Paradigms Data Economics Data Fabric Data for  ...  Registry: connecting data policies, standards & databases Harmonizing FAIR descriptions of observational data 24/09/2019 10 International Materials Resource Registries Metadata  ... 
doi:10.5281/zenodo.3459155 fatcat:umrinsog6jcslcrci3e7z2otye

XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services

Johannes Wagener, Ola Spjuth, Egon L Willighagen, Jarl ES Wikberg
2009 BMC Bioinformatics  
Life sciences make heavily use of the web for both data provision and analysis.  ...  Results: We present a novel approach based on the open standard Extensible Messaging and Presence Protocol (XMPP), consisting of an extension (IO Data) to comprise discovery, asynchronous invocation, and  ...  ) for their help and maintenance of the servers dedicated for cloud computing in life science, and S.  ... 
doi:10.1186/1471-2105-10-279 pmid:19732427 pmcid:PMC2755485 fatcat:4uer2klj6rbnvkf2xb5ihus76m

Report: Workbench Integration Enabler: Implementation & Evaluation Of Impact

Herve Menager, Jon Ison, Kenzo-Hugo Hillion, Ivan Kuzmin, Anton Khodak, Eric Rasche, Hedi Peterson
2018 Zenodo  
use of workflows as a preferred environment for the convenient use of tools and data access, especially when resources must be used in combination with one another.  ...  In the context of a generic registry for bioinformatics software, such as, Galaxy instances constitute a major source of valuable content (online services and underlying tools).  ...  Objectives WP1 will deliver a discovery portal built upon a federated curation of a wide range of key resources for bioinformatics resources world-wide.  ... 
doi:10.5281/zenodo.1321853 fatcat:lw5ybygmqjftxmbkbqa364szta

Achieving Open Science in the European Open Science Cloud. Setting out OpenAIRE's vision and contribution to EOSC - Executive Summary

Natalia Manola, Najla Rettberg, Paolo Manghi, Mike Mertens, Birgit Schmidt, Tobias Steiner, Prodromos Tsiavos, Eloy Rodrigues, Nina Karlstrom, Mojca Kotar
2019 Zenodo  
The European Open Science Cloud (EOSC) is Europe's undertaking to address the rising field of datadriven research in a more efficient way, to break down walls in existing siloed approaches for access to  ...  role of open scientific communication and OpenAIRE participatory infrastructure as a vehicle to deliver Open Science in a trusted and reliable way.  ...  FEDERATION OF LEARNING MATERIAL: Develop and operate a Learning Material Registry as a core supporting mechanism for both trainers and trainees in EOSC.  ... 
doi:10.5281/zenodo.3470935 fatcat:klrwi2ywrra7tnfe5etvofl6aq

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia

Maria Victoria Schneider, Philippa C. Griffin, Sonika Tyagi, Madison Flannery, Saravanan Dayalan, Simon Gladman, Nathan Watson-Haigh, Philipp E. Bayer, Michael Charleston, Ira Cooke, Rob Cook, Richard J. Edwards (+6 others)
2017 Briefings in Bioinformatics  
He also develops software tools for proteomics that make better use of draft genome and transcriptome data for non-model organisms.  ...  He works on the development and application of tools for protein interaction motif discovery (SLiMSuite), and genomics with PacBio long-read DNA sequencing.  ...  Acknowledgements The authors are grateful to the ISAG for their time and availability; Jason Williams and Paul Flicek for their regular time and availability for discussions; Rafael Jimenez for his effort  ... 
doi:10.1093/bib/bbx071 pmid:29106479 fatcat:rddz4ymlandfvge6lknmcjn3dy
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