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NFDI4BioDiversity - A Consortium for the National Research Data Infrastructure (NFDI)
2020
Zenodo
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23 use cases with community-driven topics and cross-domain user groups. ...
The FAIR data principles provide a framework towards such integration. ...
The German Network for Bioinformatics Infrastructure (de.NBI) community The German Network for Bioinformatics Infrastructure (de.NBI) [34] is a dynamic and distributed bioinformatics infrastructure, which ...
doi:10.5281/zenodo.3943644
fatcat:lltfs5w6y5hn3ixe5bw2sitoa4
DataPLANT - NFDI Consortium for Fundamental Plant Research
2021
Zenodo
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The FAIR Data and Linked Open Data Principles provide critical guidelines for RDM. ...
Therefore, comprehensive information on the required quality for use by third parties is rarely available. ...
He is also operating
the de.NBI Cloud Tübingen, a compute and storage environment for bioinformatics research as
part of the German Network for Bioinformatics Infrastructure. ...
doi:10.5281/zenodo.4836394
fatcat:ru7a4tmlxbcetibyryofsdx52i
Digital services for science – where is the journey heading?
[article]
2021
Zenodo
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them fully available for use. ...
used by stakeholders in research and science. ...
One successful example is de.NBI (German Network for Bioinformatics Infrastructure) platform, which has been funded by the BMBF since 2013. ...
doi:10.5281/zenodo.4301946
fatcat:waha7fedmnbzfktd4jbftv7hse
NFDI4Chem - Towards a National Research Data Infrastructure for Chemistry in Germany
2020
Research Ideas and Outcomes
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Key Objective 4: Engage with the chemistry community in Germany through a wide range of measures to create awareness for and foster the adoption of FAIR data management. ...
Key Objective 3: Foster cultural and digital change towards Smart Laboratory Environments by promoting the use of digital tools in all stages of research and promote subsequent Research Data Management ...
PhenoMeNal on computational metabolomics, is PI in the BMBF funded MASH which is part of the german Network of Bioinformatics infrastructures (de.NBI). ...
doi:10.3897/rio.6.e55852
fatcat:fvde2vhzyfc27ieavgkzjhxlaa
In silico design of ligand triggered RNA switches
[article]
2018
bioRxiv
pre-print
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We exemplify the principles using the well known theophylline aptamer throughout this work. ...
We elucidate a commonly used design process by explicitly dissecting and explaining the necessary steps in detail. ...
Bioinformatics Infrastructure (de.NBI) by the German Federal Ministry of Education and Research (BMBF; support code 031A538B), and by the German Research Foundation (DFG; grant STA 850/15-2)
The frequency ...
doi:10.1101/245464
fatcat:kq7e4xgswnfpdlaypyxmo5zcdu
Proceedings of the 5th bwHPC Symposium
[article]
2019
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Additionally, the symposium served as a platform for discussing and exchanging ideas concerning the use of these large scientific infrastructures as well as its further development. ...
In modern science, the demand for more powerful and integrated research infrastructures is growing constantly to address computational challenges in data analysis, modeling and simulation. ...
Lode for their help regarding the implementation of the SGF algorithm and Mctdhx method, respectively. We also thank T. Roscilde for his contribution in the development of the GMC method. ...
doi:10.15496/publikation-29062
fatcat:rtffnd5u6zeoxaezoijeyv4ldy
Proceedings of the 4th bwHPC Symposium
2018
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It focused on the presentation of scientific computing projects as well as on the progress and the success stories of the bwHPC realization concept. ...
The event offered a unique opportunity to engage in an active dialogue between scientific users, operators of bwHPC sites, and the bwHPC support team. ...
The plots in this publication have been made by the use of the matplotlib package by [3]. ...
doi:10.15496/publikation-25195
fatcat:ravolyw3bbatzfl4uy44aa5dp4
ganon: precise metagenomics classification against large and up-to-date sets of reference sequences
2020
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With the same dataset against the complete RefSeq, ganon improved the F1-score by 65% at the genus level. ...
However, currently available methods struggle to manage the increasing amount of sequences and their frequent updates. ...
NBI Cloud within the German Network for Bioinformatics Infrastructure (de.NBI) [031A537B, 031A533A, 031A538A, 031A533B, 031A535A, 031A537C, 031A534A and 031A532B]. ...
doi:10.17169/refubium-28766
fatcat:i7sqkynwhva7vkv5sbsmpvl6gq