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ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources

A. Siepel, A. Farmer, A. Tolopko, M. Zhuang, P. Mendes, W. Beavis, B. Sobral
2001 Bioinformatics  
Motivation: Heterogeneity of databases and software resources continues to hamper the integration of biological information.  ...  Results: We present a component-based approach that relies on a generalized platform for component integration.  ...  use cases, to Harry Mangalam for critical reading of the manuscript, and to Stephen Joseph and the NCGR for funding and general support.  ... 
doi:10.1093/bioinformatics/17.1.83 pmid:11222265 fatcat:yiqxnsvsazh3zeksbvxttfk2di

An integration platform for heterogeneous bioinformatics software components

A. C. Siepel, A. N. Tolopko, A. D. Farmer, P. A. Steadman, F. D. Schilkey, B. D. Perry, W. D. Beavis
2001 IBM Systems Journal  
In this paper, we describe an approach to the problem of integration of heterogeneous bioinformatics resources that relies on a generalized software platform, written in the Java TM language, that we call  ...  The problem of integrating heterogeneous software is of immense importance to the field, especially because a rapid pace of change and a general scarcity of development resources discourage re-engineering  ...  to make the project possible; and to the National Center for Genome Resources for funding and support.  ... 
doi:10.1147/sj.402.0570 fatcat:nxtwkjfzfnburjvihwgqtfjrzy

Dynamic integration of biological data sources using the data concierge

Peng Gong
2013 Health Information Science and Systems  
Methods: To address this challenge, in this paper we propose a new semantics-based adaptive middleware, the Data Concierge, which is able to dynamically integrate heterogeneous biological data sources  ...  The ever-changing landscape of large-scale network environments and innovative biology technologies require dynamic mechanisms to rapidly integrate previously unknown bioinformatics sources at runtime.  ...  The author also would like to express his gratitude to the Department of PET and Nuclear Medicine, RPA hospital for the supports and research facilities.  ... 
doi:10.1186/2047-2501-1-7 pmid:25825659 pmcid:PMC4340781 fatcat:wbzigvv3wfaghb4hkpkkyzxqda

Artificial Intelligence Enabled Wireless Networking for 5G and Beyond: Recent Advances and Future Challenges [article]

Cheng-Xiang Wang, Marco Di Renzo, Slawomir Stańczak, Sen Wang and Erik G. Larsson
2020 arXiv   pre-print
of data that need to be dealt with in B5G.  ...  We first provide a comprehensive survey of recent advances and future challenges that result from bringing AI/ML technologies into B5G wireless networks.  ...  From Model-based to Data-driven Optimization of UDNs The current approach to the management and optimization of cellular networks is based on "models".  ... 
arXiv:2001.08159v1 fatcat:r4dx7v72e5devg3f5e5kchvnpq

Plug-and-play macroscopes

Katy Börner
2011 Communications of the ACM  
Interactive Science Map of NIH Funding Herr II, Bruce W., Talley, Edmund M, Burns, Gully APC, Newman, David & La Rowe, Gavin. (2009  ...  TEXTrend (http://www.textrend.org) lead by George Kampis, Eötvös University, Hungary develops a framework for the easy and flexible integration, configuration, and extension of p y g , g , plugin-based  ...  It helps pool resources, supports interoperability, but also eases the migration from research code to production code and hence the transfer of the migration from research code to production code and  ... 
doi:10.1145/1897852.1897871 fatcat:5cj4axgbgzfpha7c2kn4ehvfhu

Reliable and Scalable SARS-CoV-2 qPCR Testing at a High Sample Throughput: Lessons Learned from the Belgian Initiative

Steven Van Vooren, James Grayson, Marc Van Ranst, Elisabeth Dequeker, Lies Laenen, Reile Janssen, Laurent Gillet, Fabrice Bureau, Wouter Coppieters, Nathalie Devos, Benjamin Hengchen, Pierre Wattiau (+24 others)
2022 Life  
, high-volume, high-confidence workflow based on heterogeneous instrumentation and diverse assays, assay components, and protocols.  ...  Under auspices of a federal government Task Force responsible for upscaling the country's testing capacity, we were able to set up a national testing initiative with readily available resources, putting  ...  Nathalie Devos, Benjamin Hengchen, Pierre Wattiau, and Sibylle Mehauden are employees of the GSK group of companies. The authors declare no further conflict of interest.  ... 
doi:10.3390/life12020159 pmid:35207446 pmcid:PMC8879918 fatcat:li3fff3zjrga7jyfblj5fkp7mu

An extensible automated protein annotation tool: standardizing input and output using validated XML

S. V. V. Deevi, A. C. R. Martin
2005 Bioinformatics  
With this in mind, XML DTDs have been designed to store the input and output of any server. Plug-in wrappers to a number of services have been written which are called from a master script.  ...  Motivation: There is a frequent need to apply a large range of local or remote prediction and annotation tools to one or more sequences.  ...  Other attempts to integrate heterogeneous resources include ISYS and Biopipe. ISYS (Siepel et al., 2001 ) uses a decentralized, component-based approach with a design similar to CORBA and SOAP/WSDL.  ... 
doi:10.1093/bioinformatics/bti808 pmid:16339285 fatcat:nc2vza4j7bf2tmepkm3eueg4j4

A survey of the first 20 years of research on semantic Web and linked data

Fabien GANDON
2018 Ingénierie des Systèmes d'Information  
This paper is a survey of the research topics in the field of Semantic Web, Linked Data and Web of Data.  ...  Compiling several bibliographical sources and bibliometric indicators, we identify the main research trends and we reference some of their major publications to provide an overview of that initial period  ...  Acknowledgements To Mylène Leitzelman for her independent bibliometric validation of the topics and articles.  ... 
doi:10.3166/isi.23.3-4.11-38 fatcat:zsuc34fo5fh3tbz56rlrf72rii

From social simulation to integrative system design

D. Helbing, S. Balietti
2011 The European Physical Journal Special Topics  
The Centers belonging to this network of Integrative Systems Design Centers would be focused on a particular field, but they would be part of an attempt to eventually cover all relevant areas of society  ...  effects for a number of model variants, and determine the reliability of their implications (given the validity of the underlying models).  ...  This approach would facilitate the integration of different kinds of data (e.g. demographic, socio-economic, and geographic data) and different kinds of simulation approaches (e.g. agent-based and continuous  ... 
doi:10.1140/epjst/e2011-01402-7 fatcat:zolchmuenzeglh2c2keblytdjy

Page 570 of IBM Systems Journal Vol. 40, Issue 2 [page]

IBM Systems Journal  
In this paper, we describe an approach to the problem of integration of heterogeneous bioinformatics resources that relies on a generalized software platform, written in the Java™ language, that we call  ...  The problem of integrating heterogeneous software is of immense importance to the field, especially because a rapid pace of change and a general scarcity of development resources discourage re-engineering  ... 

Sponsors and Supporters

2015 2015 IEEE/ACM 7th International Workshop on Modeling in Software Engineering  
Acknowledgements We would like to thank the anonymous reviewer who suggested integrating the ideas of Rogers [6] into the paper. Acknowledgements The author would like to thank Mr.  ...  Fan Yan for the helpfulness to English grammar. A special thank to Dr. Dong Yuan at Department of Computer Science and Technology, Tsinghua University for exchanging the viewpoints.  ...  In a world in which a distributed system is made of tens of heterogeneous components, and expert programmers often work for months to install and configure a distributed application, a new approach is  ... 
doi:10.1109/mise.2015.7 fatcat:vroz3iskmbg4xp7kmxdm74wcjy

Sponsors and Supporters

2015 2015 IEEE/ACM 4th International Workshop on Realizing Artificial Intelligence Synergies in Software Engineering  
Acknowledgements We would like to thank the anonymous reviewer who suggested integrating the ideas of Rogers [6] into the paper. Acknowledgements The author would like to thank Mr.  ...  Fan Yan for the helpfulness to English grammar. A special thank to Dr. Dong Yuan at Department of Computer Science and Technology, Tsinghua University for exchanging the viewpoints.  ...  In a world in which a distributed system is made of tens of heterogeneous components, and expert programmers often work for months to install and configure a distributed application, a new approach is  ... 
doi:10.1109/raise.2015.7 fatcat:l3ie5zayxjgs7oiv7eklxvjsvm

Sponsors and supporters

2015 2015 IEEE/ACM 7th International Workshop on Principles of Engineering Service-Oriented and Cloud Systems  
Acknowledgements We would like to thank the anonymous reviewer who suggested integrating the ideas of Rogers [6] into the paper. Acknowledgements The author would like to thank Mr.  ...  Fan Yan for the helpfulness to English grammar. A special thank to Dr. Dong Yuan at Department of Computer Science and Technology, Tsinghua University for exchanging the viewpoints.  ...  In a world in which a distributed system is made of tens of heterogeneous components, and expert programmers often work for months to install and configure a distributed application, a new approach is  ... 
doi:10.1109/pesos.2015.7 fatcat:vgtzzfevlrd6fla2434a5te27y

Sponsors and Supporters

2015 2015 IEEE 28th Conference on Software Engineering Education and Training  
Acknowledgements We would like to thank the anonymous reviewer who suggested integrating the ideas of Rogers [6] into the paper. Acknowledgements The author would like to thank Mr.  ...  Fan Yan for the helpfulness to English grammar. A special thank to Dr. Dong Yuan at Department of Computer Science and Technology, Tsinghua University for exchanging the viewpoints.  ...  In a world in which a distributed system is made of tens of heterogeneous components, and expert programmers often work for months to install and configure a distributed application, a new approach is  ... 
doi:10.1109/cseet.2015.6 fatcat:thqwoz5mivcuhg73hmergrtl7y

Sponsors and Supporters

2015 2015 IEEE/ACM 5th International Workshop on the Twin Peaks of Requirements and Architecture  
Acknowledgements We would like to thank the anonymous reviewer who suggested integrating the ideas of Rogers [6] into the paper. Acknowledgements The author would like to thank Mr.  ...  Fan Yan for the helpfulness to English grammar. A special thank to Dr. Dong Yuan at Department of Computer Science and Technology, Tsinghua University for exchanging the viewpoints.  ...  In a world in which a distributed system is made of tens of heterogeneous components, and expert programmers often work for months to install and configure a distributed application, a new approach is  ... 
doi:10.1109/twinpeaks.2015.7 fatcat:rnnzjpz5hzbyhj2m4xmrlxnpya
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