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IMGT-ONTOLOGY for immunogenetics and immunoinformatics
2003
In Silico Biology
tools for sequence analysis (IMGT/V-QUEST, IMGT/JunctionAnalysis, IMGT/PhyloGene, IMGT/Allele-Align), for genome analysis (IMGT/GeneSearch, IMGT/GeneView, IMGT/LocusView) and for 3D structure analysis ...
IMGT, the international ImMunoGeneTics information system(R) (http://imgt.cines.fr), is a high quality integrated knowledge resource specializing in immunoglobulins (IG), T cell receptors (TR), major histocompatibility ...
We are deeply grateful to the IMGT team for its expertise and constant motivation and specially to our curators for their hard work and enthusiasm. ...
pmid:15089751
fatcat:7dswqqx3vvhtjmd4fbhyh4lfg4
IMGT-ONTOLOGY and IMGT databases, tools and Web resources for immunogenetics and immunoinformatics
2004
Molecular Immunology
analysis (IMGT/V-QUEST, IMGT/JunctionAnalysis, IMGT/PhyloGene, IMGT/Allele-Align), for genome analysis (IMGT/GeneSearch, IMGT/GeneView, IMGT/LocusView) and for 3D structure analysis (IMGT/StructuralQuery ...
IMGT consists of several sequence databases (IMGT/LIGM-DB, IMGT/MHC-DB, IMGT/PRIMER-DB), one genome database (IMGT/GENE-DB) and one 3D structure database (IMGT/3Dstructure-DB), interactive tools for sequence ...
Acknowledgements I am deeply grateful to the IMGT team for its hard work, expertise, constant motivation and enthusiasm. ...
doi:10.1016/j.molimm.2003.09.006
pmid:14644091
fatcat:3pcslonq4zawjnygo5skyiixpu
Immunogenetic sequence annotation based on IMGT-ONTOLOGY
2009
Nature Precedings
The expert annotation of these sequences and the added standardized knowledge are based on IMGT-ONTOLOGY, the first ontology developed in the field of immunogenetics and immunoinformatics [3]. ...
There are more than 590 IMGT standardized labels from which 64 have been entered in Sequence Ontology (SO). ...
IMGT®, the international ImMunoGeneTics information system® (http://www.imgt.org) is based on IMGT-ONTOLOGY, the first ontology for immunogenetics and immunoinformatics [1] . ...
doi:10.1038/npre.2009.3165.1
fatcat:4dtmiolo45hsvhy5lwwdecgbyi
IMGT(R), the international ImMunoGeneTics information system(R)
2009
Nucleic Acids Research
The building of a unique ontology, IMGT-ONTOLOGY, has made IMGT Õ the global reference in immunogenetics and immunoinformatics. ...
IMGT Õ consists of five databases (IMGT/ LIGM-DB, IMGT/GENE-DB, IMGT/3Dstructure-DB, etc.), fifteen interactive online tools for sequence, genome and 3D structure analysis, and more than 10 000 HTML pages ...
ACKNOWLEDGEMENTS We thank all the IMGT Õ users from academic and industrial laboratories and the clinicians and scientists from the European Research Initiative on CLL who help promoting standardization ...
doi:10.1093/nar/gkn838
pmid:18978023
pmcid:PMC2686541
fatcat:3is6vdinlbfyvjfnztqb22t7ha
IMGT-Choreography for immunogenetics and immunoinformatics
2005
In Silico Biology
The accuracy and the consistency of IMGT data are based on IMGT-ONTOLOGY, a semantic specification of terms to be used in immunogenetics and immunoinformatics. ...
IMGT-Choreography will further increase the IMGT leadership in immunogenetics and immunoinformatics for medical research (repertoire analysis of the IG antibody sites and of the TR recognition sites in ...
ACKNOWLEDGEMENTS We are grateful to Mehdi Yousfi Monod, Joumana Jabado-Michaloud and Vincent Negre for helpful discussion. ...
pmid:15972004
fatcat:66kgcezv6zh5vmtfyuhma4ebeq
IMGT®, the international ImMunoGeneTics information system® 25 years on
2014
Nucleic Acids Research
IMGT R , the international ImMunoGeneTics information system R (http://www.imgt.org) is the global reference in immunogenetics and immunoinformatics. ...
IMGT R is built on the IMGT-ONTOLOGY axioms and concepts, which bridged the gap between genes, sequences and 3D structures. ...
ACKNOWLEDGEMENTS We are grateful to all the previous members of the IMGT R team, for their expertise and constant motivation. ...
doi:10.1093/nar/gku1056
pmid:25378316
pmcid:PMC4383898
fatcat:q5x3oufdlvggrjrpwoqge7tehq
IMGT, the international ImMunoGeneTics information system: a standardized approach for immunogenetics and immunoinformatics
2005
Immunome Research
The accuracy and the consistency of IMGT data are based on IMGT-ONTOLOGY, a semantic specification of terms to be used in immunogenetics and immunoinformatics. ...
IMGT is the international reference in immunogenetics and immunoinformatics for medical research (repertoire analysis of the IG antibody sites and of the TR recognition sites in autoimmune and infectious ...
reference in immunogenetics and immunoinformatics. ...
doi:10.1186/1745-7580-1-3
pmid:16305737
pmcid:PMC1312312
fatcat:6hkqzcde6bcvjgvgeosbpel2k4
WHO-IUIS Nomenclature Subcommittee for immunoglobulins and T cell receptors report
2007
Immunogenetics
These rules are based on the concepts of IMGT-ONTOLOGY [2, 3] , the first ontology in immunogenetics and immunoinformatics. ...
These combined efforts contributed to make IMGT s , the international ImMunoGeneTics information system s , http://imgt. cines.fr, the global reference in immunogenetics and immunoinformatics. ...
doi:10.1007/s00251-007-0260-4
pmid:18046549
fatcat:zj67ht2k6zgzbbqwghq4ios6hm
IMGT, the international ImMunoGeneTics information system(R)
2004
Nucleic Acids Research
IMGT data are expertly annotated according to the rules of the IMGT Scientific chart, based on the IMGT-ONTOLOGY concepts. ...
IMGT tools are particularly useful for the analysis of the IG and TR repertoires in normal physiological and pathological situations. ...
ontology in the domain, which provides a semantic specification of the terms to be used in immunogenetics and immunoinformatics, and thus, allows the management of immunogenetics knowledge for all vertebrate ...
doi:10.1093/nar/gki065
pmid:15608269
pmcid:PMC540019
fatcat:7bh7zpn4lna43ehvgy5avusgvu
WHO-IUIS Nomenclature Subcommittee for immunoglobulins and T cell receptors report
2008
Developmental and Comparative Immunology
These rules are based on the concepts of IMGT-ONTOLOGY [2, 3] , the first ontology in immunogenetics and immunoinformatics. ...
These combined efforts contributed to make IMGT s , the international ImMunoGeneTics information system s , http://imgt. cines.fr, the global reference in immunogenetics and immunoinformatics. ...
doi:10.1016/j.dci.2007.09.008
pmid:18036660
fatcat:tbs5vfyb5zcwtcj7bsve5ugtby
Antibody nomenclature
2011
mAbs
ImMunoGeneTics information system ® (www.imgt.org) and is now acknowledged as the global reference in immunogenetics and immunoinformatics. 2 IMGT-ONTOLOGY manages the immunogenetics knowledge through ...
IMGT-ONTOLOGY was created to manage the complexity of immunogenetics knowledge and was the first ontology in the domain. 1 IMGT-ONTOLOGY has been essential for the creation in 1989 of IMGT ® , the international ...
doi:10.4161/mabs.3.1.14151
pmid:21099347
pmcid:PMC3038005
fatcat:orl6ey3mijat3p5225ub3nwdoq
IMGT, a system and an ontology that bridge biological and computational spheres in bioinformatics
2008
Briefings in Bioinformatics
The accuracy and consistency of IMGT data and the coherence between the different IMGT components (databases, tools and Web resources) are based on IMGT-ONTOLOGY, the first ontology for immunogenetics ...
IMGT Õ , the international ImMunoGeneTics information system (http://imgt.cines.fr), is the reference in immunogenetics and immunoinformatics. ...
Acknowledgements We thank Chantal Ginestoux for the figures. We are grateful to Gérard Lefranc for helpful discussion and to the IMGT team for its expertise and constant motivation. ...
doi:10.1093/bib/bbn014
pmid:18424816
fatcat:f7v5svwpenearmyeueb2jhmbbe
IMGT-Kaleidoscope, the formal IMGT-ONTOLOGY paradigm
2008
Biochimie
The accuracy and consistency of IMGT data and the coherence between the different IMGT components (databases, tools and Web resources) are based on IMGT-ONTOLOGY, the first ontology for immunogenetics ...
IMGT Ò , the international ImMunoGeneTics information system Ò (http://imgt.cines.fr), is the reference in immunogenetics and immunoinformatics. ...
Acknowledgements We are grateful to Gérard Lefranc for helpful discussion and to the IMGT Ò team for its constant motivation and its expertise. IMGT Ò was funded by the Centre National de la Re- ...
doi:10.1016/j.biochi.2007.09.003
pmid:17949886
fatcat:epwhbxlop5fgddmsv2zaunirle
IMGT-ONTOLOGY 2012
2012
Frontiers in Genetics
for the formal representation of knowledge in immunogenetics and immunoinformatics. ...
IMGT-ONTOLOGY has become the global reference in immunogenetics and immunoinformatics for the knowledge representation of immunoglobulins (IG) or antibodies, T cell receptors (TR), and major histocompatibility ...
ACKNOWLEDGMENTS We are grateful to Gérard Lefranc for helpful comments. We thank the IMGT® team, and all the previous collaborators and biocurators for the expertise and constant motivation. ...
doi:10.3389/fgene.2012.00079
pmid:22654892
pmcid:PMC3358611
fatcat:o7ny6ofyq5amjhko6z45wvbudq
From IMGT-ONTOLOGY to IMGT/HighVQUEST for NGS Immunoglobulin (IG) and T cell Receptor (TR) Repertoires in Autoimmune and Infectious Diseases
2015
Autoimmune and Infectious Diseases Open Access
IMGT ® , the international ImMunoGeneTics information system ® (Centre National de la Recherche Scientifique and Montpellier University) is the global reference in immunogenetics and immunoinformatics. ...
By its creation in 1989, IMGT ® marked the advent of immunoinformatics, which emerged at the interface between immunogenetics and bioinformatics. ...
their expertise and constant motivation, Gérard Lefranc for his helpful comments, and all the previous members of the IMGT® team, for their invaluable contribution. ...
doi:10.16966/2470-1025.103
fatcat:fvfpxkbe2jbyvg5w6thbw2n5xm
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