Filters








55 Hits in 1.6 sec

IMGT-ONTOLOGY for immunogenetics and immunoinformatics

Marie-Paule Lefranc, Véronique Giudicelli, Chantal Ginestoux, Nathalie Bosc, Géraldine Folch, Delphine Guiraudou, Joumana Jabado-Michaloud, Séverine Magris, Dominique Scaviner, Valérie Thouvenin, Kora Combres, David Girod (+8 others)
2003 In Silico Biology  
tools for sequence analysis (IMGT/V-QUEST, IMGT/JunctionAnalysis, IMGT/PhyloGene, IMGT/Allele-Align), for genome analysis (IMGT/GeneSearch, IMGT/GeneView, IMGT/LocusView) and for 3D structure analysis  ...  IMGT, the international ImMunoGeneTics information system(R) (http://imgt.cines.fr), is a high quality integrated knowledge resource specializing in immunoglobulins (IG), T cell receptors (TR), major histocompatibility  ...  We are deeply grateful to the IMGT team for its expertise and constant motivation and specially to our curators for their hard work and enthusiasm.  ... 
pmid:15089751 fatcat:7dswqqx3vvhtjmd4fbhyh4lfg4

IMGT-ONTOLOGY and IMGT databases, tools and Web resources for immunogenetics and immunoinformatics

Marie-Paule Lefranc
2004 Molecular Immunology  
analysis (IMGT/V-QUEST, IMGT/JunctionAnalysis, IMGT/PhyloGene, IMGT/Allele-Align), for genome analysis (IMGT/GeneSearch, IMGT/GeneView, IMGT/LocusView) and for 3D structure analysis (IMGT/StructuralQuery  ...  IMGT consists of several sequence databases (IMGT/LIGM-DB, IMGT/MHC-DB, IMGT/PRIMER-DB), one genome database (IMGT/GENE-DB) and one 3D structure database (IMGT/3Dstructure-DB), interactive tools for sequence  ...  Acknowledgements I am deeply grateful to the IMGT team for its hard work, expertise, constant motivation and enthusiasm.  ... 
doi:10.1016/j.molimm.2003.09.006 pmid:14644091 fatcat:3pcslonq4zawjnygo5skyiixpu

Immunogenetic sequence annotation based on IMGT-ONTOLOGY

Joumana Jabado-Michaloud, Marie-Paule Lefranc, Géraldine Folch, Fatena Bellahcene, François Ehrenmann, Patrice Duroux, Véronique Giudicelli
2009 Nature Precedings  
The expert annotation of these sequences and the added standardized knowledge are based on IMGT-ONTOLOGY, the first ontology developed in the field of immunogenetics and immunoinformatics [3].  ...  There are more than 590 IMGT standardized labels from which 64 have been entered in Sequence Ontology (SO).  ...  IMGT®, the international ImMunoGeneTics information system® (http://www.imgt.org) is based on IMGT-ONTOLOGY, the first ontology for immunogenetics and immunoinformatics [1] .  ... 
doi:10.1038/npre.2009.3165.1 fatcat:4dtmiolo45hsvhy5lwwdecgbyi

IMGT(R), the international ImMunoGeneTics information system(R)

M.-P. Lefranc, V. Giudicelli, C. Ginestoux, J. Jabado-Michaloud, G. Folch, F. Bellahcene, Y. Wu, E. Gemrot, X. Brochet, J. Lane, L. Regnier, F. Ehrenmann (+2 others)
2009 Nucleic Acids Research  
The building of a unique ontology, IMGT-ONTOLOGY, has made IMGT Õ the global reference in immunogenetics and immunoinformatics.  ...  IMGT Õ consists of five databases (IMGT/ LIGM-DB, IMGT/GENE-DB, IMGT/3Dstructure-DB, etc.), fifteen interactive online tools for sequence, genome and 3D structure analysis, and more than 10 000 HTML pages  ...  ACKNOWLEDGEMENTS We thank all the IMGT Õ users from academic and industrial laboratories and the clinicians and scientists from the European Research Initiative on CLL who help promoting standardization  ... 
doi:10.1093/nar/gkn838 pmid:18978023 pmcid:PMC2686541 fatcat:3is6vdinlbfyvjfnztqb22t7ha

IMGT-Choreography for immunogenetics and immunoinformatics

Marie-Paule Lefranc, Oliver Clement, Quentin Kaas, Elodie Duprat, Patrick Chastellan, Isabelle Coelho, Kora Combres, Chantal Ginestoux, Veronique Giudicelli, Denys Chaume, Gerard Lefranc
2005 In Silico Biology  
The accuracy and the consistency of IMGT data are based on IMGT-ONTOLOGY, a semantic specification of terms to be used in immunogenetics and immunoinformatics.  ...  IMGT-Choreography will further increase the IMGT leadership in immunogenetics and immunoinformatics for medical research (repertoire analysis of the IG antibody sites and of the TR recognition sites in  ...  ACKNOWLEDGEMENTS We are grateful to Mehdi Yousfi Monod, Joumana Jabado-Michaloud and Vincent Negre for helpful discussion.  ... 
pmid:15972004 fatcat:66kgcezv6zh5vmtfyuhma4ebeq

IMGT®, the international ImMunoGeneTics information system® 25 years on

Marie-Paule Lefranc, Véronique Giudicelli, Patrice Duroux, Joumana Jabado-Michaloud, Géraldine Folch, Safa Aouinti, Emilie Carillon, Hugo Duvergey, Amélie Houles, Typhaine Paysan-Lafosse, Saida Hadi-Saljoqi, Souphatta Sasorith (+2 others)
2014 Nucleic Acids Research  
IMGT R , the international ImMunoGeneTics information system R (http://www.imgt.org) is the global reference in immunogenetics and immunoinformatics.  ...  IMGT R is built on the IMGT-ONTOLOGY axioms and concepts, which bridged the gap between genes, sequences and 3D structures.  ...  ACKNOWLEDGEMENTS We are grateful to all the previous members of the IMGT R team, for their expertise and constant motivation.  ... 
doi:10.1093/nar/gku1056 pmid:25378316 pmcid:PMC4383898 fatcat:q5x3oufdlvggrjrpwoqge7tehq

IMGT, the international ImMunoGeneTics information system: a standardized approach for immunogenetics and immunoinformatics

Marie-Paule Lefranc
2005 Immunome Research  
The accuracy and the consistency of IMGT data are based on IMGT-ONTOLOGY, a semantic specification of terms to be used in immunogenetics and immunoinformatics.  ...  IMGT is the international reference in immunogenetics and immunoinformatics for medical research (repertoire analysis of the IG antibody sites and of the TR recognition sites in autoimmune and infectious  ...  reference in immunogenetics and immunoinformatics.  ... 
doi:10.1186/1745-7580-1-3 pmid:16305737 pmcid:PMC1312312 fatcat:6hkqzcde6bcvjgvgeosbpel2k4

WHO-IUIS Nomenclature Subcommittee for immunoglobulins and T cell receptors report

Marie-Paule Lefranc
2007 Immunogenetics  
These rules are based on the concepts of IMGT-ONTOLOGY [2, 3] , the first ontology in immunogenetics and immunoinformatics.  ...  These combined efforts contributed to make IMGT s , the international ImMunoGeneTics information system s , http://imgt. cines.fr, the global reference in immunogenetics and immunoinformatics.  ... 
doi:10.1007/s00251-007-0260-4 pmid:18046549 fatcat:zj67ht2k6zgzbbqwghq4ios6hm

IMGT, the international ImMunoGeneTics information system(R)

M.-P. Lefranc
2004 Nucleic Acids Research  
IMGT data are expertly annotated according to the rules of the IMGT Scientific chart, based on the IMGT-ONTOLOGY concepts.  ...  IMGT tools are particularly useful for the analysis of the IG and TR repertoires in normal physiological and pathological situations.  ...  ontology in the domain, which provides a semantic specification of the terms to be used in immunogenetics and immunoinformatics, and thus, allows the management of immunogenetics knowledge for all vertebrate  ... 
doi:10.1093/nar/gki065 pmid:15608269 pmcid:PMC540019 fatcat:7bh7zpn4lna43ehvgy5avusgvu

WHO-IUIS Nomenclature Subcommittee for immunoglobulins and T cell receptors report

Marie-Paule Lefranc
2008 Developmental and Comparative Immunology  
These rules are based on the concepts of IMGT-ONTOLOGY [2, 3] , the first ontology in immunogenetics and immunoinformatics.  ...  These combined efforts contributed to make IMGT s , the international ImMunoGeneTics information system s , http://imgt. cines.fr, the global reference in immunogenetics and immunoinformatics.  ... 
doi:10.1016/j.dci.2007.09.008 pmid:18036660 fatcat:tbs5vfyb5zcwtcj7bsve5ugtby

Antibody nomenclature

Marie-Paule Lefranc
2011 mAbs  
ImMunoGeneTics information system ® (www.imgt.org) and is now acknowledged as the global reference in immunogenetics and immunoinformatics. 2 IMGT-ONTOLOGY manages the immunogenetics knowledge through  ...  IMGT-ONTOLOGY was created to manage the complexity of immunogenetics knowledge and was the first ontology in the domain. 1 IMGT-ONTOLOGY has been essential for the creation in 1989 of IMGT ® , the international  ... 
doi:10.4161/mabs.3.1.14151 pmid:21099347 pmcid:PMC3038005 fatcat:orl6ey3mijat3p5225ub3nwdoq

IMGT, a system and an ontology that bridge biological and computational spheres in bioinformatics

M.-P. Lefranc, V. Giudicelli, L. Regnier, P. Duroux
2008 Briefings in Bioinformatics  
The accuracy and consistency of IMGT data and the coherence between the different IMGT components (databases, tools and Web resources) are based on IMGT-ONTOLOGY, the first ontology for immunogenetics  ...  IMGT Õ , the international ImMunoGeneTics information system (http://imgt.cines.fr), is the reference in immunogenetics and immunoinformatics.  ...  Acknowledgements We thank Chantal Ginestoux for the figures. We are grateful to Gérard Lefranc for helpful discussion and to the IMGT team for its expertise and constant motivation.  ... 
doi:10.1093/bib/bbn014 pmid:18424816 fatcat:f7v5svwpenearmyeueb2jhmbbe

IMGT-Kaleidoscope, the formal IMGT-ONTOLOGY paradigm

Patrice Duroux, Quentin Kaas, Xavier Brochet, Jérôme Lane, Chantal Ginestoux, Marie-Paule Lefranc, Véronique Giudicelli
2008 Biochimie  
The accuracy and consistency of IMGT data and the coherence between the different IMGT components (databases, tools and Web resources) are based on IMGT-ONTOLOGY, the first ontology for immunogenetics  ...  IMGT Ò , the international ImMunoGeneTics information system Ò (http://imgt.cines.fr), is the reference in immunogenetics and immunoinformatics.  ...  Acknowledgements We are grateful to Gérard Lefranc for helpful discussion and to the IMGT Ò team for its constant motivation and its expertise. IMGT Ò was funded by the Centre National de la Re-  ... 
doi:10.1016/j.biochi.2007.09.003 pmid:17949886 fatcat:epwhbxlop5fgddmsv2zaunirle

IMGT-ONTOLOGY 2012

Véronique Giudicelli, Marie-Paule Lefranc
2012 Frontiers in Genetics  
for the formal representation of knowledge in immunogenetics and immunoinformatics.  ...  IMGT-ONTOLOGY has become the global reference in immunogenetics and immunoinformatics for the knowledge representation of immunoglobulins (IG) or antibodies, T cell receptors (TR), and major histocompatibility  ...  ACKNOWLEDGMENTS We are grateful to Gérard Lefranc for helpful comments. We thank the IMGT® team, and all the previous collaborators and biocurators for the expertise and constant motivation.  ... 
doi:10.3389/fgene.2012.00079 pmid:22654892 pmcid:PMC3358611 fatcat:o7ny6ofyq5amjhko6z45wvbudq

From IMGT-ONTOLOGY to IMGT/HighVQUEST for NGS Immunoglobulin (IG) and T cell Receptor (TR) Repertoires in Autoimmune and Infectious Diseases

Giudicelli V
2015 Autoimmune and Infectious Diseases Open Access  
IMGT ® , the international ImMunoGeneTics information system ® (Centre National de la Recherche Scientifique and Montpellier University) is the global reference in immunogenetics and immunoinformatics.  ...  By its creation in 1989, IMGT ® marked the advent of immunoinformatics, which emerged at the interface between immunogenetics and bioinformatics.  ...  their expertise and constant motivation, Gérard Lefranc for his helpful comments, and all the previous members of the IMGT® team, for their invaluable contribution.  ... 
doi:10.16966/2470-1025.103 fatcat:fvfpxkbe2jbyvg5w6thbw2n5xm
« Previous Showing results 1 — 15 out of 55 results