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IEEE/ACM Transactions on Computational Biology and Bioinformatics

2008 IEEE Engineering in Medicine and Biology Magazine  
In this paper, we describe new combinatorial and algorithmical results for computing such scenarios, based on the combinatorial problem of sorting by reversals.  ...  Putative evolution scenarios based on rearrangements were also computed on large datasets of prokaryotic genomes [3], [16].  ...  Research supported by the "60 eme Commission Permanente Franco-Québecoise de Coopération Scientifique", and by grants from NSERC, CNRS and INRA. DRAFT March 8, 2006  ... 
doi:10.1109/memb.2008.927644 fatcat:m5klivxcinal5ppgbtionkzoj4

IEEE/ACM Transactions on Computational Biology and Bioinformatics

2005 IEEE Control Systems  
In this paper, we describe new combinatorial and algorithmical results for computing such scenarios, based on the combinatorial problem of sorting by reversals.  ...  Putative evolution scenarios based on rearrangements were also computed on large datasets of prokaryotic genomes [3], [16].  ...  Research supported by the "60 eme Commission Permanente Franco-Québecoise de Coopération Scientifique", and by grants from NSERC, CNRS and INRA. DRAFT March 8, 2006  ... 
doi:10.1109/mcs.2005.1499386 fatcat:33jvbg4ey5fs3asmaidi5fohha

IEEE ACM Transactions on Computational Biology and Bioinformatics

2014 IEEE Pulse  
In this paper, we describe new combinatorial and algorithmical results for computing such scenarios, based on the combinatorial problem of sorting by reversals.  ...  Putative evolution scenarios based on rearrangements were also computed on large datasets of prokaryotic genomes [3], [16].  ...  Research supported by the "60 eme Commission Permanente Franco-Québecoise de Coopération Scientifique", and by grants from NSERC, CNRS and INRA. DRAFT March 8, 2006  ... 
doi:10.1109/mpul.2014.2316081 fatcat:slhdzjjizbd4vnkg7j6fr3ryva

IEEE/ACM Transactions on Computational Biology and Bioinformatics

2005 IEEE Transactions on Biomedical Engineering  
In this paper, we describe new combinatorial and algorithmical results for computing such scenarios, based on the combinatorial problem of sorting by reversals.  ...  Putative evolution scenarios based on rearrangements were also computed on large datasets of prokaryotic genomes [3], [16].  ...  Research supported by the "60 eme Commission Permanente Franco-Québecoise de Coopération Scientifique", and by grants from NSERC, CNRS and INRA. DRAFT March 8, 2006  ... 
doi:10.1109/tbme.2005.843552 fatcat:icj756y2zvckdaj5dcys6qv6ha

IEEE/ACM Transactions on Computational Biology and Bioinformatics

2005 IEEE Engineering in Medicine and Biology Magazine  
In this paper, we describe new combinatorial and algorithmical results for computing such scenarios, based on the combinatorial problem of sorting by reversals.  ...  Putative evolution scenarios based on rearrangements were also computed on large datasets of prokaryotic genomes [3], [16].  ...  Research supported by the "60 eme Commission Permanente Franco-Québecoise de Coopération Scientifique", and by grants from NSERC, CNRS and INRA. DRAFT March 8, 2006  ... 
doi:10.1109/memb.2005.1411355 fatcat:a7uxabsznbasncscnbyuqlrgw4

IEEE/ACM Transactions on Computational Biology and Bioinformatics

2008 IEEE Transactions on Nanobioscience  
In this paper, we describe new combinatorial and algorithmical results for computing such scenarios, based on the combinatorial problem of sorting by reversals.  ...  Putative evolution scenarios based on rearrangements were also computed on large datasets of prokaryotic genomes [3], [16].  ...  Research supported by the "60 eme Commission Permanente Franco-Québecoise de Coopération Scientifique", and by grants from NSERC, CNRS and INRA. DRAFT March 8, 2006  ... 
doi:10.1109/tnb.2008.919656 fatcat:2mlhr2xhn5ejjfnbtvgkoxre3q

IEEE/ACM Transactions on Computational Biology and Bioinformatics

2008 IEEE Transactions on Biomedical Engineering  
In this paper, we describe new combinatorial and algorithmical results for computing such scenarios, based on the combinatorial problem of sorting by reversals.  ...  Putative evolution scenarios based on rearrangements were also computed on large datasets of prokaryotic genomes [3], [16].  ...  Research supported by the "60 eme Commission Permanente Franco-Québecoise de Coopération Scientifique", and by grants from NSERC, CNRS and INRA. DRAFT March 8, 2006  ... 
doi:10.1109/tbme.2008.918677 fatcat:fliijqps2rcizen62k5ynjkjgy

2020 Index IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 17

2021 IEEE/ACM Transactions on Computational Biology & Bioinformatics  
., +, TCBB May-June 2020 1010-1018 IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS , VOL. 18, NO. 1, JANUARY-FEBRUARY 2021 Learning Multimodal Networks From Heterogeneous Data for Prediction  ...  -Feb. 2020 102-109 Chen, Z., +, TCBB May-June 2020 916-929 Computational biology Algorithms for Computational Biology: Fifth Edition. Martin-Vide, C., +, TCBB Jan.  ... 
doi:10.1109/tcbb.2020.3047571 fatcat:x3kmrpexsve6bnjtd3dh6ntkyy

2021 Index IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 18

2022 IEEE/ACM Transactions on Computational Biology & Bioinformatics  
The primary entry includes the coauthors' names, the title of the paper or other item, and its location, specified by the publication abbreviation, year, month, and inclusive pagination.  ...  The Subject Index contains entries describing the item under all appropriate subject headings, plus the first author's name, the publication abbreviation, month, and year, and inclusive pages.  ...  -Oct. 2021 1730-1732 Computational biology Algorithms for Computational Biology: Sixth Edition. Martin-Vide, C., +, TCBB Jan.  ... 
doi:10.1109/tcbb.2021.3136340 fatcat:bjvb334webfovh4nsc7oeds3di

Multiobjective Optimization in Bioinformatics and Computational Biology

Julia Handl, Douglas B. Kell, Joshua Knowles
2007 IEEE/ACM Transactions on Computational Biology & Bioinformatics  
This paper reviews the application of multiobjective optimization in the fields of bioinformatics and computational biology.  ...  review is the identification of five distinct "contexts," giving rise to multiple objectives: These are used to explain the reasons behind the use of multiobjective optimization in each application area and  ...  Ç INTRODUCTION N UMEROUS problems encountered in bioinformatics and computational biology can be formulated as optimization problems and, thus, lend themselves to the application of powerful heuristic  ... 
doi:10.1109/tcbb.2007.070203 pmid:17473320 fatcat:phhnntgxwbad7mdpcl2fjjx4oe

Guest Editorial: Special Focus on Bioinformatics and Systems Biology

Fang-Xiang Wu, Jun Huan
2011 IEEE/ACM Transactions on Computational Biology & Bioinformatics  
These papers present recent research in bioinformatics and systems biology to make sense from large-scale biological data. In past decades, much attention has been paid to biomedical research.  ...  In this special section, five papers in their significantly extended versions were selected from the papers presented at the IEEE Conference on Bioinformatics and Biomedicine (BIBM), 2009.  ... 
doi:10.1109/tcbb.2011.16 pmid:21298823 fatcat:eo3ki44ckvamfk6fkx52ylshfu

Guest Editor's Introduction to the Special Issue on Computational Biology and Bioinformatics - Part 1

Rita Casadio
2006 IEEE/ACM Transactions on Computational Biology & Bioinformatics  
The paper "Efficient Detection of IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOL. 3, NO. 4, OCTOBER-DECEMBER 2006 321 .  ...  The development of algorithms specifically addressing the most significant problems of computational biology and bioinformatics prompted the selection of the papers published in this special issue and  ... 
doi:10.1109/tcbb.2006.54 fatcat:cwd7yrfyxnhi7mli7jj3r6nu2y

Unicyclic Networks: Compatibility and Enumeration

C. Semple, M. Steel
2006 IEEE/ACM Transactions on Computational Biology & Bioinformatics  
This leads to a triple-wise compatibility theorem, and a simple, fast algorithm to determine 1-cycle compatibility.  ...  Graphs obtained from a binary leaf labelled ('phylogenetic') tree by adding an edge so as to introduce a cycle provide a useful representation of hybrid evolution in molecular evolutionary biology.  ...  The modelling and analysis of reticulate evolution is currently a topical problem in systematic biology and bioinformatics.  ... 
doi:10.1109/tcbb.2006.14 pmid:17048395 fatcat:ogwhc2qpije6xb7mvgblhyctpy

Distorted Metrics on Trees and Phylogenetic Forests

Elchanan Mossel
2007 IEEE/ACM Transactions on Computational Biology & Bioinformatics  
Both the metric result and its applications to phylogeny are almost tight. Abstract We study distorted metrics on binary trees in the context of phylogenetic reconstruction.  ...  Given a binary tree T on n leaves with a path metric d, consider the pairwise distances {d (u, v)} between leaves. It is well known that these determine the tree and the d length of all edges.  ...  However, one of the major goals of systematic biology in the coming decade is to reconstruct phylogenies on millions of species.  ... 
doi:10.1109/tcbb.2007.1010 pmid:17277418 fatcat:ryifd3h52rduziet2z6zoa47dq

Guest Editors' Introduction to the Special Section: Computational Intelligence Approaches in Computational Biology and Bioinformatics

Jagath C. Rajapakse, Yan-Qing Zhang, Gary B. Fogel
2007 IEEE/ACM Transactions on Computational Biology & Bioinformatics  
The papers included in this special section provide a broad perspective on possible applications and it is hoped that these papers will serve as the basis for future application and testing of these approaches  ...  Fifty-one papers were submitted to the special section. The guest editors would like to thank all of the authors and reviewers for their great effort in this regard.  ...  He also serves as an associate editor for the IEEE/ACM Transactions on Computational Biology and Bioinformatics, IEEE Computational Intelligence Magazine, and IEEE Transactions on Evolutionary Computation  ... 
doi:10.1109/tcbb.2007.070201 fatcat:3mdw6hdjlrgubhwg5rdlva7x6y
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