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HYBRID REGISTRATION FOR TWO-DIMENSIONAL GEL PROTEIN IMAGES

XIUYING WANG, DAVID DAGAN FENG
<span title="">2005</span> <i title="PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO."> Proceedings of the 3rd Asia-Pacific Bioinformatics Conference </i> &nbsp;
But due to the elastic deformations of two-dimensional gel protein eletrophoresis images, their registration still remains a challenge.  ...  In this paper, a hybrid 2D gel protein image registration method is proposed.  ...  Image registration techniques are an important tool for the comparison and analysis of two-dimensional protein expression and structure.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1142/9781860947322_0020">doi:10.1142/9781860947322_0020</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ndb2ivnsuzf7rdtsmei2om7k44">fatcat:ndb2ivnsuzf7rdtsmei2om7k44</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20080422164751/http://www.iscs.nus.edu.sg/~wongls/psZ/apbc2005/camera-ready/241.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ff/1a/ff1a34ebcb27afa74b177debfae8eae4efb2123e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1142/9781860947322_0020"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> worldscientific.com </button> </a>

Multiresolution image registration for two-dimensional gel electrophoresis

Stefan Veeser, Michael J. Dunn, Guang-Zhong Yang
<span title="">2001</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/fuys75pzlrec5izxlpab5g6jue" style="color: black;">Proteomics</a> </i> &nbsp;
In proteomic research, two-dimensional electrophoresis (2-D) is an important tool for investigating differential patterns of qualitative and quantitative protein expression.  ...  To satisfy the growing demand for a robust and fully automatic method of matching 2-D gel protein separation profiles, we describe in this paper a novel registration technique based on image intensity  ...  However, two-dimensional polyacrylamide gel electrophoresis (2-DE) remains the core technology of choice for separating complex protein mixtures in the majority of proteome projects [11, 12] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/1615-9861(200107)1:7&lt;856::aid-prot856&gt;3.3.co;2-i">doi:10.1002/1615-9861(200107)1:7&lt;856::aid-prot856&gt;3.3.co;2-i</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11503210">pmid:11503210</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mcdzrfz67nemfctnal3pjkxwfu">fatcat:mcdzrfz67nemfctnal3pjkxwfu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20060903025810/http://stardec.ascc.neu.edu/~bba/BIO3580/SIB.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/5e/88/5e88cce67d76e78e3ce017a8eabf16db85f5f52a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/1615-9861(200107)1:7&lt;856::aid-prot856&gt;3.3.co;2-i"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a>

Multiresolution image registration for two-dimensional gel electrophoresis

Stefan Veeser, Michael J. Dunn, Guang-Zhong Yang
<span title="">2001</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/fuys75pzlrec5izxlpab5g6jue" style="color: black;">Proteomics</a> </i> &nbsp;
In proteomic research, two-dimensional electrophoresis (2-D) is an important tool for investigating differential patterns of qualitative and quantitative protein expression.  ...  To satisfy the growing demand for a robust and fully automatic method of matching 2-D gel protein separation profiles, we describe in this paper a novel registration technique based on image intensity  ...  However, two-dimensional polyacrylamide gel electrophoresis (2-DE) remains the core technology of choice for separating complex protein mixtures in the majority of proteome projects [11, 12] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/1615-9861(200107)1:7&lt;856::aid-prot856&gt;3.0.co;2-r">doi:10.1002/1615-9861(200107)1:7&lt;856::aid-prot856&gt;3.0.co;2-r</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11503210">pmid:11503210</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bj563z4wdvdvlhkbnjgtqjstuu">fatcat:bj563z4wdvdvlhkbnjgtqjstuu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20060903025810/http://stardec.ascc.neu.edu/~bba/BIO3580/SIB.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/5e/88/5e88cce67d76e78e3ce017a8eabf16db85f5f52a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/1615-9861(200107)1:7&lt;856::aid-prot856&gt;3.0.co;2-r"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a>

PRODUCTS & MATERIALS

<span title="1994-08-19">1994</span> <i title="American Association for the Advancement of Science (AAAS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/qirzh7firjdsjhg4tutxtir6ey" style="color: black;">Science</a> </i> &nbsp;
-pm-depth increments, the automatic centering and alignment capability enhances the system's three-dimensional imaging by guaranteeing perfect registration of each "slice," or sectional scan of a cell.  ...  a cell biologist with three-dimensional images of biomedical activity for only half the cost of currently available instruments, according to the manufacturer.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1126/science.265.5175.1123">doi:10.1126/science.265.5175.1123</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17832909">pmid:17832909</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ymt3iqan7jevroibordsvjsl4u">fatcat:ymt3iqan7jevroibordsvjsl4u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200309151643/https://science.sciencemag.org/content/sci/265/5175/1123.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d6/13/d613ca29df1030b9196290517fc9b093a2517e0f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1126/science.265.5175.1123"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> sciencemag.org </button> </a>

Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems

Evan Murray, Jae Hun Cho, Daniel Goodwin, Taeyun Ku, Justin Swaney, Sung-Yon Kim, Heejin Choi, Young-Gyun Park, Jeong-Yoon Park, Austin Hubbert, Margaret McCue, Sara Vassallo (+5 others)
<span title="2015-12-03">2015</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/iwommhyo5bdk7c3u37mhjzexfe" style="color: black;">Cell</a> </i> &nbsp;
Here, we introduce a simple method that enables proteomic imaging for scalable, integrated, high-dimensional phenotyping of both animal tissues and human clinical samples.  ...  We have performed 22 rounds of labeling of a single tissue with precise co-registration of multiple datasets.  ...  ACKNOWLEDGMENTS We thank the entire Chung laboratory for support and helpful discussions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.cell.2015.11.025">doi:10.1016/j.cell.2015.11.025</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26638076">pmid:26638076</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5275966/">pmcid:PMC5275966</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gomrshdzavgzxilh6ymju7uhha">fatcat:gomrshdzavgzxilh6ymju7uhha</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170924133210/http://publisher-connector.core.ac.uk/resourcesync/data/elsevier/pdf/15b/aHR0cDovL2FwaS5lbHNldmllci5jb20vY29udGVudC9hcnRpY2xlL3BpaS9zMDA5Mjg2NzQxNTAxNTA1Ng%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/2e/6a/2e6ace494cf52096be95dd3a433c16c7dd981c2d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.cell.2015.11.025"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5275966" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The role of bioinformatics in two-dimensional gel electrophoresis

Andrew W. Dowsey, Michael J. Dunn, Guang-Zhong Yang
<span title="">2003</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/fuys75pzlrec5izxlpab5g6jue" style="color: black;">Proteomics</a> </i> &nbsp;
To assess differential expression of protein spots in different samples run on a series of two-dimensional gels, a number of image registration techniques for correcting geometric distortion have been  ...  Over the last two decades, two-dimensional electrophoresis (2-DE) gel has established itself as the de facto approach to separating proteins from cell and tissue samples.  ...  Two-dimensional polyacrylamide gel electrophoresis is the only method currently available which is capable of simultaneously separating and quantitating 10 000 proteins [4] , and has dominated the field  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/pmic.200300459">doi:10.1002/pmic.200300459</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12923783">pmid:12923783</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7ahxqbjuujhaxdsosjid5ponbe">fatcat:7ahxqbjuujhaxdsosjid5ponbe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20110826214421/http://csce.uark.edu/~jgauch/library/papers/Dowsey.2003.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/54/3d/543dcfc35576ed286e7521966801bca18944fece.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/pmic.200300459"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a>

The state of the art in the analysis of two-dimensional gel electrophoresis images

Matthias Berth, Frank Michael Moser, Markus Kolbe, Jörg Bernhardt
<span title="2007-08-23">2007</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/pxrodjfapjez7ne4f2w6lxh2ri" style="color: black;">Applied Microbiology and Biotechnology</a> </i> &nbsp;
Software-based image analysis is a crucial step in the biological interpretation of two-dimensional gel electrophoresis experiments.  ...  We emphasize image warping and related methods that are able to overcome the difficulties that are due to varying migration positions of spots between gels.  ...  Acknowledgment We are thankful to Julia Bandow (Pfizer) for crucial input to the development of the 2-D gel analysis workflow based on consensus spot patterns (Bandow et al. 2007) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00253-007-1128-0">doi:10.1007/s00253-007-1128-0</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17713763">pmid:17713763</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2279157/">pmcid:PMC2279157</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/hocmhtfr6bft3op6cmry4awrlm">fatcat:hocmhtfr6bft3op6cmry4awrlm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190414063801/https://core.ac.uk/download/pdf/81203895.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/cd/cf/cdcfc10f61bef8b922b5fe5be5c6ade539e15ff8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00253-007-1128-0"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2279157" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Quantitative immunoassay of biotoxins on hydrogel-based protein microchips

A.Yu. Rubina, V.I. Dyukova, E.I. Dementieva, A.A. Stomakhin, V.A. Nesmeyanov, E.V. Grishin, A.S. Zasedatelev
<span title="">2005</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/5r4gfkeau5adlcnppdgahdnr2e" style="color: black;">Analytical Biochemistry</a> </i> &nbsp;
Three-dimensional gel-based microchips with immobilized proteins were used for quantitative immunoassay of a series of plant (ricin and viscumin) and bacterial (staphylococcal enterotoxin B, tetanus and  ...  Gel microchips with immobilized capture antibodies were used to analyze the sample simultaneously for the presence of all six biotoxins with the same sensitivity as that for any single toxin.  ...  Two-(B) and three-(C) dimensional fluorescent images of gel elements containing immobilized monoclonal antibodies against ricin 1Rch1, 0.1 mg/ml of gel, after interaction with ricin (100 ng/ml in PBS)  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.ab.2005.01.042">doi:10.1016/j.ab.2005.01.042</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15840505">pmid:15840505</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/z3ohhelotfbrfblo3434vg7xx4">fatcat:z3ohhelotfbrfblo3434vg7xx4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170810180536/https://www.bioee.ee.columbia.edu/courses/upload/Bibliography/rubina_analyticalbiochemistry_2005.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/41/f9/41f9f1b91f278a7f7c889b40b1bc2840be91ace3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.ab.2005.01.042"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

High accuracy FIONA–AFM hybrid imaging

D.N. Fronczek, C. Quammen, H. Wang, C. Kisker, R. Superfine, R. Taylor, D.A. Erie, I. Tessmer
<span title="">2011</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/xmpwwpc74bfqvn6c7ocyghllcy" style="color: black;">Ultramicroscopy</a> </i> &nbsp;
We investigate the limitations of localization precision and accuracy in fluorescence and AFM images separately and their effects on the overall registration accuracy of FIONA-AFM hybrid images.  ...  Single molecule imaging techniques such as electron microscopy (EM) and atomic force microscopy (AFM) are powerful methods for characterizing the structural properties of multi-protein and multi-protein-DNA  ...  IT and DF would like to thank Bennett Van Houten for fruitful discussions on DNA repair and Gudrun Michels for assistance with protein preparation.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.ultramic.2011.01.020">doi:10.1016/j.ultramic.2011.01.020</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21329649">pmid:21329649</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3179268/">pmcid:PMC3179268</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/kkh6xavme5f55dcaavdvgvioxa">fatcat:kkh6xavme5f55dcaavdvgvioxa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808040239/https://www.physics.ncsu.edu/wang/pdfs/FIONA_AFM_2011%20(2).pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9a/54/9a54a549d99519aec340ca3e5d063e4e98c2bf5d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.ultramic.2011.01.020"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3179268" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Three-Dimensional Approaches in Histopathological Tissue Clearing System

Tae Bok Lee, Jaewang Lee, Jin Hyun Jun
<span title="2020-03-31">2020</span> <i title="The Korean Society for Clinical Laboratory Science"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6olxbvt2tndozg7rq64m6t5akm" style="color: black;">Korean Journal of Clinical Laboratory Science</a> </i> &nbsp;
When performing integrated laboratory workflow of tissue for processing frozen and formalin-fixed tissues, clear lipid-exchanged acrylamide-hybridized rigid imaging/immunostaining/in situ hybridization-compatible  ...  This information includes spatial distribution of molecules, three-dimensional co-localization, structural formation and whole data set that cannot be determined by two-dimensional section slides due to  ...  Two-and three-dimensional images, as well as data analysis were obtained using Spots and Isosurfaces function based on the Imaris algorithm (Bitplane, UK).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.15324/kjcls.2020.52.1.1">doi:10.15324/kjcls.2020.52.1.1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/e7ug7lybsvc7bjzaotkvr7l5hy">fatcat:e7ug7lybsvc7bjzaotkvr7l5hy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200507095459/http://www.kjcls.org/journal/download_pdf.php?doi=10.15324/kjcls.2020.52.1.1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e7/d4/e7d4f13592d67ff4fb7488ff32038ac471346441.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.15324/kjcls.2020.52.1.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Comparison of nutritional and technological quality of winter wheat (Triticum aestivum L.) and hybrid wheat (Triticum aestivum L. x Triticum spelta L.)
Porovnanie nutričnej a technologickej kvality pšenice letnej, formy ozimnej (Triticum aestivum L.) a hybridnej pšenice (Triticum aestivum L. x Triticum spelta L.)

Dana RAJNINCOVÁ, Zdenka GÁLOVÁ, Lenka PETROVIČOVÁ, Milan CHŇAPEK
<span title="">2018</span> <i title="Journal of Central European Agriculture"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/f6vgmtbqdje7bmjsrdoyekt4du" style="color: black;">Journal of Central European Agriculture</a> </i> &nbsp;
Gluten proteins represent major protein fraction of the grain and are responsible for unique properties of the dough.  ...  Higher total content of amino acids was determined in hybrid wheat genotype PS Lubica (122.02 mg*g -1 dry weight). For the separation of glutenin protein subunits, SDS-PAGE method by ISTA was used.  ...  Two dimensional gel electrophoresis (2-DE) Dry mature grains were used for isolation of storage proteins. Extraction of proteins was performed according to Hurkman and Tanaka (1986) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5513/jcea01/19.2.2146">doi:10.5513/jcea01/19.2.2146</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nghf5wdv65co3dekx7tpg7jimu">fatcat:nghf5wdv65co3dekx7tpg7jimu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190430003137/https://hrcak.srce.hr/file/297099" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/df/13/df13bec5dd31f3acc84bfba194a47ad929eae6fb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5513/jcea01/19.2.2146"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Feature Detection Techniques for Preprocessing Proteomic Data

Kimberly F. Sellers, Jeffrey C. Miecznikowski
<span title="">2010</span> <i title="Hindawi Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/a5p2e7p4xfg23hvv3wca3cde5u" style="color: black;">International Journal of Biomedical Imaging</a> </i> &nbsp;
This work highlights existing and newly developed feature detection algorithms for proteomic datasets, particularly relating to time-of-flight mass spectrometry, and two-dimensional gel electrophoresis  ...  Low-level analysis issues (including normalization, background correction, gel and/or spectral alignment, feature detection, and image registration) are substantial problems that need to be addressed,  ...  Two-Dimensional Gel Electrophoresis.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2010/896718">doi:10.1155/2010/896718</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/20467457">pmid:20467457</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2864909/">pmcid:PMC2864909</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/epaeoq3ivveudmz7hx747o3doa">fatcat:epaeoq3ivveudmz7hx747o3doa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170829155328/http://faculty.georgetown.edu/kfs7/MY%20PUBLICATIONS/FeatureDetectionTechniques.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/72/17/7217d4a0f5dbf3da31eb93d4fa24e02d6d3e2a14.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2010/896718"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> hindawi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2864909" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Automated image alignment for 2D gel electrophoresis in a high-throughput proteomics pipeline

Andrew W. Dowsey, Michael J. Dunn, Guang-Zhong Yang
<span title="2008-02-28">2008</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4r72gbmtcrde5no3fwwogjs3cu" style="color: black;">Computer applications in the biosciences : CABIOS</a> </i> &nbsp;
The normalized images can then be compared directly in the image domain for quantitative differential analysis.  ...  The purpose of this article is to describe a fully automatic image alignment framework for the integration of 2-DE into a high-throughput differential expression proteomics pipeline.  ...  for image registration.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btn059">doi:10.1093/bioinformatics/btn059</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18310057">pmid:18310057</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/wwx75nghhrgqpniuwoc2mqhyyy">fatcat:wwx75nghhrgqpniuwoc2mqhyyy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180726225837/https://watermark.silverchair.com/btn059.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAb0wggG5BgkqhkiG9w0BBwagggGqMIIBpgIBADCCAZ8GCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMWeeb6-r0kv1UgVCZAgEQgIIBcJL2jheLQbcwofHO9QyoQtqj8E16Wcj6c7CN-sC7OpGcI2YHacKnvSCSFyRK-eGr67I8eZeZQ3I846CRu8CObzHtzB2UDiJN8feMAgjspdEFFWDfDs5o-N35xCpnZnVKmN8vQSdbW39ljMOSUyPyrFNxmKRuFNyLg4br6_o89va8Op7bbozfam-LSYnHy53l7IU3byc4VQqQil-QaWbaSOsCZBi15N5BkTK06n4KGMuNf3_KM9evoZMeTok88-XF8HtlGMzt-BUZxhTkXVMb1lvEHev13TOGkg9cHEIKuZXRleCmNhnso_1IS74ktxUNmoavViVAwowMcX3a9oM3fy9NT4-84-cqid9xIfumxwkPncRhbwyHz1ZSKqVCD5UNzgRYBXrqXRQFS2k0jSGKC2c-J2LR4vNXbUO_4mUNSkEVznWc1yyX3KP_hA1AW9d7sjuPdF0CM2UhsTz0Ctk_03UW__YqPW3cYNQ6RCEV1GZc" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d3/0d/d30dead2e8b30d4fff8e969a13dca3be01cea3a0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btn059"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

CLARITY for mapping the nervous system

Kwanghun Chung, Karl Deisseroth
<span title="">2013</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/l6cw2tyvgrhytbvantrj2os37y" style="color: black;">Nature Methods</a> </i> &nbsp;
Nonlinear imaging techniques such as two-photon microscopy address this out-of-focus photobleaching issue, but both single and two-photon imaging methods suffer from low image acquisition rate.  ...  The hydrogel-tissue hybridization preserves endogenous biomolecules ranging from neurotransmitters to proteins and nucleic acids 1 ; soluble proteins and cell-membrane proteins alike are secured by chemical  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nmeth.2481">doi:10.1038/nmeth.2481</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23722210">pmid:23722210</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/iptuzyetpvbnbm5kxznhz6w7hi">fatcat:iptuzyetpvbnbm5kxznhz6w7hi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808204429/http://clarityresourcecenter.com/pdfs/nmeth_CLARITY.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/dd/db/dddb7a3a829f0e3d5da557faa06db05e16eb39ad.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nmeth.2481"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

Fabrication of Microarray of Gel-Immobilized Compounds on a Chip by Copolymerization

A.V. Vasiliskov, E.N. Timofeev, S.A. Surzhikov, A.L. Drobyshev, V.V. Shick, A.D. Mirzabekov
<span title="">1999</span> <i title="Future Science, LTD"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6t7cfvh76ranblnkx6doquvcyq" style="color: black;">BioTechniques</a> </i> &nbsp;
The manufacturing of microchips containing oligonucleotides and proteins immobilized within gel pads, ranging in size from 10 × 10 to 100 × 100 µ m, is described.  ...  Acryloyl residues were attached to a protein by a twostep procedure. Photopolymerization was induced by illumination of the monomer solution containing initiator with UV light through the mask.  ...  Gemmell for preparation of 1-mm-square micromatrices, E. Novikova and C. Kaicher for editorial assistance and Dr. J. Zlatanova for critical review of the manuscript.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2144/99273rr06">doi:10.2144/99273rr06</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/10489618">pmid:10489618</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zek3oonx65grjmyv3sflbx4yha">fatcat:zek3oonx65grjmyv3sflbx4yha</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20160910142203/http://www.biotechniques.com:80/multimedia/archive/00011/99273rr06_11747a.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/03/7c/037c927ce7ea83e0c1fc091e4f9fc6afc933c392.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2144/99273rr06"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>
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