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Permeation Across Hydrated DPPC Lipid Bilayers: Simulation of the Titrable Amphiphilic Drug Valproic Acid

Johan Ulander, A.D.J. Haymet
<span title="">2003</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dez2wau7t5aqvklzwrcsreuwq4" style="color: black;">Biophysical Journal</a> </i> &nbsp;
The local diffusion constants for valproate/valproic acid along the bilayer normal are found to be ;10 ÿ6 to 10 ÿ5 cm 2 s ÿ1 .  ...  Assuming protonation of valproic acid upon association with-or insertion into-the lipid bilayer, we calculate the permeation coefficient to be ;2.0 10 ÿ3 cm s ÿ1 , consistent with recent experimental estimates  ...  Papoian for careful reading of the manuscript.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/s0006-3495(03)74768-7">doi:10.1016/s0006-3495(03)74768-7</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/14645043">pmid:14645043</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1303655/">pmcid:PMC1303655</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4tjtzeyfyvcynb2wkkk5iw4jci">fatcat:4tjtzeyfyvcynb2wkkk5iw4jci</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170925174616/http://publisher-connector.core.ac.uk/resourcesync/data/elsevier/pdf/2d9/aHR0cDovL2FwaS5lbHNldmllci5jb20vY29udGVudC9hcnRpY2xlL3BpaS9zMDAwNjM0OTUwMzc0NzY4Nw%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a8/42/a84224f3de5ca36959e39c9632c3262f0b777c3d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/s0006-3495(03)74768-7"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1303655" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Mesoscale simulations of two model systems in biophysics: from red blood cells to DNAs

Zhangli Peng, Yeng-Long Chen, Huijie Lu, Zehao Pan, Hsueh-Chia Chang
<span title="2015-09-10">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wds5nyr2wndq7anrnyidkiavqi" style="color: black;">Computational Particle Mechanics</a> </i> &nbsp;
The RBC is a model system for cell mechanics and biological membranes, while the DNA represents a model system for biopolymers.  ...  In this context, mesoscale modeling approaches such as Langevin dynamics, lattice Boltzmann method, and dissipative particle dynamics have become popular by simultaneously incorporating molecular interactions  ...  membranes by modeling the lipid bilayer and the cytoskeleton separately using two twodimensional triangulated networks with N v DPD particles [19] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s40571-015-0057-4">doi:10.1007/s40571-015-0057-4</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ddylsd33zbfjhi4w7t66dbicj4">fatcat:ddylsd33zbfjhi4w7t66dbicj4</a> </span>
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Coarse-Grained Models for Protein-Cell Membrane Interactions

Ryan Bradley, Ravi Radhakrishnan
<span title="2013-07-02">2013</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ma7srn4ogzduvotoi5tuhzgngu" style="color: black;">Polymers</a> </i> &nbsp;
This paper reviews continuum modeling and coarse-grained molecular dynamics methods, which connect atomistic simulations and single-molecule experiments with the observed microscopic or mesoscale properties  ...  Recent computational modeling efforts have helped illuminate experiments that characterize the ways in which proteins modulate membrane physics.  ...  Other hybrid approaches merge atomistic models with continuum methods in order to study protein-nucleic acid complexes [243] and membrane-peptide association [244] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/polym5030890">doi:10.3390/polym5030890</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26613047">pmid:26613047</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4656979/">pmcid:PMC4656979</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/64zxewaufffwhlxlyu2uwfanua">fatcat:64zxewaufffwhlxlyu2uwfanua</a> </span>
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Lateral Diffusion in Membranes [chapter]

P.F.F. Almeida, W.L.C. Vaz
<span title="">1995</span> <i title="Elsevier"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wbnnnyl4qjakdjx3eqf3b52qta" style="color: black;">Handbook of Biological Physics</a> </i> &nbsp;
We thank Michael Saxton for a preprint of his papers [127, 128] , and for many discussions on diffusion and percolation, which were an important contribution to improve our understanding of these problems  ...  This model is thus best applicable to diffusion of integral membrane proteins in lipid bilayers.  ...  These can be lipid-protein membranes with a high protein concentration or multi-component lipid bilayers where two or more laterally separated phases coexist.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/s1383-8121(06)80023-0">doi:10.1016/s1383-8121(06)80023-0</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/j4yliunjrnb7toizwvwa3mieju">fatcat:j4yliunjrnb7toizwvwa3mieju</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808115647/https://www.physics.uoguelph.ca/~dutcher/download/handbook%20of%20biological%20physics/6.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f9/47/f947e6ba874e77d77e6b17f7adcd88b0330e5991.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/s1383-8121(06)80023-0"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins

N. Ramakrishnan, P.B. Sunil Kumar, Ravi Radhakrishnan
<span title="">2014</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jpqyz5yp6vdibnpfaxmvgvtise" style="color: black;">Physics reports</a> </i> &nbsp;
The specificity of molecular interactions together with the cooperativity of multiple proteins induce and stabilize complex membrane shapes at the mesoscale.  ...  Physico-chemical mechanisms at the atomic scale are dictated by protein-lipid interaction strength, lipid composition, lipid distribution in the vicinity of the protein, shape and amino acid composition  ...  Ipsen for many insightful discussions. They also thank numerous colleagues at the University of Pennsylvania and the Indian Institute of Technology Madras for their various inputs.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.physrep.2014.05.001">doi:10.1016/j.physrep.2014.05.001</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25484487">pmid:25484487</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4251917/">pmcid:PMC4251917</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4mqhj4ajtrdw5phugigmwigqwu">fatcat:4mqhj4ajtrdw5phugigmwigqwu</a> </span>
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Mesoscopic models of biological membranes

M VENTUROLI, M MADDALENASPEROTTO, M KRANENBURG, B SMIT
<span title="">2006</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jpqyz5yp6vdibnpfaxmvgvtise" style="color: black;">Physics reports</a> </i> &nbsp;
The properties of lipid bilayers can be studied at different time and length scales.  ...  For some properties it is sufficient to envision a membrane as an elastic sheet, while for others it is important to take into account the details of the individual atoms.  ...  The particles can move and interact with one another in two dimensions with continuum coordinates.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.physrep.2006.07.006">doi:10.1016/j.physrep.2006.07.006</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/y3p24kedsjbvhkkdl4b4j5fe5e">fatcat:y3p24kedsjbvhkkdl4b4j5fe5e</a> </span>
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Interactions between model inclusions on closed lipid bilayer membranes

Timon Idema, Daniela J. Kraft
<span title="">2019</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/czdp4yhqmvbcpeauweu5da7dsa" style="color: black;">Current Opinion in Colloid &amp; Interface Science</a> </i> &nbsp;
We review the current knowledge on the biologically most relevant case, inclusions on lipid membranes with a closed surface, and discuss challenges and opportunities for further progress.  ...  Protein inclusions in the membranes of living cells interact via the deformations they impose on that membrane.  ...  We furthermore would like to thank all authors of the work highlighted in our figures for sharing their original image data with us.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.cocis.2019.01.006">doi:10.1016/j.cocis.2019.01.006</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zb7iz7o3k5d4hcq7ua6atin63m">fatcat:zb7iz7o3k5d4hcq7ua6atin63m</a> </span>
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Multiscale simulations of protein-facilitated membrane remodeling

Aram Davtyan, Mijo Simunovic, Gregory A. Voth
<span title="">2016</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jd46qpwqmngwvbsru66azubidu" style="color: black;">Journal of Structural Biology</a> </i> &nbsp;
Protein-facilitated shape and topology changes of cell membranes are crucial for many biological processes, such as cell division, protein trafficking, and cell signaling.  ...  The atomistic simulations provide high-resolution information on protein-membrane interactions.  ...  Those values are generally consistent with expected range from a few k B T to tens of k B T for lipid bilayer (Marsh, 2007) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jsb.2016.06.012">doi:10.1016/j.jsb.2016.06.012</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27327264">pmid:27327264</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5031523/">pmcid:PMC5031523</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xrgj7wb5jfgatjle2exe6klbhi">fatcat:xrgj7wb5jfgatjle2exe6klbhi</a> </span>
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Continuum Approaches to Understanding Ion and Peptide Interactions with the Membrane

Naomi R. Latorraca, Keith M. Callenberg, Jon P. Boyle, Michael Grabe
<span title="2014-03-21">2014</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dljzcmicnrhvncxgqlg6nnurzy" style="color: black;">Journal of Membrane Biology</a> </i> &nbsp;
Experimental and computational studies have shown that cellular membranes deform to stabilize the inclusion of transmembrane (TM) proteins harboring charge.  ...  Keywords Ion permeation Á Membrane elasticity Á Continuum Á Coarse grained Á Rhoptry protein 5 (ROP5) Naomi R. Latorraca and Keith M. Callenberg have contributed equally to this work.  ...  We also thank Frank Marcoline for help implementing the dipole potential, and John Rosenberg, Daniel Zuckerman, Patrick Van der Wel, Joshua Adelman and Charles Wolgemuth for enlightening discussions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00232-014-9646-z">doi:10.1007/s00232-014-9646-z</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24652510">pmid:24652510</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4096575/">pmcid:PMC4096575</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rbegebrq4vemjnafm4n5u23nie">fatcat:rbegebrq4vemjnafm4n5u23nie</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809100833/http://www.pitt.edu/~boylej/latorraca_grabe_j_memb_biol.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ff/a0/ffa07d51ace869b4ee9e32188371d1e563c4b485.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00232-014-9646-z"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4096575" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Toward an atomistic understanding of the immune synapse: Large-scale molecular dynamics simulation of a membrane-embedded TCR–pMHC–CD4 complex

Shunzhou Wan, Darren R. Flower, Peter V. Coveney
<span title="">2008</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/risl4vgtgvabhghop5762qo5si" style="color: black;">Molecular Immunology</a> </i> &nbsp;
T-cell activation requires interaction of T-cell receptors (TCR) with peptide epitopes bound by major histocompatibility complex (MHC) proteins.  ...  Using molecular dynamics simulation, we report here on a study of the smallest viable model, a TCR-pMHC-CD4 complex in a membrane environment.  ...  the Computer Services for Academic Research (CSAR).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.molimm.2007.09.022">doi:10.1016/j.molimm.2007.09.022</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17980430">pmid:17980430</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vohnsop6drbyliqdwyjvz4cuo4">fatcat:vohnsop6drbyliqdwyjvz4cuo4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20120907110508/http://www.realitygrid.org:80/publications/MIMM2530.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/19/70/19704e4c289de24970d106fb9d76be8542ce23c8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.molimm.2007.09.022"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Seeing the Forest in Lieu of the Trees [chapter]

Kayla Sapp, Roie Shlomovitz, Lutz Maibaum
<span title="">2014</span> <i title="Elsevier"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wx3gmqyiyncovencpi4ghqumxa" style="color: black;">Annual Reports in Computational Chemistry</a> </i> &nbsp;
proteins.  ...  We discuss in detail two applications of continuum models of cell membranes: the formation of microemulsion and modulated phases, and the effect of membrane-mediated interactions on the assembly of membrane  ...  Acknowledgments We thank Michael Schick and Sarah Keller for many insightful discussions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/b978-0-444-63378-1.00003-3">doi:10.1016/b978-0-444-63378-1.00003-3</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26366141">pmid:26366141</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4567254/">pmcid:PMC4567254</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2uqkuup3jvefnofmyuxgy3pjfu">fatcat:2uqkuup3jvefnofmyuxgy3pjfu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191115040747/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC4567254&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/43/a2/43a2804853b54bd58eb0be21581151fe640e55f6.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/b978-0-444-63378-1.00003-3"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4567254" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Dynamic and rheological properties of soft biological cell suspensions

Alireza Yazdani, Xuejin Li, George Em Karniadakis
<span title="2015-09-03">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ewy4dnifjjcpnfpb5eohqirly4" style="color: black;">Rheologica Acta</a> </i> &nbsp;
Quantifying dynamic and rheological properties of suspensions of soft biological particles such as vesicles, capsules, and red blood cells (RBCs) is fundamentally important in computational biology and  ...  A.Y. acknowledges TACC/STAMPEDE resources through XSEDE grant (TG-DMS140007), and X.L. acknowledges ALCF through INCITE program for providing computational resources that have lead to the unpublished research  ...  Its cell membrane is made of a lipid bilayer reinforced on its inner face by a flexible two-dimensional skeletal protein network.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00397-015-0869-4">doi:10.1007/s00397-015-0869-4</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27540271">pmid:27540271</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4987001/">pmcid:PMC4987001</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zxrtcievlnbkri6flgbin7z4sy">fatcat:zxrtcievlnbkri6flgbin7z4sy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191019023513/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC4987001&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ce/c9/cec9d63ff33151f383352ae8e7d70d02346e510f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00397-015-0869-4"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987001" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

LamellarLαMesophases Doped with Inorganic Nanoparticles

Doru Constantin, Patrick Davidson
<span title="2014-02-24">2014</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/qmmukgivqzarjfel7dtpy4437m" style="color: black;">ChemPhysChem</a> </i> &nbsp;
Control of both the position and orientation of the particles in a precise and reproducible way is an important goal.  ...  The development of nanostructured hybrid systems is a flourishing area of research, which brings together chemistry, physics and materials science.  ...  Inserting inorganic nanoparticles into soft lyotropic mesophases yields systems with new functional properties.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/cphc.201301187">doi:10.1002/cphc.201301187</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24616130">pmid:24616130</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zvx3zftgwjesddgj6txcbj5yli">fatcat:zvx3zftgwjesddgj6txcbj5yli</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190505094846/https://hal.archives-ouvertes.fr/hal-00991875/document" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/35/7f/357fdf76c66d264abd19b73ba2a9bfc8deab18e1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/cphc.201301187"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a>

Protein-Mediated Transformation of Lipid Vesicles into Tubular Networks

Mijo Simunovic, Carsten Mim, Thomas C. Marlovits, Guenter Resch, Vinzenz M. Unger, Gregory A. Voth
<span title="">2013</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dez2wau7t5aqvklzwrcsreuwq4" style="color: black;">Biophysical Journal</a> </i> &nbsp;
N-BAR-domain protein modules generate curvature by means of complex interactions with the membrane surface.  ...  We show that lipid diffusion is significantly reduced by protein binding at this density regime and even more in areas of high Gaussian curvature, indicating a potential effect on molecular transport in  ...  We thank the National Science Foundation for providing computational resources through XSEDE (grant number TG-MCA94P017) on the Kraken supercomputer.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.bpj.2013.06.039">doi:10.1016/j.bpj.2013.06.039</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23931319">pmid:23931319</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3736692/">pmcid:PMC3736692</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/edhvqbez35gbzjzku4lhf4wz6e">fatcat:edhvqbez35gbzjzku4lhf4wz6e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190325094539/https://core.ac.uk/download/pdf/82497259.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/7b/41/7b41fac616488939ab02f1b8218d92a24aa61957.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.bpj.2013.06.039"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3736692" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Computational Modeling of Realistic Cell Membranes

Siewert J. Marrink
<span title="">2018</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dez2wau7t5aqvklzwrcsreuwq4" style="color: black;">Biophysical Journal</a> </i> &nbsp;
Cell membranes contain a large variety of lipid types and are crowded with proteins, endowing them with the plasticity needed to fulfill their key roles in cell functioning.  ...  The compositional complexity of cellular membranes gives rise to a heterogeneous lateral organization, which is still poorly understood.  ...  as simulations model larger and increasingly complex systems and begin to overlap with direct measurements of diffusion of membrane proteins by spectroscopic methods.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.bpj.2017.11.2032">doi:10.1016/j.bpj.2017.11.2032</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/opnbavtgknhqvhjfvosyawur2u">fatcat:opnbavtgknhqvhjfvosyawur2u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200508071805/https://pure.rug.nl/ws/files/101217700/acs.chemrev.8b00460.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9f/4f/9f4fd9f95083d2f83315db26c48ce98cde39be7d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.bpj.2017.11.2032"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>
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