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HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns

S. Graf
<span title="2001-01-01">2001</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
The database, called HyPaLib (for Hybrid Pattern Library), contains annotated structural elements characteristic for certain classes of structural and/or functional RNAs.  ...  The language allows convenient specification of hybrid patterns, i.e. motifs consisting of sequence features and structural elements together with sequence similarity and thermodynamic constraints.  ...  Giegerich for stimulating discussions and for his support. This work was supported by grants from the Deutsche Forschungsgemeinschaft (STE465/4 and KU1257/1) and Fonds der Chemischen Industrie.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/29.1.196">doi:10.1093/nar/29.1.196</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11125089">pmid:11125089</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC29855/">pmcid:PMC29855</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qsszgqumnng3rjvxyvkfcmp3wq">fatcat:qsszgqumnng3rjvxyvkfcmp3wq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190428082829/https://pub.uni-bielefeld.de/download/1773898/2311337/196.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/89/26/8926ea526c43147906f53589b87c283ccb0be3e9.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/29.1.196"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC29855" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Evolutionary patterns of non-coding RNAs

A BOMPFUNEWERER
<span title="2005-04-15">2005</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ghghutmknrfohhnh4scokr3q5y" style="color: black;">Theory in biosciences</a> </i> &nbsp;
We present a survey of Y RNA genes in vertebrates, studies of the molecular evolution of the U7 snRNA, the snoRNAs E1/U17, E2, and E3, the Y RNA family, the let-7 microRNA family, and the mRNA-like evf  ...  In this contribution we attempt to provide at least a cursory overview of the diversity of non-coding RNAs and functional RNA motifs in non-translated regions of regular messenger RNAs (mRNAs) with an  ...  Acknowledgements We thank Rolf Backofen and Daniel Gautheret for their comments on an earlier version of this manuscript.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.thbio.2005.01.002">doi:10.1016/j.thbio.2005.01.002</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18202870">pmid:18202870</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3alkigssu5boppb5egbw2x6njy">fatcat:3alkigssu5boppb5egbw2x6njy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20050530013901/http://www.bioinf.uni-leipzig.de:80/Publications/PREPRINTS/05-001.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.thbio.2005.01.002"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>