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Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource

Megan Druce, Chantal Hulo, Patrick Masson, Paula Sommer, Ioannis Xenarios, Philippe Le Mercier, Tulio De Oliveira
<span title="">2016</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ejkvir3kzbdojf5kygupkidsca" style="color: black;">Database: The Journal of Biological Databases and Curation</a> </i> &nbsp;
The Human Immunodeficiency Virus (HIV) is one of the pathogens that cause the greatest global concern, with approximately 35 million people currently infected with HIV.  ...  Our improved BioAfrica HIV-1 Proteome Resource fills a gap in the current knowledge of biocuration.  ...  Introduction The objective of the BioAfrica HIV-1 Proteomics Resource is to provide accurate and comprehensive information on Human Immunodeficiency Virus (HIV) proteins.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/baw045">doi:10.1093/database/baw045</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27087306">pmid:27087306</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4834208/">pmcid:PMC4834208</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/co5gnfsjkvbzfpy2szl7aw26em">fatcat:co5gnfsjkvbzfpy2szl7aw26em</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190216032718/http://pdfs.semanticscholar.org/00c7/a5db879a438c99a4adc1094fad2bbc03a133.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/00/c7/00c7a5db879a438c99a4adc1094fad2bbc03a133.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/baw045"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4834208" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

BioAfrica's HIV-1 proteomics resource: combining protein data with bioinformatics tools

Ryan S Doherty, Tulio De Oliveira, Chris Seebregts, Sivapragashini Danaviah, Michelle Gordon, Sharon Cassol
<span title="2005-03-09">2005</span> <i title="Springer (Biomed Central Ltd.)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/rhihhtbynza5veezyszwayabia" style="color: black;">Retrovirology</a> </i> &nbsp;
The HIV-1 Proteomics Resource is readily accessible through the BioAfrica website at: http://bioafrica.mrc.ac.za/proteomics/index.html.  ...  The BioAfrica HIV-1 Proteomics Resource http://bioafrica.mrc.ac.za/proteomics/index.html is a website that contains detailed information about the HIV-1 proteome and protease cleavage sites, as well as  ...  Gag -group-specific antigen polyprotein GIF -Graphics Interchange Format HIV -Human Immunodeficiency Virus HIV-1 -Human Immunodeficiency Virus Type-1 HTTP -Hypertext Transfer Protocol LTR -long-terminal  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1742-4690-2-18">doi:10.1186/1742-4690-2-18</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15757512">pmid:15757512</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC555852/">pmcid:PMC555852</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/27uslqjggncvbkqnbkfdaud5xm">fatcat:27uslqjggncvbkqnbkfdaud5xm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190426143459/https://retrovirology.biomedcentral.com/track/pdf/10.1186/1742-4690-2-18" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/14/46/1446ef0a8fe087f5e59f5c6328440ef7553439b3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1742-4690-2-18"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC555852" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Translation initiation in human immunodeficiency virus type 1 (HIV-1)

Sam Khalouei, Université D'Ottawa / University Of Ottawa, Université D'Ottawa / University Of Ottawa
<span title="2013-11-07">2013</span>
Translation of human immunodeficiency virus type 1 (HIV-1) mRNAs is entirely dependent on the host translation machinery.  ...  Therefore, a thorough understanding of the Kozak consensus and translation initiation in human would also shed light on the mechanism of translation initiation in HIV-1.  ...  Human Immunodeficiency Virus Type 1 (HIV-1) HIV originates from Simian Immunodeficiency Virus (SIV) that infects nonhuman primates . It has two forms; HIV-1 and HIV-2.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.20381/ruor-12287">doi:10.20381/ruor-12287</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/yp2xsms3one25cnbtfzi3sjqly">fatcat:yp2xsms3one25cnbtfzi3sjqly</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200214061152/https://ruor.uottawa.ca/bitstream/10393/27866/1/MR49224.PDF" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d4/02/d402786c8b0527ffcbd8a23b060751a4b5b13bda.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.20381/ruor-12287"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Prevalence and Characteristics of Hepatitis B Virus (HBV) Coinfection among HIV-Positive Women in South Africa and Botswana

Philippa C. Matthews, Apostolos Beloukas, Amna Malik, Jonathan M. Carlson, Pieter Jooste, Anthony Ogwu, Roger Shapiro, Lynn Riddell, Fabian Chen, Graz Luzzi, Manjeetha Jaggernath, Gerald Jesuthasan (+6 others)
<span title="2015-07-28">2015</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
Overall, these data provide a snapshot of the coinfection problem at the heart of the HIV/HBV co-epidemic, and are important to inform public health policy, resource allocation, education, surveillance  ...  There is progressive concern about the evolving burden of morbidity and mortality caused by coinfection with HIV-1 and hepatitis B virus (HBV) in sub-Saharan Africa, but the epidemiology and impact of  ...  Introduction There has been a recent revival of political and clinical interest in the problem of infection with Hepatitis B Virus (HBV) in sub-Saharan African populations in whom Human Immunodeficiency  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0134037">doi:10.1371/journal.pone.0134037</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26218239">pmid:26218239</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4517770/">pmcid:PMC4517770</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3iftg4byazcs5pv643rdtio63e">fatcat:3iftg4byazcs5pv643rdtio63e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171011020839/http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0134037&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/18/7c/187c892e03027366fe36aad42124e17b835bdd27.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0134037"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4517770" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

MOESM1 of Protein profiles of bacteriophages of the family Myoviridae-like induced on M. haemolytica

Renata Urban-Chmiel, Andrzej Wernicki, Jacek Wawrzykowski, Andrzej Puchalski, Anna Nowaczek, Marta Dec, Diana StęGierska, Mohammed Alomari
<span title="2018-06-20">2018</span> <i title="Figshare"> Figshare </i> &nbsp;
DE RecName: Full=Gag-Pol polyprotein; GN Name=gag-pol; OS Human immunodeficiency virus type 1 group M subtype J (isolate SE9280) OS (HIV-1).  ...  -WEB RESOURCE: Name=BioAfrica: HIV bioinformatics in Africa; CC URL="http://www.bioafrica.net/index.html"; DR EMBL; AF082394; AAD17757.1; ALT_SEQ; Genomic_DNA.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6084/m9.figshare.6616250">doi:10.6084/m9.figshare.6616250</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/hch34skxorg55m2amdcvssqzqy">fatcat:hch34skxorg55m2amdcvssqzqy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200220152607/https://s3-eu-west-1.amazonaws.com/pstorage-npg-968563215/12110630/13568_2018_630_MOESM1_ESM.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/67/2a/672ae1fa601246eba766dbe4246503521b75305b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6084/m9.figshare.6616250"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> figshare.com </button> </a>

Virus Databases ☆ [chapter]

Kathleen McLeod, Chris Upton
<span title="">2017</span> <i title="Elsevier"> Reference Module in Biomedical Sciences </i> &nbsp;
Acknowledgements The authors would like to thank Chad Smithson for help assembling the collection of virus databases.  ...  The first is the Los Alamos Human Immunodeficiency Virus (HIV; retrovirus; small RNA genome; www.hiv.lanl.gov/) sequence database, which has to manage several unique features, including virus drug resistance  ...  The remainder of this section will compare and contrast three types of virus database resources: the Influenza Virus Resource at NCBI; the Virus Pathogen Resource Bioinformatics Resource Center (ViPRbrc  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/b978-0-12-801238-3.95728-3">doi:10.1016/b978-0-12-801238-3.95728-3</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/hmkdfmz4urgcdjzgo3jqsohace">fatcat:hmkdfmz4urgcdjzgo3jqsohace</a> </span>
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