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High Performance Computing for Computational Biology - Session Introduction

Thomas E. Ferrin, Bruce A. Foster, Richard Hughey
2001 Pacific Symposium on Biocomputing  
dblp:conf/psb/FerrinFH01 fatcat:yjpci5shl5cclignygyix62fwm

Session Introduction

Gürkan Bebek, Mehmet Koyutürk, Mark R. Chance, Nathan D. Price
2011 Pacific Symposium on Biocomputing  
Translational Science Session.  ...  would like to thank all the anonymous reviewers who contributed with their invaluable time, and expertise to evaluate submitted papers, and the authors who submitted their work to the Integrative-omics for  ...  This session targets computational approaches aimed for finding molecular mechanisms and therapies for disease, computational methods and algorithms for the analysis of molecular and clinical measurements  ... 
dblp:conf/psb/BebekKCP11 fatcat:rbroqmf25vftzextna2f44kthi

Session Introduction

Lukasz A. Kurgan, Predrag Radivojac, Joel L. Sussman, A. Keith Dunker
2020 Pacific Symposium on Biocomputing  
The first computational biology/bioinformatics papers on these proteins were reported between 1998 and 2002, and these computational efforts rapidly increased shortly thereafter.  ...  We also highlight a recent collection of papers on IDPs and IDRs that are driven by computational biology and bioinformatics efforts.  ...  Papers on IDPs and IDRs The "Intrinsically Disordered Proteins and Their Functions" session at the 2020 PSB meeting includes five articles that focus on the computational biology and bioinformatics efforts  ... 
dblp:conf/psb/KurganRSD20 fatcat:72zktpjhwngffg2abaqf4dvpju

Session Introduction

Julie Bernauer, Samuel Flores, Xuhui Huang, Seokmin Shin, Ruhong Zhou
2011 Pacific Symposium on Biocomputing  
The sessions chairs would like to thank all the authors and anonymous reviewers who contributed to the session.  ...  Due to its crucial high-level perspective of the mesoscale, systems biology is one of the foci of our session.  ...  The role of computer modeling at this level has grown in the emerging discipline of systems biology.  ... 
dblp:conf/psb/BernauerFHSZ11 fatcat:cc7umbklpja7tckuhjetcro6ue

Session Introduction

Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Atul J. Butte, Maricel G. Kann
2009 Pacific Symposium on Biocomputing  
Acknowledgements The session co-chairs would like to thank numerous reviewers for their help in select the best papers for the session Molecular Bioinformatics for Disease and Dr.  ...  Andrea Califano for his participation as a Session Keynote.  ...  The accepted papers for the session on Molecular Bioinformatics for Diseases comprises original research projects that span human genome variation, host-pathogen interactions, phenotypic relationship,  ... 
dblp:conf/psb/LussierLROBK09 fatcat:pqlv4ax4jjbpbnhuvdfn3qaj2i

Session Introduction

Shefali Setia Verma, Anurag Verma, Dokyoon Kim, Christian Darabos
2019 Pacific Symposium on Biocomputing  
Demand is high for novel computational techniques that can cope with these large datasets and have the potential to support translational research.  ...  Our session also aims at discussing the optimization of tool development for large scale datasets and challenges that are associated with the computational cost as well as resources for pattern recognition  ... 
dblp:conf/psb/VermaVKD19 fatcat:ebntkdfcqzel7hwkgi7ycnrp3m

Session Introduction

Graciela Gonzalez, Chitta Baral, Jeff Kiefer, Suengchan Kim, Jieping Ye
2015 Pacific Symposium on Biocomputing  
Kim et al touches on a number of themes appropriate for this session. They present a novel methodology for leveraging somatic mutation data for predicting survival in cancer samples.  ...  Yang et al present a computational system for automated gene expression pattern annotation on mouse brain images.  ...  Introduction This session brings together researchers in text and data mining, knowledge representation and reasoning with bench scientists, geneticists and translational scientists.  ... 
dblp:conf/psb/GonzalezBKKY15 fatcat:7gng6zhalrechc2ghw3wjylkdu

Session Introduction

Li Shen, Lee A. D. Cooper
2017 Pacific Symposium on Biocomputing  
The Imaging Genomics Session at PSB 2017 aims to encourage discussion on fundamental concepts, new methods and innovative applications in this young and rapidly evolving field.  ...  Imaging genomics is an emerging research field, where integrative analysis of imaging and omics data is performed to provide new insights into the phenotypic characteristics and genetic mechanisms of normal  ...  We would like to thank all the authors for their high-quality submissions and excellent presentations.  ... 
dblp:conf/psb/ShenC17 fatcat:fyuohdxvxbbq5kxq6r5d6gys6q

Session Introduction

Alexander J. Hartemink, Manolis Kellis, William Stafford Noble, Zhiping Weng
2013 Pacific Symposium on Biocomputing  
The recent availability of large epigenomic data sets, coupled with the increasing recognition of the importance of epigenetic phenomena, has spurred a growing interest in computational methods for interpreting  ...  This session includes three papers, each of which describes a novel computational method for the analysis and interpretation of one or more types of epigenomic data.  ...  gene regulation, and given the increasing availability of DNase 1 data for a wide variety of human cell types, a variety of computational methods have been developed to interpret DNase 1 sensitivity data  ... 
dblp:conf/psb/HarteminkKNW13 fatcat:l36kma4uafhwdpokguvvu3inpa

Session introduction

Jennifer Listgarten, Oliver Stegle, Quaid Morris, Steven E. Brenner, Leopold Parts
2014 Pacific Symposium on Biocomputing  
Session contributions The session keynote is given by Robert Gentleman, who has spearheaded the use of computational methods in biology and medicine [26] , and is currently employing them to design cancer  ...  In our session, Martin et al. analyse the performance of different genotyping platforms for imputing rare coding variation.  ... 
dblp:conf/psb/ListgartenSMBP14 fatcat:r4oyqbmpvjdh5hadrr2fu7nj6a

Session introduction

Graciela Gonzalez, Kevin Bretonnel Cohen, Robert Leaman, Casey S. Greene, Nigam Shah, Maricel G. Kann, Jieping Ye
2014 Pacific Symposium on Biocomputing  
The PSB 2014 Session on Text and Data Mining for Biomedical Discovery presents eight papers that advance the field in this mutually reinforcing fashion.  ...  Text mining approaches selected for presentation include a method for predicting genes involved in disease or in drug response, a method for extracting events relevant to biological pathways, and an approach  ...  The proposed kernel showed high performance in the task of classifying proteins in SCOP classes.  ... 
dblp:conf/psb/GonzalezCLGSKY14 fatcat:zrmumoip5bdbhhykhboyztxn3y

Session Introduction

Nikolay Samusik, Nima Aghaeepour, Sean Bendall
2017 Pacific Symposium on Biocomputing  
This session is dedicated to computational methods for single-cell analysis in various biological domains, modelling of population heterogeneity, as well as translational applications of single cell data  ...  Sophisticated computational algorithms are required in order to harness the power of single-cell data.  ...  We thank all of the authors who submitted papers for this session and all of the reviewers who contributed their time and expertise.  ... 
dblp:conf/psb/SamusikAB17 fatcat:7jax7cr2grhupit6qkgbluxoxy

Session introduction

Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jill P. Mesirov, Alexander A. Morgan, Predrag Radivojac
2019 Pacific Symposium on Biocomputing  
For the 2019 Pacific Symposium on Biocomputing's session on precision medicine, we present new research on computational techniques in range of areas including data curation, whole genome analysis, transcriptomics  ...  Introduction For this session we sought submissions that drive research forward in the development of techniques in high resolution data science to advance personalization in clinical care based on quantified  ...  James Lind, a naval surgeon, performed the first controlled clinical trial of a therapeutic intervention in 1747, with a multi-arm study of six different possible interventions for scurvy.  ... 
dblp:conf/psb/BrennerBCMMR19 fatcat:qfdr4qjzqzbn5c5fhdjbtssdki

Session Introduction

Graciela Gonzalez-Hernandez, Abeed Sarker, Karen O'Connor, Casey S. Greene, Hongfang Liu
2018 Pacific Symposium on Biocomputing  
This session sought to elicit participation of researchers with strong background in text mining and/or visualization who are actively collaborating with bench scientists and clinicians for the deployment  ...  , and lifestyle for each person."  ...  Introduction According to the National Institutes of Health (NIH), precision medicine is "an emerging approach for disease treatment and prevention that takes into account individual variability in genes  ... 
dblp:conf/psb/Gonzalez-Hernandez18 fatcat:7tzzc2yqwjfalphrpk4tabzvye

Session Introduction

Anna Okula Basile, Anurag Verma, Marta Byrska-Bishop, Sarah P. Pendergrass, Christian Darabos, H. Lester Kirchner
2017 Pacific Symposium on Biocomputing  
The papers selected for this session focus on novel machine learning techniques as well as applications of established methods to heterogeneous data.  ...  session of the 2017 Pacific Symposium on Biocomputing (PSB) is devoted to exploring pattern recognition using data-driven approaches for biomedical and precision medicine applications.  ...  High throughput computational approaches could help fast track the evaluation of new potential pathways.  ... 
dblp:conf/psb/BasileVBPDK17 fatcat:6rxvfi7ktvcnhdi5afl2yzngbi
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