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Grid Technology for Biomedical Applications [chapter]

Vincent Breton, Christophe Blanchet, Yannick Legré, Lydia Maigne, Johan Montagnat
2005 Lecture Notes in Computer Science  
These applications have demonstrated that the grid paradigm was relevant to the needs of the biomedical community.  ...  The deployment of biomedical applications in a grid environment has started about three years ago in several European projects and national initiatives.  ...  Vision for a grid for health The example used to introduce this paper illustrates the potential impact of grid technology for health.  ... 
doi:10.1007/11403937_17 fatcat:l72jqabwljebnalku5qhzsstfm

Application of an integrated PHY and MAC layer model for half-duplex IEEE 802.15.4 networks to smart grids

Batool Talha, Piergiuseppe Di Marco, Mostafa Kaveh
2011 Proceedings of the 4th International Symposium on Applied Sciences in Biomedical and Communication Technologies - ISABEL '11  
This paper puts the spotlight on the home/building area network of the smart grid.  ...  An integrated physical (PHY) and medium access control (MAC) layer analytical model is introduced for half-duplex IEEE 802.15.4 networks.  ...  CONCLUSION In this article, we exemplify the application of an integrated PHY and MAC layer model for half-duplex IEEE 802.15.4 networks to smart grids.  ... 
doi:10.1145/2093698.2093839 dblp:conf/isabel/TalhaMK11 fatcat:r5igu42qjrgivgsqwemsawp2kq

Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid

Chun-Hsi Huang, Akihiko Konagaya, Vincenzo Lanza, Peter M. A. Sloot
2008 IEEE Transactions on Information Technology in Biomedicine  
Nowadays, the grids have been moving out of research laboratories into early adopter production systems, such as the computational grid for computation-intensive applications, the data grid for distributed  ...  and optimized storage of large amounts of accessible data, as well as the knowledge grid for intelligent use of the data grid for knowledge creation and tools to all users.  ...  Article [20] combines high-performance computing and grid computing technologies to accelerate multiple executions of a biomedical application that simulates the action potential propagation on cardiac  ... 
doi:10.1109/titb.2008.918585 pmid:18416025 fatcat:tmlicpixnbeljbaut7mhays2zm

Development of an information platform for new grid users in the biomedical field

Daniela Skrowny, Frank Dickmann, Benjamin Löhnhardt, Tobias A Knoch, Ulrich Sax
2010 Studies in Health Technology and Informatics  
Especially in life sciences it is essential to have a certain amount of users to establish a critical mass for a sustainable grid and give feedback back to the technological middleware layer.  ...  By providing a platform about grid technology and their feasibilities for users of the community of biomedicine potential, users could be supported using the high potential of their discipline.  ...  The biomedical sciences community, more precisely MediGRID [2] was the first biomedical approach to grid technology within the German Grid Initiative (D-Grid) [3] .  ... 
pmid:20543450 fatcat:3eztuc2365drrodyomuohyvw34

Health-e-Child : An Integrated Biomedical Platform for Grid-Based Paediatric Applications [article]

Joerg Freund, Dorin Comaniciu, Yannis Ioannis, Peiya Liu, Richard McClatchey, Edwin Morley-Fletcher, Xavier Pennec, Giacomo Pongiglione, Xiang ZHOU
2006 arXiv   pre-print
by setting up new technologies, clinical workflows, and standards.  ...  There is a compelling demand for the integration and exploitation of heterogeneous biomedical information for improved clinical practice, medical research, and personalised healthcare across the EU.  ...  Acknowledgements The authors thank the European Commission and their institutes for support and particularly acknowledge the contribution to this paper of the following Health-e-Child consortium members  ... 
arXiv:cs/0603036v2 fatcat:2qbhyrzjwbg7xfdzmmynvtjya4

Cyberinfrastructure for e-Science

T. Hey
2005 Science  
Similarly, biomedical informatics, which I define as the application of information technology and its tools in biomedical disciplines (1), mirrors this structure of the culture it serves: highly heterogeneous  ...  The developing Open Grid Service Architecture-Data Access Integration (OGSA-DAI) framework holds promise for adding semantics to the grid technology so that computable, semantic interoperability may be  ... 
doi:10.1126/science.1110410 pmid:15879209 fatcat:diesixv7pfggpirte5aycfwufi

Image processing methods and architectures in diagnostic pathology

Gloria Bueno, Oscar DĂŠniz, JesĂşs Salido, Marcial GarcĂ­a Rojo
2010 Folia Histochemica et Cytobiologica  
Grids are likely to have a deep impact on health related applications, and therefore they seem to be suitable for tissue-based diagnosis too.  ...  The implemented system is a joint application that mixes both Web and Grid Service Architecture around a distributed architecture for image processing.  ...  It has been shown how grids have been used for biomedical applications.  ... 
doi:10.2478/v10042-009-0116-x pmid:20430740 fatcat:yl25ecjpy5ecnopkesumk6paii

Dynamic Dedicated Server Allocation for Service Oriented Multi-Agent Data Intensive Architecture in Biomedical and Geospatial Cloud

Sudhansu Shekhar Patra, R. K. Barik
2014 International Journal of Cloud Applications and Computing  
Cloud computing has recently received considerable attention, as a promising approach for delivering Information and Communication Technologies (ICT) services as a utility.  ...  Service Oriented Architecture (SOA) and agent frameworks renders tools for developing distributed and multi agent systems which can be used for the administration of cloud computing environments which  ...  The image analysis, protein folding, data mining and gene sequencing are the important tools for biomedical applications and researchers.  ... 
doi:10.4018/ijcac.2014010105 fatcat:usnqjldnofaczcysipgvkqdtoi

Building a European biomedical grid on cancer: the ACGT Integrated Project

M Tsiknakis, D Kafetzopoulos, G Potamias, A Analyti, K Marias, A Manganas
2006 Studies in Health Technology and Informatics  
The ultimate objective of the ACGT project is the development of a European biomedical grid for cancer research, based on the principles of open access and open source, enhanced by a set of interoperable  ...  Acknowledgements The authors wish to express their gratitude to the whole of the ACGT consortium for their contributions with various ideas on which the ACGT project was developed.  ...  The infrastructure work in ACGT contains the following main components: BIOMEDICAL TECHNOLOGY GRID LAYER: This layer comprises the basic "Grid engine" for the scheduling and brokering of resources.  ... 
pmid:16823143 fatcat:y5z67zykjfeydiemgb6emr5oou

A review of medical grids and their direction - A Swiss/Japanese perspective

Toshiharu Nakai, Henning Müller, Epifanio Bagarinao, Koji Tomida, Yoshiaki Shiraishi, Marko Niinimaki
2015 International Journal of Research Studies in Computing  
In the future, merging these two may potentially solve inter-operation problems of grids, which have been limiting the propagation of biomedical grids.  ...  Bioinformatics and pharmaceutical design have been the major targets of grid applications in Japan.  ...  for grid applications.  ... 
doi:10.5861/ijrsc.2015.1109 fatcat:kn62alxwz5eyzkykck5rx2hfma

Measuring proteins' activity, quantity and function by multiplexed Bead-Arrays – Applications in biomedical research

Oliver Pötz
2014 EuPA Open Proteomics  
Assay systems based on this technology are used for the identification and quantification of proteins as well as for the study of protein interactions and activity.  ...  The resolution of 50,000 together and the application of feature extraction algorithms, dedicated for intact protein analysis, allowed the detection of more than 2000 proteoforms from a single 20 min analysis  ...  Sample grids for each gel were individually mapped to the ideal grid mix using Delta 2D analysis software (Decodon).  ... 
doi:10.1016/j.euprot.2014.09.014 fatcat:jlalj732ffgmnjwhojmiqgj7n4

A Conceptual Grid Architecture for Interactive Biomedical Applications

A. Tirado-Ramos, P.M.A. Sloot
2006 19th IEEE Symposium on Computer-Based Medical Systems (CBMS'06)  
This is the case in particular when using Grid infrastructures for supporting interactive biomedical applications.  ...  We apply our approach to a biomedical application for the simulation of blood flow, within a production Grid framework, and present our conclusions.  ...  Shulakov, as well as the CrossGrid integration team for their contributions to this work. References  ... 
doi:10.1109/cbms.2006.8 dblp:conf/cbms/Tirado-RamosS06 fatcat:p7kpjoir2feazms7f2oraoaax4

A roadmap for caGrid, an enterprise Grid architecture for biomedical research

Joel Saltz, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin Kurc, Philip Payne, Renato Ferreira, Beth Plale, Carole Goble, David Ervin, Ashish Sharma, Tony Pan (+8 others)
2008 Studies in Health Technology and Informatics  
Although the main application domain for caGrid is cancer research, the infrastructure provides a generic framework that can be employed in other biomedical research and healthcare domains.  ...  This program is established by the National Cancer Institute as a nationwide effort to develop enabling informatics technologies for collaborative, multi-institutional biomedical research with the overarching  ...  of biomedical informatics Grid middleware systems.  ... 
pmid:18560123 pmcid:PMC3292259 fatcat:mv6gnc5kbffdhawd44gy4ykxgq

Biomedical Knowledge Engineering Using a Computational Grid [chapter]

Marcello Castellano, Raffaele Stifini
2011 Biomedical Engineering, Trends in Electronics, Communications and Software  
(see for example Castellano at all, A bioinformatics knowledge discovery in text application for grid computing; A Workflow based Approach for Knowledge Grid Application; Intrusion Detection Using Neural  ...  Technologies of Bioengineering include: biomedical and biotechnological instruments (from the elementary components to the most complex hospital systems), prosthesis, robots for biomedical uses, artificial  ... 
doi:10.5772/13809 fatcat:y652zxxomnhlpeaecyf72cdhse

Grid-Enabled High-Throughput In Silico Screening Against Influenza A Neuraminidase

Hurng-Chun Lee, Jean Salzemann, Nicolas Jacq, Hsin-Yen Chen, Li-Yung Ho, Ivan Merelli, Luciano Milanesi, Vincent Breton, Simon C. Lin, Ying-Ta Wu
2006 IEEE Transactions on Nanobioscience  
Encouraged by the success of the first EGEE biomedical data challenge against malaria (WISDOM) [1], the second data challenge battling avian flu kicked off in April 2006 to identify new drugs for the potential  ...  for further biological analysis and testing.  ...  Biomedical Task Force and Embrace for its participation to the WISDOM deployment.  ... 
doi:10.1109/tnb.2006.887943 pmid:17181029 fatcat:6abw4jzwarhkhbexridjdgbigu
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