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Data Operation with Regular

Roshan Jagtap, Rajesh Bharti
2019 International Journal of Computer Applications  
Regular expressions have aided as the central workhorse of practical information withdrawal for several years.  ...  The tricky of mining knowledge from huge volumes of unstructured textual info has developed increasingly significant.  ...  We are additionally appreciative to the analyst for their important  ... 
doi:10.5120/ijca2019919303 fatcat:4tvokd4z5behvpqr5lghkio4eu

Survey of Natural Language Processing Techniques in Bioinformatics

Zhiqiang Zeng, Hua Shi, Yun Wu, Zhiling Hong
2015 Computational and Mathematical Methods in Medicine  
First, we aim to search for knowledge on biology, retrieve references using text mining methods, and reconstruct databases.  ...  For example, protein-protein interactions and gene-disease relationship can be mined from PubMed.  ...  to search for related knowledge in a literature database.  ... 
doi:10.1155/2015/674296 pmid:26525745 pmcid:PMC4615216 fatcat:z4txhlt4jfhmtlaje4mbrdnxme

Constructing a database for the relations between CNV and human genetic diseases via systematic text mining

Xi Yang, Zhuo Song, Chengkun Wu, Wei Wang, Gen Li, Wei Zhang, Lingqian Wu, Kai Lu
2018 BMC Bioinformatics  
Conclusions: In this paper, we use a systematic text mining method to construct a database for the relationship between CNVs and diseases.  ...  Based on that, we also developed a concise front-end to facilitate the analysis of CNV/disease association, providing a user-friendly web interface for convenient queries.  ...  Based on the earlier International Standards for Cytogenomic Arrays Consortium (ISCA), ClinGen [3] was initiated as a National Institute of Health funded program.  ... 
doi:10.1186/s12859-018-2526-2 fatcat:okaclo7w2nf5phu4ayu5tifpmy

Thinking PubMed: an Innovative System for Mental Health Domain

Maja Hadzic, Russel D'Souza, Fedja Hadzic, Tharam Dillon
2008 2008 21st IEEE International Symposium on Computer-Based Medical Systems  
Specific and targeted searches are very difficult with current search engines as they look for the specific string of letters within the text rather than its meaning.  ...  Furthermore, the Thinking PubMed analyzes and links the retrieved information, and extracts hidden patterns and knowledge using data mining algorithms.  ...  For example, searching for "chair" returns conference program chair, arm chair, wheelchair, electric chair, professorial chair etc.  ... 
doi:10.1109/cbms.2008.20 dblp:conf/cbms/HadzicDHD08 fatcat:aanc6fx3ebaa3k42ras7nb4cee

The Treasury Chest of Text Mining: Piling Available Resources for Powerful Biomedical Text Mining

Nícia Rosário-Ferreira, Catarina Marques-Pereira, Manuel Pires, Daniel Ramalhão, Nádia Pereira, Victor Guimarães, Vítor Santos Costa, Irina S. Moreira
2021 BioChem  
This review aims to gather the leading tools for biomedical TM, summarily describing and systematizing them. We also surveyed several resources to compile the most valuable ones for each category.  ...  When applied to biomedical literature, text mining is named biomedical text mining and its specificity lies in both the type of analyzed documents and the language and concepts retrieved.  ...  PTC is commonly used in biocuration support, gene prioritization, genetic disease analysis, literature-based knowledge discovery, or downstream text mining.  ... 
doi:10.3390/biochem1020007 fatcat:qve6xgoxuvbwzpqz6q45s7wlly

Automatic Web Data Extraction Based on Genetic Algorithms and Regular Expressions [chapter]

David F. Barrero, David Camacho, María D. R-Moreno
2009 Data Mining and Multi-agent Integration  
In this chapter we propose an updated state of the art revision of the problem of Web Data Extraction, and an Evolutionary Computation approach based on Genetic Algorithms and Regular Expressions to the  ...  These problems are related to the extraction, management and reuse of the huge amount of Web data available.  ...  For these reasons the next step is to use other evolutionary algorithms, such as Genetic Programming and Grammatical Evolution, that overcome this limitation.  ... 
doi:10.1007/978-1-4419-0522-2_9 fatcat:budya37wcza3pahhlbk4mo6wwu

A Grammatical Evolution Approach for Content Extraction of Electronic Commerce Website

Wei Qing-jin, Peng Jian-sheng
2013 Research Journal of Applied Sciences Engineering and Technology  
Web content extraction, a problem of identifying and extracting interesting information from Web pages, plays an important role in integrating data from different sources for advanced information-based  ...  In this paper, an approach and techniques of extracting electronic commercial information from the Web pages without any given template is investigated in a way of Grammatical Evolution (GE) method.  ...  GRAMMATICAL EVOLUTION Grammatical Evolution (GE) (O'Neill and Ryan, 2001) , a variant of Genetic Programming (GP) (Koza, 1992) , is an automatic programming evolutionary algorithm which includes a context  ... 
doi:10.19026/rjaset.5.4675 fatcat:y7zb6wny4vfwfgeqaustsmags4

Generating Drug-Gene Association for Vibrio Cholerae using Ontological Profile Similarity

C. Geethanjali, S. Bhanumathi
2016 Indian Journal of Science and Technology  
Based on the PMI scores, gene/protein profiles and drug are produced and candidate drug-gene/protein associations are constructed when evaluating the relevancy of their profiles.  ...  Text mining systems can analysis this vast scale information, shed light onto complex medication instruments and concentrate connection data that can bolster computational polypharmacology.  ...  Text mining is characterized as the programmed revelation of new, already obscure data from unstructured literary information 2 .  ... 
doi:10.17485/ijst/2016/v9i33/99620 fatcat:vyvtnlvmtrbwtpgv74ozffh5za

Evolving SQL Queries from Examples with Developmental Genetic Programming [chapter]

Thomas Helmuth, Lee Spector
2013 Genetic and Evolutionary Computation  
Large databases are becoming ever more ubiquitous, as are the opportunities for discovering useful knowledge within them.  ...  Evolutionary computation methods such as genetic programming have previously been applied to several aspects of the problem of discovering knowledge in databases.  ...  Acknowledgment We thank Gerome Miklau for advice regarding databases and the UCI Machine Learning Repository for use of the adult dataset; see  ... 
doi:10.1007/978-1-4614-6846-2_1 fatcat:m7kg7ljozzav5ghckxm4gqklry

A Review of Recent Advancement in Integrating Omics Data with Literature Mining towards Biomedical Discoveries

Kalpana Raja, Matthew Patrick, Yilin Gao, Desmond Madu, Yuyang Yang, Lam C. Tsoi
2017 International Journal of Genomics  
Text mining (also known as literature mining) is one of the commonly used approaches for automated generation of biological knowledge from the huge number of published articles.  ...  The managing, storing, and analyzing of this big data have been a great challenge for the researchers, especially when moving towards the goal of generating testable data-driven hypotheses, which has been  ...  Acknowledgments The authors acknowledge the support from the Undergraduate Research Opportunity Program (UROP) from the University of Michigan, the Dermatology Foundation, the Arthritis National Research  ... 
doi:10.1155/2017/6213474 pmid:28331849 pmcid:PMC5346376 fatcat:7yhwtsgyqndabcrhpx7uxsx7da

Engaging high school students in neuroscience research -through an e-internship program

Wim E Crusio, Cynthia Rubino, Anna Delprato
2017 F1000Research  
All research, teaching, and communication is done online using open access databases and webtools, a learning management system, and Google apps.  ...  In this article, we describe the design and implementation of an e-internship program that BioScience Project offers high school students over the summer.  ...  Based on the student feedback in 2015, the internship instruction was revised for clarity using step-by-step annotated screenshots together with one-on-one tutorials via video conferencing for each database  ... 
doi:10.12688/f1000research.10570.2 pmid:28299187 pmcid:PMC5302143 fatcat:jz5dwxtikvd3fhox7cqmp6i5vi

Comparative Analysis and Survey of Ant Colony Optimization based Rule Miners

Zulfiqar Ali, Waseem Shahzad
2017 International Journal of Advanced Computer Science and Applications  
There are various approaches proposed for the discovery of classification rules like Artificial Neural Networks, Genetic Algorithm, Evolutionary Programming, SVM and Swarm Intelligence.  ...  For the performance analysis, Myra Tool is used for experiments on the 18 public datasets (available on the UCI repository).  ...  ACKNOWLEDGMENT This research work is sponsored by the Higher Education Commission (HEC) of Pakistan in the form of Scholarship for the PhD program. We are thankful to HEC Pakistan.  ... 
doi:10.14569/ijacsa.2017.080108 fatcat:t3ccp2x5jneizjqryjw3cr3i5e

The Noun Phrase: Diversity in Dutch DP Design (DiDDD)

Marjo Van Koppen, Norbert Corver, Huib Kranendonk, Mirjam Rigterink
2007 Nordlyd: Tromsø University Working Papers on Language & Linguistics  
The empirical basis for the study of minimal syntactic variation are language systems that are (genetically and historically) very closely related.  ...  You can search this database by (i) looking for concrete bits of data.  ... 
doi:10.7557/12.90 fatcat:fcuodlksvnf5rfb2pf4wvpaehe

Mathematical Tools of Soft Computing 2014

Ker-Wei Yu, Yang Xu, Jer-Guang Hsieh
2015 Mathematical Problems in Engineering  
In recent years, grammatical evolution has been used as a representation of genetic programming, which has successfully been applied in many optimization problems.  ...  The FFLP is converted into a multiobjective linear programming (MOLP) according to the order relation for comparing the LR at fuzzy numbers.  ...  Acknowledgments We wish to express our sincere appreciation to the authors for their excellent contributions. The hard work of all reviewers is greatly acknowledged.  ... 
doi:10.1155/2015/234176 fatcat:wswu5kwc35d3xedlkbtycstrum

En route to artificial intelligence, software learns language

P.F. Gorder
2006 Computing in science & engineering (Print)  
to that base.  ...  Many linguists who believe that we are born with grammar already hardwired in our brains-that we all hold a kind of universal knowledge base for language, and the words we learn as we grow are just refinements  ...  Adios has more immediate applications for data mining and bioinformatics.  ... 
doi:10.1109/mcse.2006.5 fatcat:nwbofgzuxrdjtareb6kblsdytm
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