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For performing the calculations, we used the MDGRAPE-3 system-a special-purpose computer system for molecular dynamics simulations. ... 1 We have achieved a sustained performance of 55 TFLOPS for molecular dynamics simulations of the amyloid fibril formation of peptides from the yeast Sup35 in an aqueous solution. ... The authors also thank Japan SGI Inc. for the system support. ...doi:10.1145/1188455.1188506 dblp:conf/sc/NarumiOOKSFYHFTI06 fatcat:7yob5sfdprfszmgyrstvusbty4