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Gordon Bell finalists II---A 55 TFLOPS simulation of amyloid-forming peptides from yeast prion Sup35 with the special-purpose computer system MDGRAPE-3

Tetsu Narumi, Makoto Taiji, Mitsuru Ikei, Yousuke Ohno, Noriaki Okimoto, Takahiro Koishi, Atsushi Suenaga, Noriyuki Futatsugi, Ryoko Yanai, Ryutaro Himeno, Shigenori Fujikawa
2006 Proceedings of the 2006 ACM/IEEE conference on Supercomputing - SC '06  
For performing the calculations, we used the MDGRAPE-3 system-a special-purpose computer system for molecular dynamics simulations.  ...  1 We have achieved a sustained performance of 55 TFLOPS for molecular dynamics simulations of the amyloid fibril formation of peptides from the yeast Sup35 in an aqueous solution.  ...  The authors also thank Japan SGI Inc. for the system support.  ... 
doi:10.1145/1188455.1188506 dblp:conf/sc/NarumiOOKSFYHFTI06 fatcat:7yob5sfdprfszmgyrstvusbty4