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GonadSAGE: a comprehensive SAGE database for transcript discovery on male embryonic gonad development

T.-L. Lee, Y. Li, H.-H. Cheung, J. Claus, S. Singh, C. Sastry, O. M. Rennert, Y.-F. C. Lau, W.-Y. Chan
<span title="2009-12-21">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wmo54ba2jnemdingjj4fl3736a" style="color: black;">Bioinformatics</a> </i> &nbsp;
GonadSAGE is the first publicly available webbased SAGE database on male gonad development that covers six male mouse embryonic gonad stages, including E10.5, E11.5, E12.5, E13.5, E15.5 and E17.5.  ...  It represents an integrated platform that leads to a better understanding of male gonad development, and allows discovery of related novel targets and regulatory pathways.  ...  GonadSAGE is the first public interactive database that contains transcriptome information on male embryonic gonad development.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btp695">doi:10.1093/bioinformatics/btp695</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/20028690">pmid:20028690</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2852216/">pmcid:PMC2852216</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xdpmqv3haja37hnl7f7d7cnvga">fatcat:xdpmqv3haja37hnl7f7d7cnvga</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190307102611/http://pdfs.semanticscholar.org/d529/9f48163b66511ae1f58d280b1ac8f803f4d4.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d5/29/d5299f48163b66511ae1f58d280b1ac8f803f4d4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btp695"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2852216" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The bioinformatics tool box for reproductive biology

Michael Primig
<span title="">2012</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2hsw6h7ajnhunhtep2vw5jb2qe" style="color: black;">Biochimica et Biophysica Acta - Molecular Basis of Disease</a> </i> &nbsp;
This review outlines database projects and online analysis tools useful for life scientists in general and discusses in detail selected projects that have specifically been developed for researchers and  ...  given target genome and RNA-Seq, a method based on ultra-high throughput DNA sequencing, enable us to study noncoding and protein-coding transcripts with unprecedented precision and depth at a reasonable  ...  Collin and A. Roult at Genouest for GermOnline and GPSy system administration.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.bbadis.2012.05.018">doi:10.1016/j.bbadis.2012.05.018</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22687534">pmid:22687534</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rjlfosfypndzladmwg5dcp3444">fatcat:rjlfosfypndzladmwg5dcp3444</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171003151914/http://publisher-connector.core.ac.uk/resourcesync/data/elsevier/pdf/cdf/aHR0cDovL2FwaS5lbHNldmllci5jb20vY29udGVudC9hcnRpY2xlL3BpaS9zMDkyNTQ0MzkxMjAwMTM0Mg%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/eb/fa/ebfaefda575ff457e78abdb96e2b2c526ac61c5d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.bbadis.2012.05.018"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

The Interplay of Coding and Non-Coding Regulations in Mouse Spermatogenesis

Alfred Chun Shui LUK
<span title="">2013</span> <i title="OMICS Publishing Group"> Reproductive System &amp; Sexual Disorders </i> &nbsp;
age, which lasts for more than a half of male lifespan.  ...  Development of male gametes in mammals is regarded as one of the most efficient biological processes, which is characterized by a continuous production of sperms from puberty till the end of reproductive  ...  We applied SAGE to examine the transcriptomes of male germ cells [63] and gonads [64] , where all data are accessible through GermSAGE [65] and GonadSAGE [66] databases.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4172/2161-038x.s1-006">doi:10.4172/2161-038x.s1-006</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/reyl2bmoprfsvolpdplk5ultr4">fatcat:reyl2bmoprfsvolpdplk5ultr4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180723151641/https://www.omicsonline.org/the-interplay-of-coding-and-non-coding-regulations-in-mouse-spermatogenesis-2161-038X.S1-006.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4a/1b/4a1bc78412bd9d171bb0b758fddf65d129b09cb5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4172/2161-038x.s1-006"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>