Filters








53 Hits in 0.69 sec

DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides

Malak Pirtskhalava, Andrei Gabrielian, Phillip Cruz, Hannah L. Griggs, R. Burke Squires, Darrell E. Hurt, Maia Grigolava, Mindia Chubinidze, George Gogoladze, Boris Vishnepolsky, Vsevolod Alekseyev, Alex Rosenthal (+1 others)
2016 Nucleic Acids Research  
Antimicrobial peptides (AMPs) are anti-infectives that may represent a novel and untapped class of biotherapeutics. Increasing interest in AMPs means that new peptides (natural and synthetic) are discovered faster than ever before. We describe herein a new version of the Database of Antimicrobial Activity and Structure of Peptides (DBAASPv.2, which is freely accessible at http://dbaasp.org). This iteration of the database reports chemical structures and empirically-determined activities (MICs,
more » ... C50, etc.) against more than 4200 specific target microbes for more than 2000 ribosomal, 80 non-ribosomal and 5700 synthetic peptides. Of these, the vast majority are monomeric, but nearly 200 of these peptides are found as homo-or heterodimers. More than 6100 of the peptides are linear, but about 515 are cyclic and more than 1300 have other intra-chain covalent bonds. More than half of the entries in the database were added after the resource was initially described, which reflects the recent sharp uptick of interest in AMPs. New features of DBAASPv.2 include: (i) user-friendly utilities and reporting functions, (ii) a 'Ranking Search' function to query the database by target species and return a ranked list of peptides with activity against that target and (iii) structural descriptions of the peptides derived from empirical data or calculated by molecular dynamics (MD) simulations. The three-dimensional structural data are critical components for understanding structure-activity relationships and for design of new antimicrobial drugs. We created more than 300 high-throughput MD simulations specifically for inclusion in DBAASP. The resulting structures are described in the database by novel trajectory analysis plots and movies. Another 200+ DBAASP entries have links to the Protein DataBank. All of the structures are easily visualized directly in the web browser.
doi:10.1093/nar/gkw243 pmid:27060142 pmcid:PMC4994862 fatcat:rwvtrepkobdl7fdrjofjpayx2u

Page 2715 of Mathematical Reviews Vol. , Issue 2004c [page]

2004 Mathematical Reviews  
CE Se Cpmertcree, ONG Gee 5. so heen set ad eaee Gentz, Barbara van der Genugten, Ben Georg, Kurt George, Alan George, Andrew J. T. . Georgiadis, Leonidas ................ Georgiev, Pando Gr.  ...  Patrick 83096 Gomolndae Go. 2.025.008. 81318,81320 Gogoladze, Ilia ...... See Gogoladze, I. G Gohari, Peyman Goins, Edray Herber Goj, Sonja Gok, Omer CONOR Gs «oan inicnaitoiecnast we Gol'dberg, A.  ... 

Frontmatter

2014 Georgian Mathematical Journal  
Georg-Martin, Unternehmens-Systemberater, Stadtbergen; Cram, Maike, Berlin; Cram, Jens, Mannheim; Cram, Ingrid, Betriebsleiterin, Tuxpan / Michoacan (Mexiko); Cram, Sabina, Mexico, DF (Mexiko); Cram, Silke  ...  Chuang-Xin Chen, Zong-Xuan Chen Shared values for di erences and Borel exceptional values 57 Larry Gogoladze, Vakhtang Tsagareishvili Absolute convergence of multiple Fourier-Haar series 69 Dinu Teodorescu  ... 
doi:10.1515/gmj-2014-frontmatter1 fatcat:c4d4y3fbhvcu3lxkhcvry5toam

Page 2076 of Mathematical Reviews Vol. , Issue 97C [page]

1997 Mathematical Reviews  
EE Acclecanty sn iuiies See George, Alan George, Alan George, E. Olusegun Georgescu, George Georgieva, A. I. Gerasimov, V. N. rrr ee Gerrard, R. Gersten, S. M.  ...  Gogoladze, L. Gohberg, I. Géhmann, Frank Golan, Jonathan S. Goldberg, David E. Goldberg, Robert R. Goldie, Charles M. Goldin, Gerald A.  ... 

Page 294 of Mathematical Reviews Vol. 5, Issue 11 [page]

1944 Mathematical Reviews  
George, A. On the problem of interval estimation. Geppert, M.-P. Ober die Alterskorrektur von Merkmalshaufigkeiten in der Erbstatistik.  ...  Gogoladze, V. G. The Fourier integral and functionaily invariant solu- tions of the wave equation in n-dimensional space. Goldberg, M. New five-bar and six-bar linkages in three dimensions.  ... 

Page 981 of Mathematical Reviews Vol. 40, Issue 4 [page]

1970 Mathematical Reviews  
E. .......... 4791 RTE occ cccs apeee sé 4392 | Gogoladze,L.D. ........ 4668 | Henderson, David W. 4975,4976 | Johnson, George W. ...... 5309 Fahim, Gussein .......... 4998 | Gohberg,I.C. ........... 4794  ...  K. .... 4452, 4473 Ee sos ol scons o 4387 | Green, George .......... *4075 | Horadam, E.M. ......... 4198 | Kanold, H.  ... 

Page 4807 of Mathematical Reviews Vol. , Issue 89H [page]

1989 Mathematical Reviews  
Gelenbe, Erol IED ciicpustenprncestndaonial 32028 Gelman, Alex SE TRIED. citvincmoasndendeaedanend 32010 sR ee 3 11082 SIA: enctianiubeeresectadbaualea 49025 Gensemer, Susan H. .................. 90013 George  ...  Riidiger 13019 ER ES 46024 Godinho, Pedro Henrique ts IIE dhnncabascssccsnccies 92028 GS cccccorscccdeces 55018,57023 REED cntccssasennandnnupesbelee See 01028 IIE, insiondvcadisennscchainiin’ 81083 Gogoladze  ... 

Page 1292 of Mathematical Reviews Vol. , Issue 85c [page]

1985 Mathematical Reviews  
Gogala, Borut Gogoladze, L. D. Goicoechea, L. J. ..... Gokieli, L. P. .... Golda, Z. Goldman, André Goldman, S. R. ....... 82046 Golembo, Z. B. .  ...  Graham, George Graham-Eagle, James Gramchev, T. V. 35002 ,35056 Grandell, Jan Gray, Alfred Grayson, R. J. ........ Grebogi, Celso Green, A. E. Green, B. Greenberg, John L.  ... 

Page 3886 of Mathematical Reviews Vol. , Issue 86h [page]

1986 Mathematical Reviews  
V. ... 35008 Genest, Christian Geoghegan, Ross George, Alan Georgiacodis, Michael A. Georgiev, V.S. .......  ...  Gogoladze, L. D. Gogolla, Martin 68109,68125 Gohberg, I. 15018 Goldberg, Moshe S. .. 06030 Goldbeter, A. ......... Goldin, Gerald A. Goldman, Ronald N. Goldstein, B. N. ...... Goldstein, Richard Z.  ... 

Page 6029 of Mathematical Reviews Vol. , Issue 2001H [page]

2001 Mathematical Reviews  
George, Claude D. George, Edward I. ....... Georgescu, Vladimir Georgiev, K. A. .......... Georgiev, L. $. ........... Georgiev, Pando Gr.  ...  onus sanienerseieinwen 62042 I WISE tino cccccexcesisasgnesc¥e 60017 OS call EERE ae ee = 82061 SI IEEE wba scecessnccesdacs 49013 Goerdt, Andreas ..................... 68055 Goffin, Jean-Louis .. 90041 Gogoladze  ... 

Page 4729 of Mathematical Reviews Vol. , Issue 85j [page]

1985 Mathematical Reviews  
TOs Bs cccocccascene Ss Mb cewdssdsnee Georgescu, George Gera, Milan Gérardin, Khyra See Laméche-Gérardin, Khyra Gerber, Hans U. Gergel, T.  ...  W. 30078-30079 Ellingsrud, Geir Elliott, George A. 46106,46120 El Malek, Alfy Abd 17034 Elmroth, Tony El-Owaidy, H. ee Emelichev, V. Emel’ yanov, S.  ... 

Page 4968 of Mathematical Reviews Vol. , Issue 85k [page]

1985 Mathematical Reviews  
Lorentz, George G. (1-TX) 85k:42001 Convergence theorems for polynomials with many zeros Math. Z. 186 (1984), no. 1, 117-123.  ...  Szalay (Szeged) Gogoladze, L. D. 85k:42003 On a problem of L. Leindler concerning strong approximation by Fourier series and Lipschitz classes. Anal. Math. 9 (1983), no. 3, 169-175.  ... 

Page 6011 of Mathematical Reviews Vol. , Issue 2000h [page]

2000 Mathematical Reviews  
Gogoladze, L ‘ Gohberg, I. ........ Géhmann, F. Gokhman, A. O. Goldberg, L.  ...  Gottlob, Georg Gottschalk, Harald Gotz, M. Gotz, Mario Goudas, I rene Gould, Nicholas lan Mark Gourion, Catherine . Gouy, Xavier Govaerts, W. Gozdziewski, Krzysztof Graber, T. ...  ... 

Page 3739 of Mathematical Reviews Vol. , Issue 93g [page]

1993 Mathematical Reviews  
Gogoladze (Tbilisi) 42C Nontrigonometric Fourier analysis See also 26010, 30007, 33007, 41015, 42002, 47019. 93g:42015 42C05 33C45 46E35 Alfaro, M. [Alfaro, Manuel] (E-ZRGZ); Marcellan, F.  ...  Folland (1-WA) 42C Nontrigonometric Fourier analysis 932:42020 93g:42017 42C05 33C45 42C10 Gasper, George (1-NW); Trebels, Walter (D-DARM) On necessary multiplier conditions for Laguerre expansions.  ... 

Page 250 of Mathematical Reviews Vol. 46, Issue 1 [page]

1973 Mathematical Reviews  
Godbillon, Claude Gogoladze, L. D. ......... OT SN |” a Cem perg, MI... o6¢:610:53 Gol’dberg, V. V. Goldschmidt, Hubert Ae En aes ee Golubickii, B. M. SS | Se eee oe A ee ee Gordeziani, D. G.  ...  TS Ty ae ees Seen Geman, Donald Geoffrion, Arthur M. . 1355, 1356 IBD AD, 5 sin 00 .0'6 orate 0 Dies 1266 Georgescu, George Georgiev, N.N. .......... GeraStenko, S. M. ........ Germeier, Ju.  ... 
« Previous Showing results 1 — 15 out of 53 results