A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Filters
DeOri: a database of eukaryotic DNA replication origins
2012
Bioinformatics
Preserved Fulltext
However, only few eukaryotic replication origins were characterized not long ago; nevertheless, recent genome-wide approaches have boosted the number of mapped replication origins. ...
148, 348 and 6184 for humans, mice, Arabidopsis thaliana, Kluyveromyces lactis, Schizosaccharomyces pombe and Drosophila melanogaster, respectively. ...
Dutta and Dr Kumar for providing the positions of 150 replication origins in human. We would also like to thank Prof. Masukata and Prof. ...
doi:10.1093/bioinformatics/bts151
pmid:22467915
fatcat:juh4ofkaijcmrn3z4rpwfianbe
G4 Structures in Control of Replication and Transcription of rRNA Genes
2020
Frontiers in Plant Science
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Here, we present examples of rDNA promoter regions with extremely high potential to form G4 in two model plants, Arabidopsis thaliana and Physcomitrella patens. ...
ancient origin of G4 as a regulatory module. ...
RTEL1 also promotes genome-wide replication through its interaction with PCNA, increasing replication fork stability, extension rates, and origin usage (Vannier et al., 2013) . ...
doi:10.3389/fpls.2020.593692
pmid:33133121
pmcid:PMC7579416
fatcat:ptsx2pd4hvb3tnlzjdl66pfdva
Comparative Genomics of Brassica oleracea and Arabidopsis thaliana Reveal Gene Loss, Fragmentation, and Dispersal after Polyploidy
2006
The Plant Cell
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
We found evidence for the frequent insertion of gene fragments of nuclear genomic origin and identified four apparently intact genes in noncollinear positions in the B. oleracea and A. thaliana genomes ...
We sequenced 2.2 Mb representing triplicated genome segments of Brassica oleracea, which are each paralogous with one another and homologous with a segmentally duplicated region of the Arabidopsis thaliana ...
Biotechnology and Biological Sciences Research Council competitive support grant to I.B. and M.T. and by U.S. National Science Foundation Cooperative Agreement DBI-9813586 to TIGR. ...
doi:10.1105/tpc.106.041665
pmid:16632643
pmcid:PMC1475499
fatcat:ntwrlwkkf5dbzjt74fkrqadbq4
Codon usage pattern and predicted gene expression in Arabidopsis thaliana
2019
Gene: X
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2021; you can also visit the original URL.
The file type is application/pdf.
The codon usage pattern of genes in Arabidopsis thaliana genome is a classical topic for plant biologists for its significance in the understanding of molecular plant biology. ...
In this study, a critical analysis of predicted highly expressed (PHE) genes in Arabidopsis thaliana has been performed using MRCBS as a numerical estimator of gene expression level. ...
Declaration of interests We, the authors declare that we have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper. ...
doi:10.1016/j.gene.2019.100012
pmid:32550546
pmcid:PMC7286098
fatcat:24azyha5rradjbd4lpgfkttzde
Application of Genome Wide Association and Genomic Prediction for Improvement of Cacao Productivity and Resistance to Black and Frosty Pod Diseases
2017
Frontiers in Plant Science
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Genome-wide association (GWA) was performed, and six markers were significantly associated with frosty pod disease resistance. ...
A panel of 148 improved cacao clones was assembled based on productivity and disease resistance, and phenotypic single-tree replicated clonal evaluation was performed for 8 years. ...
ACKNOWLEDGMENTS We would like to thank José Castillo and field workers at the trial locations for their contributions to data collection and maintenance of the plants in the field. ...
doi:10.3389/fpls.2017.01905
pmid:29184558
pmcid:PMC5694496
fatcat:omjn5n2vcbf5xbetkjxmk24a2i
Diversity and evolution of transposable elements in Arabidopsis
2014
Chromosome Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2015; you can also visit the original URL.
The file type is application/pdf.
Although first viewed solely as selfish, transposable elements are now known as important vectors to drive the adaptation and evolution of their host genome. ...
In plants, the need to adapt rapidly to changing environmental conditions is essential and is reflected, as will be discussed, by genome plasticity and an abundance of diverse, active transposon families ...
the new mil-
lennium: the publication of the first plant genome
sequence, Arabidopsis thaliana (Arabidopsis Genome ...
doi:10.1007/s10577-014-9418-8
pmid:24801342
fatcat:tn7ltrruajeafgfahinsymw6cy
Chloroplast research in the genomic age
2003
Trends in Genetics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2004; you can also visit the original URL.
The file type is application/pdf.
In A. thaliana, the protein content of the thylakoid lumen has been characterized by two-dimensional electrophoresis and mass spectrometry, as well as by genome-wide searches for the TAT motif. ...
These estimates are based on the computational identification of cTPs in the predicted protein-coding regions of the Arabidopsis genome. ...
Work in my laboratory is supported by grants of the Deutsche Forschungsgemeinschaft, the Bundesministerium fü r Bildung and Forschung, and the European Community. ...
doi:10.1016/s0168-9525(02)00003-3
pmid:12493248
fatcat:la3inpesgjb6xdy2atojdh63ge
Genomic Survey and Cold-Induced Expression Patterns of bHLH Transcription Factors in Liriodendron chinense (Hemsl) Sarg
2022
Forests
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2022; you can also visit the original URL.
The file type is application/pdf.
In this current study, we conducted, the genome-wide survey of bHLH transcription factors in Liriodendron chinense (Hemsl) Sarg., 91 LcbHLH family members were identified. ...
RNA-seq and real-time quantitative PCR analysis of LcbHLH members showed that the expression of LcbHLH35, 55, and 86 are up-regulated, and the expression of LcbHLH9, 20, 39, 54, 56, and 69 is down-regulated ...
The analysis of genome-wide replication, fragment replication, and tandem replication of gene family has a significant role in explaining the process of gene family expansion. ...
doi:10.3390/f13040518
fatcat:yej5azgyi5cspiri4h4jojiy74
Characterization and Evolution of Conserved MicroRNA through Duplication Events in Date Palm (Phoenix dactylifera)
2013
PLoS ONE
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
influenced by and diverged as a result of genomic duplication events. ...
MicroRNAs (miRNAs) are important regulators of gene expression at the post-transcriptional level in a wide range of species. ...
Acknowledgments We thank Qixing Huang in the Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Science for the suggestions in date palm miRNA analysis. ...
doi:10.1371/journal.pone.0071435
pmid:23951162
pmcid:PMC3738527
fatcat:qup3i2hhibbgpnkmkpnwodqnqi
A genome‐wide association study approach to the identification of candidate genes underlying agronomic traits in alfalfa ( Medicago sativa L.)
2019
Plant Biotechnology Journal
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
In the present study, we applied the GWAS approach to a collection of 322 alfalfa genotypes of diverse geographic origin to investigate marker-trait associations for nine agronomic traits characterized ...
reference genome sequences (Mt4.0 V1) and NCBI nucleotide acid databases. ...
and Technology Innovation Program of Chinese Academy of Agricultural Sciences (CAAS-XTCX2018020). ...
doi:10.1111/pbi.13251
pmid:31487419
fatcat:h5attqcenja6nehoqssojxothy
Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana
2011
BMC Evolutionary Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
The evolutionary origins of two thirds of the lineagespecific genes within the Arabidopsis thaliana genome are also identified. ...
origin in Arabidopsis thaliana. ...
The authors are thankful for reviewer comments on an earlier version of this manuscript and for advice offered by Dr Mary O'Connell, Dr Rachel Clifton and Prof. Cathal Seoighe. ...
doi:10.1186/1471-2148-11-47
pmid:21332978
pmcid:PMC3049755
fatcat:zxxbpbjo3vblhmlxxzhy4gkaly
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
2000
Nature
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2013; you can also visit the original URL.
The file type is application/pdf.
This work was supported by the National Science Foundation, the Department of Energy and the US Department of Agriculture. ...
Richards and S. Tabata for helpful contributions in completing the chromosome. ...
By contrast, the genomic organization of A. thaliana centromeres is not well characterized. ...
doi:10.1038/35048500
pmid:11130712
fatcat:dto43odkfrgepmdfxxx2xbnfky
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana
1999
Nature
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2004; you can also visit the original URL.
The file type is application/pdf.
This work was supported by the National Science Foundation, the Department of Energy and the US Department of Agriculture. ...
Richards and S. Tabata for helpful contributions in completing the chromosome. ...
By contrast, the genomic organization of A. thaliana centromeres is not well characterized. ...
doi:10.1038/45471
pmid:10617197
fatcat:kanpi6tpuveh3d5b34h67igl7q
Novel Genes Affecting the Interaction between the Cabbage Whitefly and Arabidopsis Uncovered by Genome-Wide Association Mapping
2015
PLoS ONE
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Genome-wide association (GWA) mapping is a useful tool to study the genetic architecture of traits, but has so far only had limited exploitation in studies of plant defense. ...
Here, we study the genetic architecture of defense against the phloem-feeding insect cabbage whitefly (Aleyrodes proletella) in Arabidopsis thaliana. ...
Acknowledgments We thank Richard Visser for advice on experimental design and GWA mapping and for valuable comments on an earlier version of the manuscript; Frank Becker for generation of seeds; Unifarm ...
doi:10.1371/journal.pone.0145124
pmid:26699853
pmcid:PMC4689410
fatcat:4b3hi2zzdrey5eilqekxpsztwe
Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand's high ultraviolet B radiation environment
2019
BMC Genomics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Pachycladon cheesemanii is a close relative of Arabidopsis thaliana and is an allotetraploid perennial herb which is widespread in the South Island of New Zealand. ...
To gain first insights into how Pachycladon copes with UV-B stress, we sequenced its genome and compared the UV-B tolerance of two Pachycladon accessions with those of two A. thaliana accessions from different ...
Christian Kappel (University of Potsdam, Potsdam, Germany) for providing infrastructure for bioinformatics analysis, Dr. Claudia Voelckel (MPI for Chemical Eology, Jena, Germany) and Dr. ...
doi:10.1186/s12864-019-6084-4
pmid:31718535
pmcid:PMC6849220
fatcat:helytwfhdvbqpcxcuupqsu6rua
« Previous
Showing results 1 — 15 out of 14,679 results