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The Gemina web interface provides metadata selection and retrieval of a pathogen's Infection Systems (Pathogen, Host, Disease, Transmission Method and Anatomy) and Incidents (Location and Date) along with ... The Gemina system (http://gemina.igs.umaryland .edu) identifies, standardizes and integrates the outbreak metadata for the breadth of NIAID category A-C viral and bacterial pathogens, thereby providing ... ACKNOWLEDGEMENTS The authors thank Matthew Davenport for his continue guidance and support of the Gemina project. ...doi:10.1093/nar/gkp832 pmid:19850722 pmcid:PMC2808878 fatcat:y4pap3wjqbaazhacqwrpu2k754
Journal of Healthcare Informatics Research
EpiK is designed to support agent-based modeling and analytics frameworks-aggregate models can be seen as special cases and are thus supported. ... As a result, it is important to develop scalable data management systems to store, manage and integrate these datasets. ... Schriml et al. provide the GeMIna system, that uses epidemiology metadata to identify infectious pathogens and their representative genomic sequences . ...doi:10.1007/s41666-017-0010-9 pmid:35415398 pmcid:PMC8982844 fatcat:m5d3lglydfh27pcdbx22icguay
It identifies references to infectious diseases by using a disease ontology. ... A system is described that automatically categorizes and classifies infectious disease incidence reports by type and geographic location, to aid analysis by domain experts. ... The authors wish to thank Adam Phillippy for his help with the ontology tagging module. ...doi:10.1109/icdew.2008.4498330 dblp:conf/icde/LiebermanSSS08 fatcat:tztpjwfxfbeu5ekrkfujut6gp4
The Environment Ontology (ENVO; www.environmentontology.org) is a community-led, open project which seeks to provide an ontology for specifying a wide range of environments relevant to multiple life science ... disciplines and, through an open participation model, to accommodate the terminological requirements of all those needing to annotate data using ontology classes. ... For example, the Genomic Metadata for Infectious Agents Database (GEMINA;  ) supports queries using ENVO classes, and the National Institute for Allergy and Infectious Diseases (NIAID) Bioinformatics ...doi:10.1186/2041-1480-4-43 pmid:24330602 pmcid:PMC3904460 fatcat:boxqxyq2pnen3nzboofx2dvsd4