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GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database

L. M. Schriml, C. Arze, S. Nadendla, A. Ganapathy, V. Felix, A. Mahurkar, K. Phillippy, A. Gussman, S. Angiuoli, E. Ghedin, O. White, N. Hall
2009 Nucleic Acids Research  
The Gemina database will provide a greater understanding of the interactions of viral and bacterial pathogens with their hosts and infectious diseases through in-depth literature text-mining, integrated  ...  The Gemina system (http://gemina.igs.umaryland .edu) identifies, standardizes and integrates the outbreak metadata for the breadth of NIAID category A-C viral and bacterial pathogens, thereby providing  ...  ACKNOWLEDGEMENTS The authors thank Matthew Davenport for his continue guidance and support of the Gemina project.  ... 
doi:10.1093/nar/gkp832 pmid:19850722 pmcid:PMC2808878 fatcat:y4pap3wjqbaazhacqwrpu2k754

EpiK: A Knowledge Base for Epidemiological Modeling and Analytics of Infectious Diseases

S.M.Shamimul Hasan, Edward A. Fox, Keith Bisset, Madhav V. Marathe
2017 Journal of Healthcare Informatics Research  
The data management framework links modeling workflow data and its metadata using a controlled vocabulary.  ...  EpiK is designed to support agent-based modeling and analytics frameworks-aggregate models can be seen as special cases and are thus supported.  ...  Schriml LM, Arze C, Nadendla S, Ganapathy A, Felix V, Mahurkar A, Phillippy K, Gussman A, Angiuoli S, Ghedin E, et al. (2010) GeMIna, Genomic metadata for infectious agents, a geospatial surveillance  ... 
doi:10.1007/s41666-017-0010-9 pmid:35415398 pmcid:PMC8982844 fatcat:m5d3lglydfh27pcdbx22icguay