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The urgency of wider adoption of one health approach for the prevention of a future pandemic

M. Nazmul Hoque, Golam Mahbub Faisal, Farhan Rahman Chowdhury, Amlan Haque, Tofazzal Islam
2022 International Journal of One Health  
The devastation caused by the COVID-19 pandemic teaches us to adopt a "One Health Approach (OHA)" to tackle a possible future pandemic through a concerted effort of the global scientific community, human  ...  In addition, this review article discusses the strategic framework of OHA and possible challenges to implement OHA in practice to prevent any future pandemics.  ...  Anwar Hossain, Vice-Chancellor, Jashore University of Science and Technology, Jashore-7408, Bangladesh for their scholastic opinion and support to prepare the review.  ... 
doi:10.14202/ijoh.2022.20-33 doaj:da49705513e3493e985b936e8ac88e58 fatcat:asmjc4agzrf7jbnryvgzonnzvu

Clam genome sequence clarifies the molecular basis of its benthic adaptation and extraordinary shell color diversity

Xiwu Yan, Hongtao Nie, Zhongming Huo, Jianfeng Ding, Zhenzhen Li, Lulu Yan, Liwen Jiang, Zhengqiang Mu, Huamin Wang, Xiangyu Meng, Peng Chen, Mengyan Zhou (+3 others)
2019 iScience  
A number of immune-related gene families are expanded in the R. philippinarum genome, such as TEP, C3, C1qDC, Hsp70, SABL, and lysozyme, which are potentially important for its stress resistance and adaptation  ...  to a coastal benthic life.  ...  All data were analyzed using the 2 -△△ Ct method. Data availability This genome project has been registered in NCBI under the BioProject accession PRJNA479743.  ... 
doi:10.1016/j.isci.2019.08.049 pmid:31574780 pmcid:PMC6831834 fatcat:lxyk7xjrungjdbci67aqdwkbb4

Investigation of Different Machine Learning Algorithms to Determine Human Sentiment Using Twitter Data

Golam Mostafa, East West University, Dhaka, Bangladesh, Ikhtiar Ahmed, Masum Shah Junayed
2021 International Journal of Information Technology and Computer Science  
Sentiment analysis of Twitter data is a very popular research work nowadays.  ...  Later a comparison between the achieved accuracies was showed.  ...  In the meantime, we found the Binary Cross Entropy framework for cost estimation to implement the value function.  ... 
doi:10.5815/ijitcs.2021.02.04 fatcat:3lv33737lvakdla7bacctkfh3u

Interrogating accessibility of telomeric sequences with FRET-PAINT: evidence for length-dependent telomere compaction

Golam Mustafa, Sajad Shiekh, Keshav Gc, Sanjaya Abeysirigunawardena, Hamza Balci
2021 Nucleic Acids Research  
We report single-molecule measurements where the accessibility of 24-144 nucleotide long human telomeric DNA molecules is interrogated by a short PNA molecule that is complementary to a single GGGTTA repeat  ...  These results are consistent with telomeres forming more compact structures at longer lengths, reducing accessibility of these critical genomic sites.  ...  ACKNOWLEDGEMENTS We thank Dr Luuk Loeff (Technical University of Delft, Netherlands) for sharing the Stepfinder program with us and for his help with its implementation.  ... 
doi:10.1093/nar/gkab067 pmid:33693934 pmcid:PMC8034622 fatcat:yp6hpmgeevhgrn3ccyc5jpolca

Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich's ataxia, and other rare iron-related diseases

Gloria C. Ferreira, Jenna Oberstaller, Renée Fonseca, Thomas E. Keller, Swamy Rakesh Adapa, Justin Gibbons, Chengqi Wang, Xiaoming Liu, Chang Li, Minh Pham, Guy W. Dayhoff II, Linh M. Duong (+12 others)
2019 F1000Research  
Conclusions: The purpose of this manuscript is to demonstrate the utility of a hackathon model to generate prototypes of generalizable tools for a given disease and train clinicians and data scientists  ...  We proposed a modified version of the National Center for Biotechnology Information's (NCBI) Hackathon-model to take full advantage of local expertise in building "Iron Hack", a rare disease-focused hackathon  ...  Participants' raw genomics data and environmental data are stored in a non-relational database, which has been proven to be more efficient than relational databases for storing and accessing genomic data  ... 
doi:10.12688/f1000research.19140.1 pmid:31824661 pmcid:PMC6894363 fatcat:ymvmmeowurbp5evedblsmqvhty

DNA Methylation in Cord blood as Mediator of the Association between Prenatal Arsenic Exposure and Gestational Age

Anne Bozack, Andres Cardenas, Quazi Quamruzzaman, Mahmuder Rahman, Golam Mostofa, David C. Christiani, Molly L. Kile
2018 Epigenetics  
We evaluated the association between arsenic and gestational age (GA) that was mediated through DNA methylation (DNAm) using data from a Bangladeshi birth cohort.  ...  Top loci identified in the discovery phase were then pyrosequenced in a second group (n = 569, validation phase).  ...  We are also very grateful to Dr Andres Houseman for his epigenetic expertise and insights into how to approach this analysis.  ... 
doi:10.1080/15592294.2018.1516453 pmid:30175652 pmcid:PMC6284783 fatcat:5oso2oms6vdbfkorjzsrnf7p2q

Functional Prediction of Hypothetical Proteins from Shigella flexneri and Validation of the Predicted Models by Using ROC Curve Analysis

Md. Amran Gazi, Sultan Mahmud, Shah Mohammad Fahim, Mohammad Golam Kibria, Parag Palit, Md. Rezaul Islam, Humaira Rashid, Subhasish Das, Mustafa Mahfuz, Tahmeed Ahmeed
2018 Genomics & Informatics  
The genome of Shigella flexneri was extensively analyzed and found 4,362 proteins among which the functions of 674 proteins, termed as hypothetical proteins (HPs) had not been previously elucidated.  ...  Here we have utilized a combination of the latest versions of databases to assign the precise function of HPs for which no experimental information is available.  ...  Supplementary material Supplementary data including eight tables can be found with this article online at 2018. 16.4.e26.  ... 
doi:10.5808/gi.2018.16.4.e26 pmid:30602087 pmcid:PMC6440662 fatcat:osdrth43bnaunahvrdtphz3jl4

Risk Factors for Norovirus Infections and Their Association with Childhood Growth: Findings from a Multi-Country Birth Cohort Study

Parag Palit, Rina Das, Md. Ahshanul Haque, Md. Mehedi Hasan, Zannatun Noor, Mustafa Mahfuz, Abu Syed Golam Faruque, Tahmeed Ahmed
2022 Viruses  
Non-diarrheal stools were collected from 1715 children enrolled in locations in a multi-county birth cohort study across eight different geographical locations and were assessed for norovirus genogroup  ...  Asymptomatic norovirus GI infections were negatively associated with monthly length-for-age Z score/LAZ (β = −0.53, 95% CI: −0.73, −0.50) and weight-for-age Z score/WAZ (β = −0.39, 95% CI: −0.49, −0.28  ...  Project (MAL-ED) as a collaborative project supported by the Bill and Melinda Gates Foundation, the Foundation for the National Institutes of Health, and the National Institutes of Health, Fogarty International  ... 
doi:10.3390/v14030647 pmid:35337054 pmcid:PMC8954848 fatcat:zjlblfjovffqldfrmug7iuy2je

Comparative proteomic analysis to annotate the structural and functional association of the hypothetical proteins of S. maltophilia k279a and predict potential T and B cell targets for vaccination

Md. Muzahid Ahmed Ezaj, Md. Sajedul Haque, Shifath Bin Syed, Md. Shakil Ahmed Khan, Kazi Rejvee Ahmed, Mst. Tania Khatun, S. M. Abdul Nayeem, Golam Rosul Rizvi, Mohammad Al-Forkan, Laila Khaleda, Jinn-Moon Yang
2021 PLoS ONE  
This bacterium can be a vital cause for death and different organ failures in immune-compromised, immune-competent, and long-time hospitalized patients.  ...  Then we separated the hypothetical proteins and searched for the conserved domain with a high confidence level and multi-server validation, which resulted in 24 such proteins.  ...  Junaid, Principal Investigator, Advanced Bioinformatics, Computational Biology and Data Science Laboratory, Bangladesh, for their technical supports.  ... 
doi:10.1371/journal.pone.0252295 pmid:34043709 fatcat:gr5lsbto4bgfjiebnocugf6tzu

Bioinformatic prediction and analysis of eukaryotic protein kinases in the rat genome

Julhash U. Kazi, Nuzhat N. Kabir, Jae-Won Soh
2008 Gene  
This bioinformatic study of the rat protein kinases provides a suitable framework for further characterization of the functional and structural properties of these protein kinases.  ...  Near completion of rat genome sequencing project enables the evaluation of a near complete set of rat protein kinases.  ...  Appendix A. Supplementary Data The supplementary data associated with this article can be found in the online version.  ... 
doi:10.1016/j.gene.2007.12.003 pmid:18201844 fatcat:dpmlggjrrnh5ncvbvmyh3n4jcq

m6AGE: A Predictor for N6-Methyladenosine Sites Identification Utilizing Sequence Characteristics and Graph Embedding-Based Geometrical Information

Yan Wang, Rui Guo, Lan Huang, Sen Yang, Xuemei Hu, Kai He
2021 Frontiers in Genetics  
useful tool for m6A site prediction.  ...  The existing biological experimental methods for identifying m6A sites are time-consuming and costly.  ...  DATA AVAILABILITY STATEMENT Publicly available datasets were analyzed in this study.  ... 
doi:10.3389/fgene.2021.670852 pmid:34122525 pmcid:PMC8191635 fatcat:6oeqvv5aujdrzdgsrrpd7u35ay

An Intermediate Data-driven Methodology for Scientific Workflow Management System to Support Reusability [article]

Debasish Chakroborti
2020 arXiv   pre-print
In this thesis first we propose an intermediate data management scheme for a SWfMS.  ...  Consequently, in our fourth study, We have done several experiments for analyzing the performance and exploring the effectiveness of the technique in a SWfMS for various environments.  ...  web technologies and Flask (A Python micro-framework) web framework.  ... 
arXiv:2010.14057v1 fatcat:fo5jaqdzavdmzbacxpd5wtj6yy

International Conference on Emerging Technology in Computing, Communication and Electronics

2020 2020 Emerging Technology in Computing, Communication and Electronics (ETCCE)  
In this paper, the main focus is to separate different frequency band from is used for EEG acquisition and for analyzing the signal data, a virtual platform MATLAB has implemented which has been proved  ...  This study gives a visualized time left for how long an engine lifetime is present, accordingly, the system we follow is setting up an appropriate mechanism by collecting data with IoT, and analyzing into  ...  Quantitative method has been chosen as a research method in this study where user interaction data from the LMS log is been used for engagement analysis.  ... 
doi:10.1109/etcce51779.2020.9350902 fatcat:2drvbgkrmjabfeawuw33hui6yy

Expression of the sFLT1 Gene in Cord Blood Cells Is Associated to Maternal Arsenic Exposure and Decreased Birth Weight

Sylvie Remy, Eva Govarts, Liesbeth Bruckers, Melissa Paulussen, Britt Wens, Elly Den Hond, Vera Nelen, Willy Baeyens, Nicolas van Larebeke, Ilse Loots, Isabelle Sioen, Greet Schoeters (+1 others)
2014 PLoS ONE  
The protein product of sFLT1 is a scavenger of vascular endothelial growth factor (VEGF) in the extracellular environment and plays a key role in the inhibition of placental angiogenesis.  ...  The model was adjusted for child's sex, maternal smoking during pregnancy, gestational age, and parity.  ...  Analyzed the data: SR EG LB. Contributed reagents/materials/analysis tools: WB. Wrote the paper: SR EG GS.  ... 
doi:10.1371/journal.pone.0092677 pmid:24664213 pmcid:PMC3963915 fatcat:gr2gz4pmobafjhjfso3ewnfocu


2022 2022 International Conference on Decision Aid Sciences and Applications (DASA)  
A maximum of 92.90% classification accuracy is obtained using the features of IMF-4 with 10-fold cross-validation. The results conclude that the proposed method can detect AD patients efficiently.  ...  As such, this research presents a bioinformatics tool based on whole genome sequence (WGS) data called "FSALE" which can rapidly analyze a group of genome assemblies in a short period of time and provide  ...  The data were analyzed using IBM SPSS statistics version 26 software.  ... 
doi:10.1109/dasa54658.2022.9765271 fatcat:ttqppf4j3navnaxe653mrzmezi
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