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GFF3toEMBL: Preparing annotated assemblies for submission to EMBL

Andrew J. Page, Sascha Steinbiss, Ben Taylor, Torsten Seemann, Jacqueline A. Keane
2016 Journal of Open Source Software  
We address this by providing GFF3toEMBL, which converts the output of the most commonly used automatic annotation tool, Prokka (Seemann 2014) , and converts it to a format suitable for submission to EMBL  ...  all annotated genomes in EMBL/GenBank .  ... 
doi:10.21105/joss.00080 fatcat:qyudkhjstvh47f2dxmewr7ygqm

Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides

Guy Leonard, Aurélie Labarre, David S. Milner, Adam Monier, Darren Soanes, Jeremy G. Wideman, Finlay Maguire, Sam Stevens, Divya Sain, Xavier Grau-Bové, Arnau Sebé-Pedrós, Jason E. Stajich (+5 others)
2018 Open Biology  
Eukaryotic microbes have three primary mechanisms for obtaining nutrients and energy: phagotrophy, photosynthesis and osmotrophy.  ...  We use genome comparisons, drug sensitivity analysis and high-throughput culture arrays to investigate the ancestry of oomycete/pseudofungal characteristics, demonstrating that many of the genetic features  ...  Karling, who did much to improve our understanding of the microbial tree of life.  ... 
doi:10.1098/rsob.170184 pmid:29321239 pmcid:PMC5795050 fatcat:7djkmnq6indnbegcnl4sa2ktly