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Enhancing Segmentation Approaches from Super Pixel Division Algorithm to Hidden Markov Random Fields with Expectation Maximization (HMRF-EM)

Christo Ananth, S. Amutha, K. Niha, Djabbarov Botirjon Begimovich
2022 Zenodo  
Based on the Hidden Markov random field, Automatic liver tumor detection in CT scans is possible using hidden Markov random fields (HMRF-EM).  ...  Because it would involve automation, standardisation, and the incorporation of complete volumetric information, accurate automatic liver tumor segmentation would substantially affect the processes for  ...  This technique uses shape constraints derived from Hessian and is founded primarily on graph cuts as its underlying structure.  ... 
doi:10.5281/zenodo.6857037 fatcat:euzm66knundl7eofffwnlluavy

Multimodel Image Segmentation and Classification by MAP based graph cut and Improved VGG16

2020 International Journal of Engineering and Advanced Technology  
The segmentation algorithm is a map (map a posterior) based graph cut method The segmentation results are compared with the existing methods like (FCM) Fuzzy C Means and KFCM Kernel Fuzzy C Means and it  ...  Brain tumor, Stroke, and Hemorrhage are the commonly prevailing disease and comprise more complexity in diagnosing where there arises the confusion in case of high grade or low-grade tumor and acute or  ...  The brain image to be examined is subjected to preprocessing followed by MAP based Graph cut segmentation method.  ... 
doi:10.35940/ijeat.d7472.069520 fatcat:v74hct6av5d7dcok7kfuwvb2x4

Random walk and graph cut based active contour model for three-dimension interactive pituitary adenoma segmentation from MR images

Min Sun, Xinjian Chen, Zhiqiang Zhang, Chiyuan Ma, Martin A. Styner, Elsa D. Angelini
2017 Medical Imaging 2017: Image Processing  
By using the GCACM method, the segmentation task is formulated as an energy minimization problem by a hybrid active contour model (ACM), and then the problem is solved by the graph cuts method.  ...  In this paper, we propose an interactive method to segment the pituitary adenoma from brain MR data, by combining graph cuts based active contour model (GCACM) and random walk algorithm.  ...  Conclusions The proposed method is a comprehensive 3-D method to interactively segment pituitary adenoma by combining the RW method, the graph cuts, and the hybrid ACM, making fully use of their advantages  ... 
doi:10.1117/12.2253990 dblp:conf/miip/SunCZM17 fatcat:6w3ai4a5pbbhvjrufzgffb4lf4

Survey of Brain Tumor Segmentation Techniques on Magnetic Resonance Imaging

Messaoud Hameurlaine, Abdelouahab Moussaoui
2019 Nano Biomedicine and Engineering  
Brain tumor extraction is challenging task because brain image and its structure are complicated that can be analyzed only by expert physicians or radiologist.  ...  Brain tumor detection and segmentation is one of the most challenging and time consuming task in medical image processing.  ...  Segmenting tumors by making use of geometric deformable models or level sets, permits the development of fully automatic and highly accurate segmentation approaches.  ... 
doi:10.5101/nbe.v11i2.p178-191 fatcat:gh5jemeth5hapa62bomn7ypwgm

A survey of MRI-based medical image analysis for brain tumor studies

Stefan Bauer, Roland Wiest, Lutz-P Nolte, Mauricio Reyes
2013 Physics in Medicine and Biology  
This review article aims at providing a comprehensive overview by giving a brief introduction to brain tumors and imaging of brain tumors first.  ...  caused by the tumor.  ...  This research was partially funded by the European Union within the framework of the ContraCancrum project (FP7 -IST-223979) and it was also partially funded by the Swiss National Science Foundation within  ... 
doi:10.1088/0031-9155/58/13/r97 pmid:23743802 fatcat:3s6em3e6pjay5dqbntsnt42zbm

Enhancing Segmentation Approaches from Fuzzy-MPSO Based Liver Tumor Segmentation to Gaussian Mixture Model and Expected Maximization

Christo Ananth, M Kameswari, Densy John Vadakkan, Dr. Niha.K.
2022 Zenodo  
of Expected Maximisation (EM) calculations.  ...  This proposed strategy uses Gaussian blend models to demonstrate the portioned liver image, and it transforms the division issue into the most significant probability parameter estimation through the use  ...  Lu et al. came up with an idea for a method that could be used to perform 3D localization and segmentation of the liver by using a convolutional neural network (CNN) and graph cuts [11] .  ... 
doi:10.5281/zenodo.6791198 fatcat:xuox37wkgbetxjmchvy2t3eodu

Automatic brain lesion segmentation on standard magnetic resonance images: a scoping review

Emilia Gryska, Justin Schneiderman, Isabella Björkman-Burtscher, Rolf A Heckemann
2021 BMJ Open  
In this study, we map the field of automatic MR brain lesion segmentation to understand the clinical applicability of prevalent methods and study designs, as well as challenges and limitations in the field.DesignScoping  ...  We present a general overview and trends in the field with regard to publication sources, segmentation principles used and types of lesions.  ...  Fully automatic method for segmentation of brain tumor from multimodal magnetic resonance images using wavelet transformation and clustering technique.  ... 
doi:10.1136/bmjopen-2020-042660 pmid:33514580 pmcid:PMC7849889 fatcat:im46nmvzovemzk54m2i4grkuoa

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Bjoern H. Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth Gerstner (+56 others)
2015 IEEE Transactions on Medical Imaging  
DOYLE, VASSEUR, DOJAT & FORBES (2013): FULLY AUTOMATIC BRAIN TUMOR SEGMENTATION FROM MULTIPLE MR SEQUENCES USING HIDDEN MARKOV FIELDS AND VARIATIONAL EM Algorithm and Data: We propose an adaptive scheme  ...  HAMAMCI & UNAL (2012): MULTIMODAL BRAIN TUMOR SEGMENTATION USING THE "TUMOR-CUT" METHOD Algorithm and data: As described in detail in the "Tumorcut" article [72] , the semi-automatic tumor segmentation  ... 
doi:10.1109/tmi.2014.2377694 pmid:25494501 pmcid:PMC4833122 fatcat:csrnfqc4i5eilh7wk5howvpr4u

Machine Learning Techniques for Biomedical Image Segmentation: An Overview of Technical Aspects and Introduction to State-of-Art Applications [article]

Hyunseok Seo, Masoud Badiei Khuzani, Varun Vasudevan, Charles Huang, Hongyi Ren, Ruoxiu Xiao, Xiao Jia, Lei Xing
2019 Medical Physics (Lancaster)   pre-print
segmentation results attained by those learning models that were published in the past three years.  ...  In recent years, significant progress has been made in developing more accurate and efficient machine learning algorithms for segmentation of medical and natural images.  ...  Qin et al. 47 compared the liver segmentation results using the deep learning, active contouring, and the graph cut.  ... 
doi:10.1002/mp.13649 pmid:32418337 arXiv:1911.02521v1 fatcat:z6lbdtxxqzclthwu4mijo5ss3y

Automated Glioblastoma Segmentation Based on a Multiparametric Structured Unsupervised Classification

Javier Juan-Albarracín, Elies Fuster-Garcia, José V. Manjón, Montserrat Robles, F. Aparici, L. Martí-Bonmatí, Juan M. García-Gómez, Jesus Malo
2015 PLoS ONE  
We evaluated our brain tumour segmentation method with the public BRAin Tumor Segmentation (BRATS) 2013 Test and Leaderboard datasets.  ...  Automatic brain tumour segmentation has become a key component for the future of brain tumour treatment.  ...  Acknowledgments The authors would like to thank Jose Enrique Romero Gómez (IBIME, ITACA, UPV) for his support in some of the pre-processing techniques used in this study. Author Contributions  ... 
doi:10.1371/journal.pone.0125143 pmid:25978453 pmcid:PMC4433123 fatcat:47ipdmdvrbh7jav7dbvyfuq6nq

3D variational brain tumor segmentation using Dirichlet priors on a clustered feature set

Karteek Popuri, Dana Cobzas, Albert Murtha, Martin Jägersand
2011 International Journal of Computer Assisted Radiology and Surgery  
Conclusions Using priors on the brain/tumor appearance, our proposed automatic 3D variational segmentation method was able to better disambiguate the tumor from the surrounding tissue.  ...  But, automatic tumor segmentation from MRI data is a particularly challenging task. Tumors have a large diversity in shape and appearance with intensities overlapping the normal brain tissues.  ...  Subsequently, there have been a lot of efforts to develop semi-automatic and fully automatic segmentation algorithms to delineate tumors in MRI images.  ... 
doi:10.1007/s11548-011-0649-2 pmid:21833491 fatcat:5jepcfdc3zfopixuorytxmrjpy

scSE-NL V-Net: A Brain Tumor Automatic Segmentation Method Based on Spatial and Channel "Squeeze-and-Excitation" Network With Non-local Block

Juhua Zhou, Jianming Ye, Yu Liang, Jialu Zhao, Yan Wu, Siyuan Luo, Xiaobo Lai, Jianqing Wang
2022 Frontiers in Neuroscience  
In this study, we propose a brain tumor automatic segmentation method called scSE-NL V-Net.  ...  The dataset used in this paper is from the brain tumor segmentation challenge 2020 database.  ...  and XL contributed to data analysis and data curation. JuZ, JY, JiZ, SL, and JW contributed to data visualization. JuZ and YL contributed to software implementation.  ... 
doi:10.3389/fnins.2022.916818 pmid:35712454 pmcid:PMC9197379 fatcat:qi6l7lwk3fbpvbwl2gz3n7cl5q

Author Index

2010 2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition  
Retail Stores Davatzikos, Christos Workshop: Groupwise Morphometric Analysis Based on High Dimensional Clustering Workshop: An EM Algorithm for Brain Tumor Image Registration: A Tumor Growth Modeling  ...  Li, Ruonan Group Motion Segmentation Using a Spatio-Temporal Driving Force Model Li, Shuo Finding Image Distributions on Active Curves Graph Cut Segmentation with a Global Constraint: Recovering  ... 
doi:10.1109/cvpr.2010.5539913 fatcat:y6m5knstrzfyfin6jzusc42p54

A robust statistics driven volume-scalable active contour for segmenting anatomical structures in volumetric medical images with complex conditions

Kuanquan Wang, Chao Ma
2016 BioMedical Engineering OnLine  
for brain tumors, etc., measured by Dice similarity coefficients value for the overlap between the algorithm one and the ground truth.  ...  The segmentation results of various anatomical structures, such as white matter (WM), atrium, caudate nucleus and brain tumor, were evaluated quantitatively by comparing with the corresponding ground truths  ...  Acknowledgements This work was supported by National Nature Science Foundation of China (NSFC) Grant No. 61173086 and 61571165.  ... 
doi:10.1186/s12938-016-0153-6 pmid:27074891 pmcid:PMC4831199 fatcat:rmdb6467wzhu5iasl4g5a6rfcq

Low and high grade glioma segmentation in multispectral brain MRI data

László Szilágyi, David Iclănzan, Zoltán Kapás, Zsófia Szabó, Ágnes Győrfi, László Lefkovits
2018 Acta Universitatis Sapientiae: Informatica  
While an automatic tumor detection algorithm can support a mass screening system, the precise segmentation of the tumor can assist medical staff at therapy planning and patient monitoring.  ...  Several hundreds of thousand humans are diagnosed with brain cancer every year, and the majority dies within the next two years. The chances of survival could be easiest improved by early diagnosis.  ...  The MICCAI Brain Tumor Segmentation Challenge, organized yearly since 2012, intensified the research in this topic and led to several important solutions, which are usually assisted by the use of prior  ... 
doi:10.2478/ausi-2018-0007 fatcat:hgam2xsuyngxzote542eweokym
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