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SEMANTIC ANALYSIS AND SYNTHESIS OF COMPLEX BIOLOGICAL SYSTEMS

FEI XIE, PHILLIP C.-Y. SHEU, ARTHUR LANDER, VITTORIO CRISTINI
2005 International journal of software engineering and knowledge engineering  
Our long-term goal is to build a knowledge system that allows biologists to synthesize complex biological systems via natural language interactions, and the system is able to generate the corresponding  ...  To focus, the first goal in this research is to build a knowledge system prototype that focuses on transport related biological problems that occur from the cellular to tissue level.  ...  Acknowledgments Fei Xei and Phillip Sheu like to thank Mr. Hiroshi Yamaguchi and Mr. Atsushi Kitazawa of NEC Soft, Japan for providing many technical advices and assistance about SemanticObjects.  ... 
doi:10.1142/s0218194005002415 fatcat:vpqk6qbouff6lcxkeod2hwvbiq

Secure Bio Semantic Computing Scheme

Hiroshi Yamaguchi, Phillip C.-Y. Sheu, Ryo Fujita, Shigeo Tsujii
2015 Zenodo  
Due to the diversity of problems in various research fields, the semantic capability description language (SCDL) plays and important role as a common language and generic form for problem formalization  ...  We show several example to Biomedical problems in this paper.  ...  User 1) Structured Natural Language Question is described in structured natural language and parsed into a set of SCDL. ・.  ... 
doi:10.5281/zenodo.1108175 fatcat:6rmvzpfkhbcpfcrzz3voxswlde

The Systran NLP Browser: An Application of Machine Translation Technology in Cross-Language Information Retrieval [chapter]

Denis A. Gachot, Elke Lange, Jin Yang
1998 Cross-Language Information Retrieval  
one language to another.  ...  approach of using an existing machine translation system in multilingual information retrieval, as usually proposed, consists of automatically translating queries, or even the entire textual database, from  ...  We would also like to thank Dale Bostad from NAIC for his continuous interest and long-time support.  ... 
doi:10.1007/978-1-4615-5661-9_9 fatcat:y2k3nyrphfb7xboe35uhqykgxy

Augmenting MATLAB with semantic objects for an interactive visual environment

Changhyun Lee, Jaegul Choo, Duen Horng (Polo) Chau, Haesun Park
2013 Proceedings of the ACM SIGKDD Workshop on Interactive Data Exploration and Analytics - IDEA '13  
However, most of them provide little interaction from visualizations mainly due to the fact that the tools treat the data as just numerical vectors or matrices while ignoring any semantic meaning associated  ...  Such capabilities allow users to flexibly assign essential interaction capabilities, such as brushing-and-linking and details-on-demand interactions, to visualizations.  ...  The detailed semantic information can be accessible from a semanticobject viewer that pops up by right-clicking the selection. The user can also gain a set of semantic object IDs from the selection.  ... 
doi:10.1145/2501511.2501521 dblp:conf/kdd/LeeCCP13 fatcat:fhvrbzu5pbdjbibxp4abln3hhu

An ontology for Chinese government archives knowledge representation and reasoning

Zhiyu Wang, Zhiping Song, Guang Yu, Xiaoyu Wang
2021 IEEE Access  
Finally, after completing the above two tasks and preprocessing the collected government archives catalog data, we used named entity recognition technology to perform text analysis and natural language  ...  In general, it identifies those and categorizes them according to the facts contained in the natural text.  ... 
doi:10.1109/access.2021.3112001 fatcat:6mvros4g3nbg3gpryuiljf6y4u

Ring: A unifying meta-model and infrastructure for Smalltalk source code analysis tools

Verónica Uquillas Gómez, Stéphane Ducasse, Theo D'Hondt
2012 Computer languages, systems & structures  
own structure.  ...  Now naturally the questions of their definition, the abstractions they use, and the APIs of such models are raised, especially in the context of a reflective system which already offers a model of its  ...  This approach tries to get as much as possible out off the natural causal connection of the underlying Smalltalk model.  ... 
doi:10.1016/j.cl.2011.11.001 fatcat:fuub6uhxanfa3chbsw5lt4zhxu

Integration of Heterogeneous Knowledge Sources in the CALO Query Manager [chapter]

José Luis Ambite, Vinay K. Chaudhri, Richard Fikes, Jessica Jenkins, Sunil Mishra, Maria Muslea, Tomas Uribe, Guizhen Yang
2005 Lecture Notes in Computer Science  
We have evaluated the system on a suite of test queries in a realistic application to verify the practicality of our approach.  ...  The system is based on a novel architecture for combining knowledge sources in which the sources can produce new subgoals as well as ground facts in the search for answers to existing subgoals.  ...  The need for retrieving such ground facts from other reasoners can be naturally modeled using partial proofs.  ... 
doi:10.1007/11575863_15 fatcat:dzfvug33p5dixiaza2jrfnctba

Semantic analysis and synthesis of complex biological systems

Fei Xie, P. C-y Sheu, A. Lander, V. Christini
Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering  
Our long-term goal is to build a knowledge system that allows biologists to synthesize complex biological systems via natural language interactions, and the system is able to generate the corresponding  ...  To focus, the first goal in this research is to build a knowledge system prototype that focuses on transport related biological problems that occur from the cellular to tissue level.  ...  Acknowledgments Fei Xei and Phillip Sheu like to thank Mr. Hiroshi Yamaguchi and Mr. Atsushi Kitazawa of NEC Soft, Japan for providing many technical advices and assistance about SemanticObjects.  ... 
doi:10.1109/bibe.2004.1317397 dblp:conf/bibe/XieSLC04 fatcat:n3gcisf2fzblbpf6zuiijw2uk4

GKR: the Graphical Knowledge Representation for semantic parsing

Aikaterini-Lida Kalouli, Richard Crouch
2018 Proceedings of the Workshop on Computational Semantics beyond Events and Roles   unpublished
This paper describes the first version of an open-source semantic parser that creates graphical representations of sentences to be used for further semantic processing, e.g. for natural language inference  ...  Schematic Computation of Natural Language Inference We would like to very briefly demonstrate how GKR facilitates semantic processing tasks, such as natural language inference (NLI) and semantic similarity  ...  , distributivity and quantifier scope, co-reference, and sense selection. • Though oriented to using formal ontologies to support a Natural Logic (MacCartney and Manning, 2007) style of Natural Language  ... 
doi:10.18653/v1/w18-1304 fatcat:gopsqlx4vzaotacgtx2rc4ovfy

Open Knowledge: Promises and Challenges [chapter]

Rufus Pollock, Jo Walsh
2012 The Digital Public Domain: Foundations for an Open Culture  
the RDF/XML serialisation of the same structured data, ready to be imported into any programming language with RDF/XML support: <?  ...  To quote again from The Public Domain Manifesto: private incentive to create shall naturally follow like exceptions from the rule.  ...  CC recommends exposing a mechanism to extract the CC REL abstract model from the XML, so that CC tools need not know about every possible XML schema ahead of time.  ... 
doi:10.11647/obp.0019.07 fatcat:r3yre7bnmndbvbhggtzvdhdyaq

Applying Semantic Segment Detection to Enhance Web Page Presentation on the Mobile Internet

Stephen J.H. Yang, Jia Zhang, Stella T.C. Tsai, Jeff J.S. Huang
2018
For example, the homepage of a company is organized by the various aspects of the company. (6) natural language and image level. Words may expose some semantic intention of the page developers.  ...  programming language, so that its code structure is delimited by a set of predefined HTML tags. (3) HTML structure level: Tags have inherent semantic meanings; so that they can depict the presentation  ... 
doi:10.1184/r1/6709733.v1 fatcat:svxqerh4lnemxjr25kvypk6jkm

Development of a Procedure Reference Model for the Alignment of Non‐medical Support Service Applications in Hospitals – A Framework for Ensuring the Correct Reporting and Configuration of Key Performance Indicators

N Gerber
2019
The model turned out to be relevant in the context of the challenges posed by the current structural changes in healthcare and hospitals.  ...  To be able to deliver the adequate services and service levels and control them within the very complex service provision of hospitals, the managers depend on relevant key performance indicators (KPIs)  ...  According to Esposito (2001, p. 570) , translation is defined as "the transfer of meaning from a source language […] to a target language […] ".  ... 
doi:10.24377/ljmu.t.00011589 fatcat:q5useaicunfxzkc6jfgblk7wqi

The Digital Public Domain

Melanie Dulong De Rosnay, Juan Carlos, De Martin, Melanie Dulong De Rosnay, Juan Carlos, De Martin
unpublished
To quote again from The Public Domain Manifesto: private incentive to create shall naturally follow like exceptions from the rule.  ...  Gleaning Resource Descriptions from Dialects of Languages (GRDDL) (http://www. w3.org/TR/grddl) is a W3C recommendation for linking Web documents to algorithms that extract RDF data from the document.  ...  When publishing CC licensing information inside an XML document, CC recommends exposing a mechanism to extract the CC REL abstract model from the XML, so that CC tools need not know about every possible  ... 
fatcat:ujfn7mxn2veedew2dt63agt6na